Lag0011259 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0011259
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	chr1: 19203286 .. 19204665 (-)
RNA-Seq Expression	Lag0011259
Synteny	Lag0011259

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAACCTCTGAAACCAATTCCGAGATCTCAAGCGACTCGCAAAATGGCCAAATCGTTAACCCTGGGAATAAGATCTCCACTATGAAGCTGACCGATGAAAACTTCCTGATGTGGAAGTTCCAGATCCTCACTGCTCTCGAAGGTCACGATCTCGATGACCATATCAGTGTTGACTCTCAACCACCGCCTAAGACGATCCAGGTAAGTGAAAATGGAACAACGATCAGTAAACCTAACCCTGCCTACAAAGTTTGGAAAAAGCAAGATAAATTAGTGTCCTCTTTGATCGTTGGGTCTATGTTTGAATCTATTCTTGAACAAGTCCTTCACTTTAAATCGACAATGGAAATTTGGTCTTGCTTACTTCAGATTTTTAATTCACGACATCTTGCTCGAGTCATGAAAATTAAATCGAAACTACAAAATATTCAAAAGGTGGTATGTCTATGAATGAATATCTATCTAAAATCAAAAATGTATTGATGCTTTGTCTGCGATAGGAAAAGAAGGCGATGTACAGGGTCATATTATGTATATTTTGTCTGGATTGGGGGCTAAATATGAGACTATGGTATCTGTTACCCTTGCTAAAACTGGTACACAAATTGTTCAAGATTTTGTAGCCTTGTTATTGACTCGTGAGAGTCGAATAAAAAGCAAGTCAGTGGTTAATCCTGATAATGTTTTACCGTCTTGAAACTTAGCTGTTCAAAATGCTAGTCAAAACTCAGTCCAAAACCCTTCCCCTCAACCTCAACAGCAAAAGTTTAGTAATGGTAAAGGTAGGGGCCGTTCTAATTTTGGTCAAAACAGAGGTGGAAGGTCCTGGAATAATAGTAACAGACCCAGTGTCAGTTGTGTAATAAAATTGGCCATACTGTTATAAAATGCTACTATCGAGTTAAGATGGCAGGAGTTTATGCACTCAATTTAGTTCCCATGGACAAATGAACTCTTCTGGTCTAAATTTTGGTCCTCAACAGTTCAGTGGTCAGTTTTCCCGGATGCAAGCAATGCTAGCCTCTCCTAATTACAACCAGGATTGTAATTGGTATCTTGATTTCGGAGGTACAAATCACTTGACTAATAGTCTCAGTAACATGTATGTCAGCTCCGAATATCTTGGAAATAATTAGGTTCTCATTGGCAATGGTGCAGGTTTGCCTATTTCTCAACTTAGCTATGCTTCTTTTACTTCGTCACATAATCATATGTTTCATTTGAATAACCTGTTACATGTTCCCTCCATTACTAAAAATCTTATTAGGGTCAGCAATTCGCTAAAGATAATGTTGTATTCTTTGAATTTCATCCAACTTTCTTTGTTATGAAGGATCTAGAACCTGGACGGGCACTCCTTCGAGGGACTCTACATGA

mRNA sequence

ATGGAAACCTCTGAAACCAATTCCGAGATCTCAAGCGACTCGCAAAATGGCCAAATCGTTAACCCTGGGAATAAGATCTCCACTATGAAGCTGACCGATGAAAACTTCCTGATGTGGAAGTTCCAGATCCTCACTGCTCTCGAAGGTCACGATCTCGATGACCATATCAGTGTTGACTCTCAACCACCGCCTAAGACGATCCAGGTAAGTGAAAATGGAACAACGATCAGAAAAGAAGGCGATGTACAGGGTCATATTATGTATATTTTGTCTGGATTGGGGGCTAAATATGAGACTATGGTATCTGTTACCCTTGCTAAAACTGCTGTTCAAAATGCTAGTCAAAACTCAGTCCAAAACCCTTCCCCTCAACCTCAACAGCAAAAGTTTAGTAATGGTAAAGGTAGGGGCCGTTCTAATTTTGGTCAAAACAGAGGTGGAAGGAGTTTATGCACTCAATTTAGTTCCCATGGACAAATGAACTCTTCTGGTCTAAATTTTGGTCCTCAACAGTTCAGTGGTCAGTTTTCCCGGATGCAAGCAATGCTAGCCTCTCCTAATTACAACCAGGATTGTAATTGGTATCTTGATTTCGGAGGATCTAGAACCTGGACGGGCACTCCTTCGAGGGACTCTACATGA

Coding sequence (CDS)

ATGGAAACCTCTGAAACCAATTCCGAGATCTCAAGCGACTCGCAAAATGGCCAAATCGTTAACCCTGGGAATAAGATCTCCACTATGAAGCTGACCGATGAAAACTTCCTGATGTGGAAGTTCCAGATCCTCACTGCTCTCGAAGGTCACGATCTCGATGACCATATCAGTGTTGACTCTCAACCACCGCCTAAGACGATCCAGGTAAGTGAAAATGGAACAACGATCAGAAAAGAAGGCGATGTACAGGGTCATATTATGTATATTTTGTCTGGATTGGGGGCTAAATATGAGACTATGGTATCTGTTACCCTTGCTAAAACTGCTGTTCAAAATGCTAGTCAAAACTCAGTCCAAAACCCTTCCCCTCAACCTCAACAGCAAAAGTTTAGTAATGGTAAAGGTAGGGGCCGTTCTAATTTTGGTCAAAACAGAGGTGGAAGGAGTTTATGCACTCAATTTAGTTCCCATGGACAAATGAACTCTTCTGGTCTAAATTTTGGTCCTCAACAGTTCAGTGGTCAGTTTTCCCGGATGCAAGCAATGCTAGCCTCTCCTAATTACAACCAGGATTGTAATTGGTATCTTGATTTCGGAGGATCTAGAACCTGGACGGGCACTCCTTCGAGGGACTCTACATGA

Protein sequence

METSETNSEISSDSQNGQIVNPGNKISTMKLTDENFLMWKFQILTALEGHDLDDHISVDSQPPPKTIQVSENGTTIRKEGDVQGHIMYILSGLGAKYETMVSVTLAKTAVQNASQNSVQNPSPQPQQQKFSNGKGRGRSNFGQNRGGRSLCTQFSSHGQMNSSGLNFGPQQFSGQFSRMQAMLASPNYNQDCNWYLDFGGSRTWTGTPSRDST

Homology

[Close]

BLAST of Lag0011259 vs. NCBI nr
Match: XP_022148749.1 (uncharacterized protein LOC111017341 isoform X1 [Momordica charantia])

HSP 1 Score: 90.9 bits (224), Expect = 1.4e-14
Identity = 43/72 (59.72%), Postives = 53/72 (73.61%), Query Frame = 0


Query: 4  SETNSEISSDSQNG----QIVNPGNKISTMKLTDENFLMWKFQILTALEGHDLDDHISVD 63
          S  N+EI S   NG    Q +NPGNKIST+KLTDENFL+WKFQ+LT LEGH L+ +I  D
Sbjct: 3  SSANTEIDSTGTNGVQASQYINPGNKISTVKLTDENFLLWKFQVLTTLEGHGLESYIECD 62

Query: 64 SQPPPKTIQVSE 72
            PPPK IQ+++
Sbjct: 63 DDPPPKLIQIAD 74

[Close]

BLAST of Lag0011259 vs. NCBI nr
Match: XP_022148750.1 (uncharacterized protein LOC111017341 isoform X2 [Momordica charantia])

HSP 1 Score: 88.2 bits (217), Expect = 9.3e-14
Identity = 43/69 (62.32%), Postives = 50/69 (72.46%), Query Frame = 0


Query: 4  SETNSEISSDSQNG----QIVNPGNKISTMKLTDENFLMWKFQILTALEGHDLDDHISVD 63
          S  N+EI S   NG    Q +NPGNKIST+KLTDENFL+WKFQ+LT LEGH L+ +I  D
Sbjct: 3  SSANTEIDSTGTNGVQASQYINPGNKISTVKLTDENFLLWKFQVLTTLEGHGLESYIECD 62

Query: 64 SQPPPKTIQ 69
            PPPK IQ
Sbjct: 63 DDPPPKLIQ 71

[Close]

BLAST of Lag0011259 vs. NCBI nr
Match: XP_022159146.1 (uncharacterized protein LOC111025572 [Momordica charantia])

HSP 1 Score: 72.0 bits (175), Expect = 6.9e-09
Identity = 35/76 (46.05%), Postives = 54/76 (71.05%), Query Frame = 0


Query: 1  METSETNSEISSDSQNGQIVNPGNKISTMKLTDENFLMWKFQILTALEGHDLDDHISVDS 60
          + +SET+S +   +QN  IVNPGNKIST+KL DENFL+W+ QI TAL+GH L   I  ++
Sbjct: 3  ISSSETDSTVV--NQNSTIVNPGNKISTIKLNDENFLLWRLQITTALQGHGLGKFIDPEA 62

Query: 61 QPPPKTIQVSENGTTI 77
          + P + +Q ++  +++
Sbjct: 63 KIPSEFVQSADESSSV 76

[Close]

BLAST of Lag0011259 vs. NCBI nr
Match: KAA0068024.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK18104.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 67.0 bits (162), Expect = 2.2e-07
Identity = 57/173 (32.95%), Postives = 86/173 (49.71%), Query Frame = 0


Query: 1   METSETNSEISSDSQNGQIVNPGNKISTMKLTDENFLMWKFQILTALEGHDLDDHISVDS 60
           +E +E +S I+      QI   GNKIS +KL D+NFL+WKFQILTALE +D+++ +  +S
Sbjct: 10  VENTEASSPIN------QIFGSGNKISLVKLNDDNFLLWKFQILTALEAYDMENFLESES 69

Query: 61  QPPPKTIQVSENGTTI-----RKEGDVQGHIMYILSGLGAKYETMVSVTLAKTAVQ--NA 120
           +PP K +  + + +T        E     +   ++S        +V+ T  K A      
Sbjct: 70  EPPTKYLTSTGSSSTSATRTPNPEYKESQNESKLISETALPSVNIVTQTTEKGAESYIRT 129

Query: 121 SQNSVQNPSPQPQQQKFSNGKGRGRSNFGQNRGGRS-----LCTQFSSHGQMN 162
           SQN+  N     Q+     G+G GRSN G  RG R+     +CT+       N
Sbjct: 130 SQNNYHNNHSYNQR----GGRGNGRSNSG-GRGNRNKPQCQICTKLGHSADSN 171

[Close]

BLAST of Lag0011259 vs. NCBI nr
Match: KAA0038261.1 (putative inactive receptor-like protein kinase [Cucumis melo var. makuwa])

HSP 1 Score: 66.2 bits (160), Expect = 3.8e-07
Identity = 36/84 (42.86%), Postives = 51/84 (60.71%), Query Frame = 0


Query: 1  METSETNSEISSDSQN-----GQIVNPGNKISTMKLTDENFLMWKFQILTALEGHDLDDH 60
          M  +  +S +S DS        QI + G+KIS +KL D+NFL+WKFQILT LE +DL+ +
Sbjct: 1  MSNASDSSILSEDSSTDPSFISQIFSSGSKISLVKLRDDNFLLWKFQILTTLEAYDLESY 60

Query: 61 ISVDSQPPPKTIQVSENGTTIRKE 80
          +   ++PP K I    N T+I  E
Sbjct: 61 LESIAKPPIKYINTPSNQTSIATE 84

[Close]

BLAST of Lag0011259 vs. ExPASy TrEMBL
Match: A0A6J1D4X2 (uncharacterized protein LOC111017341 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111017341 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 7.0e-15
Identity = 43/72 (59.72%), Postives = 53/72 (73.61%), Query Frame = 0


Query: 4  SETNSEISSDSQNG----QIVNPGNKISTMKLTDENFLMWKFQILTALEGHDLDDHISVD 63
          S  N+EI S   NG    Q +NPGNKIST+KLTDENFL+WKFQ+LT LEGH L+ +I  D
Sbjct: 3  SSANTEIDSTGTNGVQASQYINPGNKISTVKLTDENFLLWKFQVLTTLEGHGLESYIECD 62

Query: 64 SQPPPKTIQVSE 72
            PPPK IQ+++
Sbjct: 63 DDPPPKLIQIAD 74

[Close]

BLAST of Lag0011259 vs. ExPASy TrEMBL
Match: A0A6J1D3S9 (uncharacterized protein LOC111017341 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111017341 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 4.5e-14
Identity = 43/69 (62.32%), Postives = 50/69 (72.46%), Query Frame = 0


Query: 4  SETNSEISSDSQNG----QIVNPGNKISTMKLTDENFLMWKFQILTALEGHDLDDHISVD 63
          S  N+EI S   NG    Q +NPGNKIST+KLTDENFL+WKFQ+LT LEGH L+ +I  D
Sbjct: 3  SSANTEIDSTGTNGVQASQYINPGNKISTVKLTDENFLLWKFQVLTTLEGHGLESYIECD 62

Query: 64 SQPPPKTIQ 69
            PPPK IQ
Sbjct: 63 DDPPPKLIQ 71

[Close]

BLAST of Lag0011259 vs. ExPASy TrEMBL
Match: A0A6J1E314 (uncharacterized protein LOC111025572 OS=Momordica charantia OX=3673 GN=LOC111025572 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 3.4e-09
Identity = 35/76 (46.05%), Postives = 54/76 (71.05%), Query Frame = 0


Query: 1  METSETNSEISSDSQNGQIVNPGNKISTMKLTDENFLMWKFQILTALEGHDLDDHISVDS 60
          + +SET+S +   +QN  IVNPGNKIST+KL DENFL+W+ QI TAL+GH L   I  ++
Sbjct: 3  ISSSETDSTVV--NQNSTIVNPGNKISTIKLNDENFLLWRLQITTALQGHGLGKFIDPEA 62

Query: 61 QPPPKTIQVSENGTTI 77
          + P + +Q ++  +++
Sbjct: 63 KIPSEFVQSADESSSV 76

[Close]

BLAST of Lag0011259 vs. ExPASy TrEMBL
Match: A0A5D3D3G2 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G00260 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.1e-07
Identity = 57/173 (32.95%), Postives = 86/173 (49.71%), Query Frame = 0


Query: 1   METSETNSEISSDSQNGQIVNPGNKISTMKLTDENFLMWKFQILTALEGHDLDDHISVDS 60
           +E +E +S I+      QI   GNKIS +KL D+NFL+WKFQILTALE +D+++ +  +S
Sbjct: 10  VENTEASSPIN------QIFGSGNKISLVKLNDDNFLLWKFQILTALEAYDMENFLESES 69

Query: 61  QPPPKTIQVSENGTTI-----RKEGDVQGHIMYILSGLGAKYETMVSVTLAKTAVQ--NA 120
           +PP K +  + + +T        E     +   ++S        +V+ T  K A      
Sbjct: 70  EPPTKYLTSTGSSSTSATRTPNPEYKESQNESKLISETALPSVNIVTQTTEKGAESYIRT 129

Query: 121 SQNSVQNPSPQPQQQKFSNGKGRGRSNFGQNRGGRS-----LCTQFSSHGQMN 162
           SQN+  N     Q+     G+G GRSN G  RG R+     +CT+       N
Sbjct: 130 SQNNYHNNHSYNQR----GGRGNGRSNSG-GRGNRNKPQCQICTKLGHSADSN 171

[Close]

BLAST of Lag0011259 vs. ExPASy TrEMBL
Match: A0A5A7T9J7 (Putative inactive receptor-like protein kinase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold270G001110 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 1.8e-07
Identity = 36/84 (42.86%), Postives = 51/84 (60.71%), Query Frame = 0


Query: 1  METSETNSEISSDSQN-----GQIVNPGNKISTMKLTDENFLMWKFQILTALEGHDLDDH 60
          M  +  +S +S DS        QI + G+KIS +KL D+NFL+WKFQILT LE +DL+ +
Sbjct: 1  MSNASDSSILSEDSSTDPSFISQIFSSGSKISLVKLRDDNFLLWKFQILTTLEAYDLESY 60

Query: 61 ISVDSQPPPKTIQVSENGTTIRKE 80
          +   ++PP K I    N T+I  E
Sbjct: 61 LESIAKPPIKYINTPSNQTSIATE 84

The following BLAST results are available for this feature:

BLAST of Lag0011259 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022148749.1	1.4e-14	59.72	uncharacterized protein LOC111017341 isoform X1 [Momordica charantia]	[more]
XP_022148750.1	9.3e-14	62.32	uncharacterized protein LOC111017341 isoform X2 [Momordica charantia]	[more]
XP_022159146.1	6.9e-09	46.05	uncharacterized protein LOC111025572 [Momordica charantia]	[more]
KAA0068024.1	2.2e-07	32.95	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0038261.1	3.8e-07	42.86	putative inactive receptor-like protein kinase [Cucumis melo var. makuwa]	[more]

BLAST of Lag0011259 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0011259 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D4X2	7.0e-15	59.72	uncharacterized protein LOC111017341 isoform X1 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1D3S9	4.5e-14	62.32	uncharacterized protein LOC111017341 isoform X2 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1E314	3.4e-09	46.05	uncharacterized protein LOC111025572 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]
A0A5D3D3G2	1.1e-07	32.95	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7T9J7	1.8e-07	42.86	Putative inactive receptor-like protein kinase OS=Cucumis melo var. makuwa OX=11...	[more]

BLAST of Lag0011259 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 114..155
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0011259.1	Lag0011259.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044237	cellular metabolic process
cellular_component	GO:0016020	membrane