Lag0011272 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0011272
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Glial fibrillary acidic protein-like
Location	chr1: 19768864 .. 19769518 (+)
RNA-Seq Expression	Lag0011272
Synteny	Lag0011272

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATGCCAACATACCCATAGAGTCGATACGATCATTTCCTCTGAATATGATGAGCTGGGTACTGTGCTACAATGGGCAGAGCAGACACAACTAAAACATGGGGATAGTCTGCCTTTAAAAGCCCATTTTCATCATCTTCTCAGGTCAAGTTCAAGTCATTTCTAATGAGCTGGGGAGTTGAAGGCCATCTGAGAAGGTTTAACACCGGAAAGAAGATTTATGTTCTCAAAGAGATACGACCATATTGCATACCTCATGTATATTCCAACTAACCGGTTCACCATCCAGGCTTTATTAGAATTCTAGGACCCGACCTACAAGTGTTTCGCATTCCAAGATTTTGACTTGGTCCCGACCATTGAGGAGTACCACACGATGCTGAACATTGAAGAAAAAGGTGGAGAAATGATCTACTGTTTCAACCCACAGTTAACTGCGAAGAGAACTTTATCCAAATTTCTAGTTGTACACCTGAAGGAAGTGCAAAAAATGTGAAAGTGAAAGGGGTTAAAGAGTCTATATCTGCAGATTATCTAACAGAACTCGCGCGCAAACACATAAATGAAGAAAAGGGTCTGGTTCTGTTAGCTTTGTGCATCTACGGGATGGTCTTGTATCCCAGAGTTAAAGGATATGTGGATGGCGATGTTTGA

mRNA sequence

ATGAATGCCAACATACCCATAGAGTCGATACGATCATTTCCTCTGAATATGATGAGCTGGGTCAAGTTCAAGTCATTTCTAATGAGCTGGGGAGTTGAAGGCCATCTGAGAAGTTGTACACCTGAAGGAAGTGCAAAAAATGTGAAAGTGAAAGGGGTTAAAGAGTCTATATCTGCAGATTATCTAACAGAACTCGCGCGCAAACACATAAATGAAGAAAAGGGTCTGGTTCTGTTAGCTTTGTGCATCTACGGGATGGTCTTGTATCCCAGAGTTAAAGGATATGTGGATGGCGATGTTTGA

Coding sequence (CDS)

ATGAATGCCAACATACCCATAGAGTCGATACGATCATTTCCTCTGAATATGATGAGCTGGGTCAAGTTCAAGTCATTTCTAATGAGCTGGGGAGTTGAAGGCCATCTGAGAAGTTGTACACCTGAAGGAAGTGCAAAAAATGTGAAAGTGAAAGGGGTTAAAGAGTCTATATCTGCAGATTATCTAACAGAACTCGCGCGCAAACACATAAATGAAGAAAAGGGTCTGGTTCTGTTAGCTTTGTGCATCTACGGGATGGTCTTGTATCCCAGAGTTAAAGGATATGTGGATGGCGATGTTTGA

Protein sequence

MNANIPIESIRSFPLNMMSWVKFKSFLMSWGVEGHLRSCTPEGSAKNVKVKGVKESISADYLTELARKHINEEKGLVLLALCIYGMVLYPRVKGYVDGDV

Homology

[Close]

BLAST of Lag0011272 vs. NCBI nr
Match: KAA0056623.1 (girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 70.9 bits (172), Expect = 7.2e-09
Identity = 30/55 (54.55%), Postives = 44/55 (80.00%), Query Frame = 0


Query: 46  KNVKVKGVKESISADYLTELARKHINEEKGLVLLALCIYGMVLYPRVKGYVDGDV 101
           K +KVKG +E++  DYL ++ + +I+E+KGL LLALCIYG V++P+ +GYVDG V
Sbjct: 153 KYIKVKGGEENVPFDYLIKMTQTYIDEDKGLTLLALCIYGAVIFPKAEGYVDGKV 207

[Close]

BLAST of Lag0011272 vs. NCBI nr
Match: KAA0060423.1 (uncharacterized protein E6C27_scaffold22G002420 [Cucumis melo var. makuwa])

HSP 1 Score: 70.1 bits (170), Expect = 1.2e-08
Identity = 28/55 (50.91%), Postives = 44/55 (80.00%), Query Frame = 0


Query: 46  KNVKVKGVKESISADYLTELARKHINEEKGLVLLALCIYGMVLYPRVKGYVDGDV 101
           K +K+KG +E++  DYL ++ + +++E+KGL LLALCIYG V++P+ +GYVDG V
Sbjct: 163 KYIKIKGGEENVPFDYLIKMTQTYVDEDKGLTLLALCIYGAVIFPKAEGYVDGKV 217

[Close]

BLAST of Lag0011272 vs. NCBI nr
Match: KAA0066094.1 (girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 68.9 bits (167), Expect = 2.8e-08
Identity = 28/53 (52.83%), Postives = 43/53 (81.13%), Query Frame = 0


Query: 46  KNVKVKGVKESISADYLTELARKHINEEKGLVLLALCIYGMVLYPRVKGYVDG 99
           K +KVKG +E++  DYL ++ + +++E+KGL LLALCIYG V++P+ +GYVDG
Sbjct: 163 KYIKVKGGEENVPFDYLIKMTQTYVDEDKGLTLLALCIYGAVIFPKAEGYVDG 215

[Close]

BLAST of Lag0011272 vs. NCBI nr
Match: TYK07552.1 (girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 68.2 bits (165), Expect = 4.7e-08
Identity = 29/55 (52.73%), Postives = 43/55 (78.18%), Query Frame = 0


Query: 46  KNVKVKGVKESISADYLTELARKHINEEKGLVLLALCIYGMVLYPRVKGYVDGDV 101
           K +KVK  +E++  DYL ++ + +I+E+KGL LLALCIYG V++P+ +GYVDG V
Sbjct: 153 KYIKVKDGEENVPFDYLIKMTQTYIDEDKGLTLLALCIYGAVIFPKAEGYVDGKV 207

[Close]

BLAST of Lag0011272 vs. NCBI nr
Match: KAA0036941.1 (girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 67.8 bits (164), Expect = 6.1e-08
Identity = 29/55 (52.73%), Postives = 43/55 (78.18%), Query Frame = 0


Query: 46  KNVKVKGVKESISADYLTELARKHINEEKGLVLLALCIYGMVLYPRVKGYVDGDV 101
           K +KVKG +E++  DYL ++ + +I+E+KGL LLALCIYG V++P+ +GYVD  V
Sbjct: 132 KYIKVKGGEENVPFDYLIKMTQTYIDEDKGLTLLALCIYGAVIFPKAEGYVDRKV 186

The following BLAST results are available for this feature:

BLAST of Lag0011272 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0056623.1	7.2e-09	54.55	girdin-like [Cucumis melo var. makuwa]	[more]
KAA0060423.1	1.2e-08	50.91	uncharacterized protein E6C27_scaffold22G002420 [Cucumis melo var. makuwa]	[more]
KAA0066094.1	2.8e-08	52.83	girdin-like [Cucumis melo var. makuwa]	[more]
TYK07552.1	4.7e-08	52.73	girdin-like [Cucumis melo var. makuwa]	[more]
KAA0036941.1	6.1e-08	52.73	girdin-like [Cucumis melo var. makuwa]	[more]

BLAST of Lag0011272 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0011272.1	Lag0011272.1	mRNA