Lag0011274 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0011274
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Unknown protein
Location	chr1: 19821078 .. 19821416 (-)
RNA-Seq Expression	Lag0011274
Synteny	Lag0011274

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGCCAGAGCAATCCTCGAAGGTTTTGAAGCGTACCTTTCAGTGAGCAAGCTGGAGCGGTCGAGATTCAACCTTGTGGTTGAATCGGATTCGAGCGAGGCCATTGGGGCGCTAAGCCGTGCCTCAGAGGACCTCTCCGAGATGGAGGGCGTGGTTGAAGAGTTATTAGGGAGGGCAGATTCTGAGCGGGTCTCATTCTCCAAATGTCATTGCCTCAGGAACTCCTTGGCGCACGAGATCGCGAGAGCTGCCCTCTCCCATGGAGACTTCGTCTGGTTTTGGGATGGTTATTCCCCCGATTGTAGGGGTGGTGATCGGTTTTGGAGGGAAAATTGA

mRNA sequence

ATGGAGGCCAGAGCAATCCTCGAAGGTTTTGAAGCGTACCTTTCAGTGAGCAAGCTGGAGCGGTCGAGATTCAACCTTGTGGTTGAATCGGATTCGAGCGAGGCCATTGGGGCGCTAAGCCGTGCCTCAGAGGACCTCTCCGAGATGGAGGGCGTGGTTGAAGAGTTATTAGGGAGGGCAGATTCTGAGCGGGTCTCATTCTCCAAATGTCATTGCCTCAGGAACTCCTTGGCGCACGAGATCGCGAGAGCTGCCCTCTCCCATGGAGACTTCGTCTGGTTTTGGGATGGTTATTCCCCCGATTGTAGGGGTGGTGATCGGTTTTGGAGGGAAAATTGA

Coding sequence (CDS)

ATGGAGGCCAGAGCAATCCTCGAAGGTTTTGAAGCGTACCTTTCAGTGAGCAAGCTGGAGCGGTCGAGATTCAACCTTGTGGTTGAATCGGATTCGAGCGAGGCCATTGGGGCGCTAAGCCGTGCCTCAGAGGACCTCTCCGAGATGGAGGGCGTGGTTGAAGAGTTATTAGGGAGGGCAGATTCTGAGCGGGTCTCATTCTCCAAATGTCATTGCCTCAGGAACTCCTTGGCGCACGAGATCGCGAGAGCTGCCCTCTCCCATGGAGACTTCGTCTGGTTTTGGGATGGTTATTCCCCCGATTGTAGGGGTGGTGATCGGTTTTGGAGGGAAAATTGA

Protein sequence

MEARAILEGFEAYLSVSKLERSRFNLVVESDSSEAIGALSRASEDLSEMEGVVEELLGRADSERVSFSKCHCLRNSLAHEIARAALSHGDFVWFWDGYSPDCRGGDRFWREN

Homology

The following BLAST results are available for this feature:

BLAST of Lag0011274 vs.


Match Name	E-value	Identity	Description

BLAST of Lag0011274 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 39..59
IPR002156	Ribonuclease H domain	PROSITE	PS50879	RNASE_H	coord: 1..87 score: 9.269737
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 1..91

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0011274.1	Lag0011274.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity