Lag0011277 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0011277
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	DUF4283 domain-containing protein
Location	chr1: 19851792 .. 19852133 (+)
RNA-Seq Expression	Lag0011277
Synteny	Lag0011277

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGATTGGTATAAAATCACGCGTTGTCTGCAAACCCATCTCAATGCCTTTTGCCATTTGGTGCCCTTCAGATCAGACGAAGCCCTTCTTAGACTCGATCAAGATGAAGAGCCTCCCTCACTTTGCCACATTGAAGATTGGCAAACATATAGGATCCTTTAATCTCAAATTTGAAAGATGGAGTATAGAAGCACAAATAAGGAACCCTGTGATTCCTTCATATGGAGGATGGATAAAAATTCGTAACTTACCTTTAGACCGTTGGGATCATGAAACCTTGAAAGAGATTGAAGATGCTTGCGGCGGTTTTATTGATGTTGCAAAAAAGACCGTTGCCTGA

mRNA sequence

ATGACGATTGGTATAAAATCACGCGTTGTCTGCAAACCCATCTCAATGCCTTTTGCCATTTGGTGCCCTTCAGATCAGACGAAGCCCTTCTTAGACTCGATCAAGATGAAGAGCCTCCCTCACTTTGCCACATTGAAGATTGGCAAACATATAGGATCCTTTAATCTCAAATTTGAAAGATGGAGTATAGAAGCACAAATAAGGAACCCTGTGATTCCTTCATATGGAGGATGGATAAAAATTCGTAACTTACCTTTAGACCGTTGGGATCATGAAACCTTGAAAGAGATTGAAGATGCTTGCGGCGGTTTTATTGATGTTGCAAAAAAGACCGTTGCCTGA

Coding sequence (CDS)

ATGACGATTGGTATAAAATCACGCGTTGTCTGCAAACCCATCTCAATGCCTTTTGCCATTTGGTGCCCTTCAGATCAGACGAAGCCCTTCTTAGACTCGATCAAGATGAAGAGCCTCCCTCACTTTGCCACATTGAAGATTGGCAAACATATAGGATCCTTTAATCTCAAATTTGAAAGATGGAGTATAGAAGCACAAATAAGGAACCCTGTGATTCCTTCATATGGAGGATGGATAAAAATTCGTAACTTACCTTTAGACCGTTGGGATCATGAAACCTTGAAAGAGATTGAAGATGCTTGCGGCGGTTTTATTGATGTTGCAAAAAAGACCGTTGCCTGA

Protein sequence

MTIGIKSRVVCKPISMPFAIWCPSDQTKPFLDSIKMKSLPHFATLKIGKHIGSFNLKFERWSIEAQIRNPVIPSYGGWIKIRNLPLDRWDHETLKEIEDACGGFIDVAKKTVA

Homology

[Close]

BLAST of Lag0011277 vs. NCBI nr
Match: KAA0050054.1 (hypothetical protein E6C27_scaffold675G00340 [Cucumis melo var. makuwa])

HSP 1 Score: 84.3 bits (207), Expect = 7.2e-13
Identity = 34/61 (55.74%), Postives = 45/61 (73.77%), Query Frame = 0


Query: 51  IGSFNLKFERWSIEAQIRNPVIPSYGGWIKIRNLPLDRWDHETLKEIEDACGGFIDVAKK 110
           +G F +KFE W+ +A     VIPSYGGWIK+R +PL  W+ E+  +I DACGGFI+VAK+
Sbjct: 299 VGRFYVKFEEWNQKAHASPKVIPSYGGWIKVRGVPLHAWNLESFTQIGDACGGFIEVAKE 358

Query: 111 T 112
           T
Sbjct: 359 T 359

[Close]

BLAST of Lag0011277 vs. NCBI nr
Match: TYK10355.1 (hypothetical protein E5676_scaffold367G00330 [Cucumis melo var. makuwa])

HSP 1 Score: 84.3 bits (207), Expect = 7.2e-13
Identity = 34/61 (55.74%), Postives = 45/61 (73.77%), Query Frame = 0


Query: 51  IGSFNLKFERWSIEAQIRNPVIPSYGGWIKIRNLPLDRWDHETLKEIEDACGGFIDVAKK 110
           +G F +KFE W+ +A     VIPSYGGWIK+R +PL  W+ E+  +I DACGGFI+VAK+
Sbjct: 351 VGRFYVKFEEWNQKAHASPKVIPSYGGWIKVRGVPLHAWNLESFTQIGDACGGFIEVAKE 410

Query: 111 T 112
           T
Sbjct: 411 T 411

[Close]

BLAST of Lag0011277 vs. NCBI nr
Match: KAA0039967.1 (hypothetical protein E6C27_scaffold122G002490 [Cucumis melo var. makuwa])

HSP 1 Score: 82.8 bits (203), Expect = 2.1e-12
Identity = 33/61 (54.10%), Postives = 44/61 (72.13%), Query Frame = 0


Query: 51  IGSFNLKFERWSIEAQIRNPVIPSYGGWIKIRNLPLDRWDHETLKEIEDACGGFIDVAKK 110
           +G F +KFE WS +      VIPSYGGWIK+R +PL  W+ E+  +I DACGGF++VAK+
Sbjct: 245 VGRFYVKFEEWSQKTHASPKVIPSYGGWIKVRGVPLHAWNLESFIQIGDACGGFVEVAKE 304

Query: 111 T 112
           T
Sbjct: 305 T 305

[Close]

BLAST of Lag0011277 vs. NCBI nr
Match: KAA0040039.1 (hypothetical protein E6C27_scaffold366G00060 [Cucumis melo var. makuwa])

HSP 1 Score: 82.8 bits (203), Expect = 2.1e-12
Identity = 33/61 (54.10%), Postives = 44/61 (72.13%), Query Frame = 0


Query: 51  IGSFNLKFERWSIEAQIRNPVIPSYGGWIKIRNLPLDRWDHETLKEIEDACGGFIDVAKK 110
           +G F +KFE WS +      VIPSYGGWIK+R +PL  W+ E+  +I DACGGF++VAK+
Sbjct: 261 VGRFYVKFEEWSQKTHASPKVIPSYGGWIKVRGVPLHAWNLESFIQIGDACGGFVEVAKE 320

Query: 111 T 112
           T
Sbjct: 321 T 321

[Close]

BLAST of Lag0011277 vs. NCBI nr
Match: TYK24535.1 (hypothetical protein E5676_scaffold266G00770 [Cucumis melo var. makuwa])

HSP 1 Score: 82.8 bits (203), Expect = 2.1e-12
Identity = 33/61 (54.10%), Postives = 44/61 (72.13%), Query Frame = 0


Query: 51  IGSFNLKFERWSIEAQIRNPVIPSYGGWIKIRNLPLDRWDHETLKEIEDACGGFIDVAKK 110
           +G F +KFE WS +      VIPSYGGWIK+R +PL  W+ E+  +I DACGGF++VAK+
Sbjct: 245 VGRFYVKFEEWSQKTHASPKVIPSYGGWIKVRGVPLHAWNLESFIQIGDACGGFVEVAKE 304

Query: 111 T 112
           T
Sbjct: 305 T 305

The following BLAST results are available for this feature:

BLAST of Lag0011277 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0050054.1	7.2e-13	55.74	hypothetical protein E6C27_scaffold675G00340 [Cucumis melo var. makuwa]	[more]
TYK10355.1	7.2e-13	55.74	hypothetical protein E5676_scaffold367G00330 [Cucumis melo var. makuwa]	[more]
KAA0039967.1	2.1e-12	54.10	hypothetical protein E6C27_scaffold122G002490 [Cucumis melo var. makuwa]	[more]
KAA0040039.1	2.1e-12	54.10	hypothetical protein E6C27_scaffold366G00060 [Cucumis melo var. makuwa]	[more]
TYK24535.1	2.1e-12	54.10	hypothetical protein E5676_scaffold266G00770 [Cucumis melo var. makuwa]	[more]

BLAST of Lag0011277 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025558	Domain of unknown function DUF4283	PFAM	PF14111	DUF4283	coord: 50..111 e-value: 3.2E-11 score: 43.0

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0011277.1	Lag0011277.1	mRNA