Lag0011285 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0011285
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Transposase
Location	chr1: 20076653 .. 20077997 (+)
RNA-Seq Expression	Lag0011285
Synteny	Lag0011285

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGACGAGAATATGGATGGTGAGCCAAATGAAGCATCGAATACAAAGAAAGACGATGGGGACCTACTATTATGTTCGATGTAACACGAATTAGGAGTTCAGGAGTAAAAAGCTAGTGGAATATATTGATCAAGGAGTACCCATCGGTGTCAATGGAGCTAAGTTGCATTCTTTTATTGGATCTTGTGTGTATTATCATATTCCCACTACCTATGCATCCTGGAAGCATGTGTCTGTTGAGTTGAAAGAAAAAATATATAATATGCATATTTTCACTTGATAATATTGTTGAGGTATGTATGTTTTTACTTGAAATATGACTACGTTTTTTGTGTATAGGCTGCCTTTATAATTGATAGTAGATCTAGAAGGGTCATTCTTAGAACTGCAAGCACATCATTTCGTCAATTCAAGCATTGGTTGACAACAAAATATATCATTCCATATAAGATGAACCTCAACTTTTGGCTAATCCACCGGAAATGTACTCTTACATTGGTACAAATCATTGGATTGCATTTGTTAGCTCAGATTGAGTGTAGAGTTTGAGGTATTAAAAATTTCGTTCTAATTAGTATATCAATATTTGCTATTATTTACACTCGTTCATGTCATTGTTACTCATAATTGTAACAATTATGTAGAAAATTAGAAGCTTGCAACAAGCACAACAAGCTAAGAATAAGTATAATCATCGACTTTCAAGGAAATGATATGCTAATCTTGCCGAGGAAATGGTAAGAATATTGGTTTATGTTATCAAGATTCGTAAATTGATTATGTATCTAACTTCGTTTTCATTGAAATGTAAAAGAAAGTATCATCTAGTGAAAGTGATGTTGGTCGAGCTAATTTGTGGAAGAAGGCTCGAGCAAATAAAAAAGGAGAATACGACGATAAAAATGTCCAAGAAGTTATCAATCGAATAGTAAGACAAATATTACATTTACTTGAATTATATGAAATATATAGAATATGAAATTCTAATAGCATTTCATTTCTTTTAGGATCAAATCTCGAAGAATATGGACCCACTTTCCAACAAGCATCCCTCTCTAATGATGCATTAACTCAAGCTTTGGGTACTCCAGAATACAATGGACGTGTACGTGGGGTTGGTGGTTTTGTTACTCCTATAACTTACTTTCAGACAGTGTTGAAGAATGATAAAAACAAAGAAATTGTTCATGATAATGAAGCACTTCGTCGTCGTGTGAAAAATTGGAAGGTCAGATTCAAAAGACACGATCTACGCCAACATCTGAACATCGAAGCAGCTCCAAGCAAGTTTCACAAGCTGAAAATGAATCTAAAGAGAAGTTGGTCCATGATCAAGATGTGA

mRNA sequence

ATGGATGACGAGAATATGGATGGATCAAATCTCGAAGAATATGGACCCACTTTCCAACAAGCATCCCTCTCTAATGATGCATTAACTCAAGCTTTGGGTACTCCAGAATACAATGGACGTGTACGTGGGGTTGGTGGTTTTGTTACTCCTATAACTTACTTTCAGACAGTGTTGAAGAATGATAAAAACAAAGAAATTGTTCATGATAATGAAGCACTTCGTCGTCGTGTGAAAAATTGGAAGGTCAGATTCAAAAGACACGATCTACGCCAACATCTGAACATCGAAGCAGCTCCAAGCAAGTTTCACAAGCTGAAAATGAATCTAAAGAGAAGTTGGTCCATGATCAAGATGTGA

Coding sequence (CDS)

ATGGATGACGAGAATATGGATGGATCAAATCTCGAAGAATATGGACCCACTTTCCAACAAGCATCCCTCTCTAATGATGCATTAACTCAAGCTTTGGGTACTCCAGAATACAATGGACGTGTACGTGGGGTTGGTGGTTTTGTTACTCCTATAACTTACTTTCAGACAGTGTTGAAGAATGATAAAAACAAAGAAATTGTTCATGATAATGAAGCACTTCGTCGTCGTGTGAAAAATTGGAAGGTCAGATTCAAAAGACACGATCTACGCCAACATCTGAACATCGAAGCAGCTCCAAGCAAGTTTCACAAGCTGAAAATGAATCTAAAGAGAAGTTGGTCCATGATCAAGATGTGA

Protein sequence

MDDENMDGSNLEEYGPTFQQASLSNDALTQALGTPEYNGRVRGVGGFVTPITYFQTVLKNDKNKEIVHDNEALRRRVKNWKVRFKRHDLRQHLNIEAAPSKFHKLKMNLKRSWSMIKM

Homology

[Close]

BLAST of Lag0011285 vs. NCBI nr
Match: KAA0041462.1 (putative serine/threonine-protein kinase nek2 [Cucumis melo var. makuwa])

HSP 1 Score: 75.1 bits (183), Expect = 4.5e-10
Identity = 49/115 (42.61%), Postives = 67/115 (58.26%), Query Frame = 0


Query: 5   NMDGSNLEEYGPTFQQASLSNDALTQALGTPEYNGRVRGVGGFVTPITYFQTVLKNDKNK 64
           N+D S++  +         SND LTQALGT E+NGRVRGVGG+VTPITYF +V K  K++
Sbjct: 244 NIDSSSVNRH--------CSNDVLTQALGTKEHNGRVRGVGGYVTPITYFHSVKKTSKDE 303

Query: 65  -EIVHDNEALRRRVKNWKVRFKRHDLRQHLNIEAAPSKFHKLKMNLKRSWSMIKM 119
             I+ +NE LRRRV   + +  R +L   L+   + S+           W +IKM
Sbjct: 304 ANILVENEELRRRVSELEAQI-RSNLSTPLSAHGSCSR--------PIEWDLIKM 341

[Close]

BLAST of Lag0011285 vs. NCBI nr
Match: KAA0055505.1 (putative serine/threonine-protein kinase nek2 [Cucumis melo var. makuwa])

HSP 1 Score: 74.3 bits (181), Expect = 7.7e-10
Identity = 39/81 (48.15%), Postives = 54/81 (66.67%), Query Frame = 0


Query: 6   MDGSNLEEYGPTFQQASLSNDALTQALGTPEYNGRVRGVGGFVTPITYFQTVLKNDKNK- 65
           +D ++ EE+  +    +  ND LTQALGT E+NGRVRGVGG+VTP TYF +V K  K + 
Sbjct: 152 IDQNHWEEFVRSRLSETFQNDVLTQALGTKEHNGRVRGVGGYVTPTTYFHSVKKTSKGEA 211

Query: 66  EIVHDNEALRRRVKNWKVRFK 86
            I+ +NE LRRRV   + + +
Sbjct: 212 NILVENEDLRRRVSELEAQIR 232

[Close]

BLAST of Lag0011285 vs. NCBI nr
Match: KAA0059875.1 (uncharacterized protein E6C27_scaffold108G001630 [Cucumis melo var. makuwa])

HSP 1 Score: 74.3 bits (181), Expect = 7.7e-10
Identity = 38/73 (52.05%), Postives = 47/73 (64.38%), Query Frame = 0


Query: 25  NDALTQALGTPEYNGRVRGVGGFVTPITYFQTVLKNDKNK-----EIVHDNEALRRRVKN 84
           NDALTQALGTPEY GRVRGVGGF+TP  YF        NK     +I+ +NEALR+RV+ 
Sbjct: 129 NDALTQALGTPEYGGRVRGVGGFITPTVYFHQAKPRKSNKVDTTQQIIDENEALRKRVRE 188

Query: 85  WKVRFKRHDLRQH 93
            K + +     +H
Sbjct: 189 LKQKVQSIPTSEH 201

[Close]

BLAST of Lag0011285 vs. NCBI nr
Match: KAA0032194.1 (transposase [Cucumis melo var. makuwa])

HSP 1 Score: 73.9 bits (180), Expect = 1.0e-09
Identity = 37/74 (50.00%), Postives = 50/74 (67.57%), Query Frame = 0


Query: 24  SNDALTQALGTPEYNGRVRGVGGFVTPITYFQTVL-----KNDKNKEIVHDNEALRRRVK 83
           SNDALTQALGT EY GRVRGVGGF+TP  YF         K D  ++I+++NEALR+R++
Sbjct: 507 SNDALTQALGTSEYGGRVRGVGGFITPTVYFHQAKLRKSNKVDTTQQIINENEALRKRIR 566

Query: 84  NWKVRFKRHDLRQH 93
             + +F+     +H
Sbjct: 567 ELEQKFQSIPTSEH 580

[Close]

BLAST of Lag0011285 vs. NCBI nr
Match: KAA0054991.1 (putative serine/threonine-protein kinase nek2 [Cucumis melo var. makuwa])

HSP 1 Score: 73.9 bits (180), Expect = 1.0e-09
Identity = 37/63 (58.73%), Postives = 48/63 (76.19%), Query Frame = 0


Query: 24  SNDALTQALGTPEYNGRVRGVGGFVTPITYFQTVLKNDKNK-EIVHDNEALRRRVKNWKV 83
           SND LTQALGT E+NGRVRGVGG+V+PITYF +V K  K++  I+ +NE LRRRV   + 
Sbjct: 261 SNDVLTQALGTKEHNGRVRGVGGYVSPITYFHSVKKTSKDEANILVENEELRRRVSELET 320

Query: 84  RFK 86
           + +
Sbjct: 321 QIR 323

The following BLAST results are available for this feature:

BLAST of Lag0011285 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0041462.1	4.5e-10	42.61	putative serine/threonine-protein kinase nek2 [Cucumis melo var. makuwa]	[more]
KAA0055505.1	7.7e-10	48.15	putative serine/threonine-protein kinase nek2 [Cucumis melo var. makuwa]	[more]
KAA0059875.1	7.7e-10	52.05	uncharacterized protein E6C27_scaffold108G001630 [Cucumis melo var. makuwa]	[more]
KAA0032194.1	1.0e-09	50.00	transposase [Cucumis melo var. makuwa]	[more]
KAA0054991.1	1.0e-09	58.73	putative serine/threonine-protein kinase nek2 [Cucumis melo var. makuwa]	[more]

BLAST of Lag0011285 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0011285.1	Lag0011285.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016310	phosphorylation
biological_process	GO:0006508	proteolysis
molecular_function	GO:0008234	cysteine-type peptidase activity
molecular_function	GO:0016301	kinase activity