Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAATCAGGGAAGAACGCAATGGAATCAATGAAGGAATCGGCTGCCAATGTTGCAGCGTCTGCAAGGGCTGGCATGGAGAAGACCAAAGCCACTGTACAGGAGAAGGTTTAGGGTTTTCTAATATTCCATTCATCTTTAATATTATTATATATTCTTTAGTTTTTGAAATAATGTATTTGATAGTTTTGGTTTCTGAGATAAGATTGTTTTTTTAATGTTTTTATTATTCTGTTAGATGGAGAAGGTTACGGCCCATGACCCCTTGGCGAAAGAAATGGCAGAGGAGAAGAAACTGGCGAAAATTCACGAGGCAGAGCTCAACAAACAGGAGGCGCGTGAGCACAACGCCGCCATGAGACAGGCGGCAACGGCGACCACCACGCATGGGACGCACCCGACAACCCACGGGACGGCGACATACTCCACCACTGGAGTCCAGGGCCATACCACTGGGACCCAGCAGATGTCGGCCGTGCCCGGGCATGGCACCGGGCAGCCCACGGGCCGAGTGACCGAGGGCATCGTTGGGGCGCACCCCATTGGGACTGAGACGCGTACTGAGAGGACGACAACGGCCCACAACACCAGGGTTGGAGGTGGCGGCGCAACCAAGTACAGCACCGGCGGTGGCTATAGTTAA
mRNA sequence
ATGCAATCAGGGAAGAACGCAATGGAATCAATGAAGGAATCGGCTGCCAATGTTGCAGCGTCTGCAAGGGCTGGCATGGAGAAGACCAAAGCCACTGTACAGGAGAAGATGGAGAAGGTTACGGCCCATGACCCCTTGGCGAAAGAAATGGCAGAGGAGAAGAAACTGGCGAAAATTCACGAGGCAGAGCTCAACAAACAGGAGGCGCGTGAGCACAACGCCGCCATGAGACAGGCGGCAACGGCGACCACCACGCATGGGACGCACCCGACAACCCACGGGACGGCGACATACTCCACCACTGGAGTCCAGGGCCATACCACTGGGACCCAGCAGATGTCGGCCGTGCCCGGGCATGGCACCGGGCAGCCCACGGGCCGAGTGACCGAGGGCATCGTTGGGGCGCACCCCATTGGGACTGAGACGCGTACTGAGAGGACGACAACGGCCCACAACACCAGGGTTGGAGGTGGCGGCGCAACCAAGTACAGCACCGGCGGTGGCTATAGTTAA
Coding sequence (CDS)
ATGCAATCAGGGAAGAACGCAATGGAATCAATGAAGGAATCGGCTGCCAATGTTGCAGCGTCTGCAAGGGCTGGCATGGAGAAGACCAAAGCCACTGTACAGGAGAAGATGGAGAAGGTTACGGCCCATGACCCCTTGGCGAAAGAAATGGCAGAGGAGAAGAAACTGGCGAAAATTCACGAGGCAGAGCTCAACAAACAGGAGGCGCGTGAGCACAACGCCGCCATGAGACAGGCGGCAACGGCGACCACCACGCATGGGACGCACCCGACAACCCACGGGACGGCGACATACTCCACCACTGGAGTCCAGGGCCATACCACTGGGACCCAGCAGATGTCGGCCGTGCCCGGGCATGGCACCGGGCAGCCCACGGGCCGAGTGACCGAGGGCATCGTTGGGGCGCACCCCATTGGGACTGAGACGCGTACTGAGAGGACGACAACGGCCCACAACACCAGGGTTGGAGGTGGCGGCGCAACCAAGTACAGCACCGGCGGTGGCTATAGTTAA
Protein sequence
MQSGKNAMESMKESAANVAASARAGMEKTKATVQEKMEKVTAHDPLAKEMAEEKKLAKIHEAELNKQEAREHNAAMRQAATATTTHGTHPTTHGTATYSTTGVQGHTTGTQQMSAVPGHGTGQPTGRVTEGIVGAHPIGTETRTERTTTAHNTRVGGGGATKYSTGGGYS
Homology
BLAST of Lag0011251 vs. NCBI nr
Match:
XP_022924969.1 (late embryogenesis abundant protein 46 [Cucurbita moschata] >XP_023518250.1 late embryogenesis abundant protein 46 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 264.6 bits (675), Expect = 5.8e-67
Identity = 148/171 (86.55%), Postives = 158/171 (92.40%), Query Frame = 0
Query: 1 MQSGKNAMESMKESAANVAASARAGMEKTKATVQEKMEKVTAHDPLAKEMAEEKKLAKIH 60
MQSGKNAMESMKESAANVAASA+AGM+KTKATVQEKMEKVTA DPLAKE+AEEKK AKIH
Sbjct: 1 MQSGKNAMESMKESAANVAASAKAGMDKTKATVQEKMEKVTARDPLAKEIAEEKKQAKIH 60
Query: 61 EAELNKQEAREHNAAMRQAATATTTHGTHPTTHGTATYSTTGVQGHTTGTQQMSAVPGHG 120
EAEL+KQEAREHNAAM+QA TAT THG HPTTHGTATYSTTG QG+TTGTQQMSAVPGHG
Sbjct: 61 EAELHKQEAREHNAAMKQATTATATHGMHPTTHGTATYSTTGAQGYTTGTQQMSAVPGHG 120
Query: 121 TGQPTGRVTEGIVGAHPIGTETRTERTTTAHNTRVGGGG-ATKYSTGGGYS 171
TGQPTG+VTEG+VG HPIG +T T RTTTAHN VGGGG AT+YSTGGGYS
Sbjct: 121 TGQPTGQVTEGVVGTHPIGHQTGTGRTTTAHNPNVGGGGDATRYSTGGGYS 171
BLAST of Lag0011251 vs. NCBI nr
Match:
XP_022966467.1 (late embryogenesis abundant protein 46 [Cucurbita maxima])
HSP 1 Score: 264.2 bits (674), Expect = 7.6e-67
Identity = 146/170 (85.88%), Postives = 156/170 (91.76%), Query Frame = 0
Query: 1 MQSGKNAMESMKESAANVAASARAGMEKTKATVQEKMEKVTAHDPLAKEMAEEKKLAKIH 60
MQSGKNAMESMKESAANVAASA+AGM+KTKATVQEKMEKVTA DPLAKE+AEEKK AKIH
Sbjct: 1 MQSGKNAMESMKESAANVAASAKAGMDKTKATVQEKMEKVTARDPLAKEIAEEKKQAKIH 60
Query: 61 EAELNKQEAREHNAAMRQAATATTTHGTHPTTHGTATYSTTGVQGHTTGTQQMSAVPGHG 120
EAEL+KQEAR+HNAAM+QA TAT THG HPTTHGTATYSTTG QG+TTGTQQMSAVPGHG
Sbjct: 61 EAELHKQEARQHNAAMKQATTATATHGMHPTTHGTATYSTTGAQGYTTGTQQMSAVPGHG 120
Query: 121 TGQPTGRVTEGIVGAHPIGTETRTERTTTAHNTRVGGGGATKYSTGGGYS 171
TGQPT RVTEG+VG HPIG +T T RTTTAHN VGGG AT+YSTGGGYS
Sbjct: 121 TGQPTDRVTEGVVGTHPIGHQTGTGRTTTAHNPNVGGGDATRYSTGGGYS 170
BLAST of Lag0011251 vs. NCBI nr
Match:
KAG6595576.1 (18 kDa seed maturation protein, partial [Cucurbita argyrosperma subsp. sororia] >KAG7027558.1 18 kDa seed maturation protein [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 264.2 bits (674), Expect = 7.6e-67
Identity = 148/172 (86.05%), Postives = 158/172 (91.86%), Query Frame = 0
Query: 1 MQSGKNAMESMKESAANVAASARAGMEKTKATVQEKMEKVTAHDPLAKEMAEEKKLAKIH 60
MQSGKNAMESMKESAANVAASA+AGM+KTKATVQEKMEKVTA DPLAKE+AEEKK AKIH
Sbjct: 1 MQSGKNAMESMKESAANVAASAKAGMDKTKATVQEKMEKVTARDPLAKEIAEEKKQAKIH 60
Query: 61 EAELNKQEAREHNAAMRQAATATTTHGTHPTTHGTATYSTTGVQGHTTGTQQMSAVPGHG 120
EAEL+KQEAREHNAAM+QA TAT THG HPTTHGTATYSTTG QG+TTGTQQMSAVPGHG
Sbjct: 61 EAELHKQEAREHNAAMKQATTATATHGMHPTTHGTATYSTTGAQGYTTGTQQMSAVPGHG 120
Query: 121 TGQPTGRVTEGIVGAHPIGTETRTERTTTAHNTRVGGGG--ATKYSTGGGYS 171
TGQPTG+VTEG+VG HPIG +T T RTTTAHN VGGGG AT+YSTGGGYS
Sbjct: 121 TGQPTGQVTEGVVGTHPIGHQTGTGRTTTAHNPNVGGGGGDATRYSTGGGYS 172
BLAST of Lag0011251 vs. NCBI nr
Match:
XP_038883398.1 (11 kDa late embryogenesis abundant protein [Benincasa hispida])
HSP 1 Score: 240.0 bits (611), Expect = 1.5e-59
Identity = 141/175 (80.57%), Postives = 151/175 (86.29%), Query Frame = 0
Query: 1 MQSGKNAMESMKESAANVAASARAGMEKTKATVQEKMEKVTAHDPLAKEMAEEKKLAKIH 60
MQSGK A+ESMKESAANVAASA+AGM+KTKATVQEKMEKVTAHDPLAKE+AEEKK AKIH
Sbjct: 1 MQSGKKAVESMKESAANVAASAKAGMDKTKATVQEKMEKVTAHDPLAKEIAEEKKQAKIH 60
Query: 61 EAELNKQEAREHNAAMRQAATATT-THGTHPTTHGTATYSTTGVQGHTTGTQQMSAVPGH 120
EAELNKQEAREHNAA+RQAATA THGTHPTTH TATYST+G G+TTGTQQMSA+PGH
Sbjct: 61 EAELNKQEAREHNAAVRQAATAAAGTHGTHPTTHPTATYSTSGAHGYTTGTQQMSALPGH 120
Query: 121 GTGQPTGRVTEGIVGAHPIGTETRTERTTTAHNTRVGG----GGATKYSTGGGYS 171
GTGQPTG EG+VGAHPIGTET T RTTTAHN VGG G T TGGG+S
Sbjct: 121 GTGQPTGPFVEGVVGAHPIGTETGTGRTTTAHNPLVGGRTGYGTQTGTGTGGGHS 175
BLAST of Lag0011251 vs. NCBI nr
Match:
KGN54793.1 (hypothetical protein Csa_011934 [Cucumis sativus])
HSP 1 Score: 236.5 bits (602), Expect = 1.7e-58
Identity = 139/174 (79.89%), Postives = 149/174 (85.63%), Query Frame = 0
Query: 1 MQSGKNAMESMKESAANVAASARAGMEKTKATVQEKMEKVTAHDPLAKEMAEEKKLAKIH 60
MQSGK A+ESMKESAANVAASA+AGM+KTKATVQEKMEKVTA DPLAKE+AEEKK AKIH
Sbjct: 1 MQSGKKAVESMKESAANVAASAKAGMDKTKATVQEKMEKVTARDPLAKEIAEEKKEAKIH 60
Query: 61 EAELNKQEAREHNAAMRQAAT--ATTTHGTHPTTHGTATYSTTGVQGHTTGTQQMSAVPG 120
EAELNKQEAR+HNAA+RQAAT A THGTHPTTH TATYSTTG G+TTGTQQ SA+PG
Sbjct: 61 EAELNKQEARQHNAAVRQAATGAAAATHGTHPTTHSTATYSTTGAHGYTTGTQQTSALPG 120
Query: 121 HGTGQPTGRVTEGIVGAHPIGTETRTERTTTAHNTRVGGGG--ATKYSTGGGYS 171
HGTGQPTG VTEG+VGAHPIGTET T RTTTAHN GGG T TGG Y+
Sbjct: 121 HGTGQPTGLVTEGVVGAHPIGTETGTGRTTTAHNPLAGGGTGYGTGTRTGGSYT 174
BLAST of Lag0011251 vs. ExPASy Swiss-Prot
Match:
Q01417 (18 kDa seed maturation protein OS=Glycine max OX=3847 GN=GMPM1 PE=2 SV=1)
HSP 1 Score: 163.3 bits (412), Expect = 2.4e-39
Identity = 104/172 (60.47%), Postives = 123/172 (71.51%), Query Frame = 0
Query: 1 MQSGKNAMESMKESAANVAASARAGMEKTKATVQEKMEKVTAHDPLAKEMAEEKKLAKIH 60
MQ GK A ES+KE+A N+ ASA+AGMEKTKATVQEK E++TA DP+ KE+A +KK AK++
Sbjct: 1 MQGGKKAGESIKETATNIGASAKAGMEKTKATVQEKAERMTARDPVQKELATQKKEAKMN 60
Query: 61 EAELNKQEAREHNAAMRQAATAT--TTHGTHP--TTHGTATYSTTGVQGHTTGTQQMSAV 120
+AEL+KQ AR+HN A +Q+AT HG H T GTATYSTTG G G Q SA+
Sbjct: 61 QAELDKQAARQHNTAAKQSATTAGHMGHGHHTTGTGTGTATYSTTGEYGQPMGAHQTSAM 120
Query: 121 PGHGTGQPTGRVTEGIVGAHPIGTETRTERTTTAHNTRVGG-GGATKYSTGG 168
PGHGTGQPTG VTEG+VG+HPIGT T TAHNTR GG Y TGG
Sbjct: 121 PGHGTGQPTGHVTEGVVGSHPIGTNRGPGGTATAHNTRAGGKPNDYGYGTGG 172
BLAST of Lag0011251 vs. ExPASy Swiss-Prot
Match:
Q9FG31 (Late embryogenesis abundant protein 46 OS=Arabidopsis thaliana OX=3702 GN=LEA46 PE=2 SV=1)
HSP 1 Score: 159.8 bits (403), Expect = 2.6e-38
Identity = 99/163 (60.74%), Postives = 122/163 (74.85%), Query Frame = 0
Query: 8 MESMKESAANVAASARAGMEKTKATVQEKMEKVTAHDPLAKEMAEEKKLAKIHEAELNKQ 67
M+SMKE+A+N+AASA++GM+KTKAT++EK EK+ DP+ K+MA + K KI++AE+ K+
Sbjct: 1 MQSMKETASNIAASAKSGMDKTKATLEEKAEKMKTRDPVQKQMATQVKEDKINQAEMQKR 60
Query: 68 EAREHNAAMRQAATATTTHGTHPTTHGTATYSTTGVQGHTTGTQQMSAVPGHGTGQPTGR 127
E R+HNAAM++AA A T G GTAT+STTG GH TGT QMSA+PGHGTGQ T R
Sbjct: 61 ETRQHNAAMKEAAGAGTGLGL-----GTATHSTTGQVGHGTGTHQMSALPGHGTGQLTDR 120
Query: 128 VTEGIVGAHPIGTETRTERTTTAHNTRVGGGGATKYSTGGGYS 171
V EG PIG T T R TTAHNT VGGGGAT Y TGGGY+
Sbjct: 121 VVEGTAVTDPIGRNTGTGR-TTAHNTHVGGGGATGYGTGGGYT 157
BLAST of Lag0011251 vs. ExPASy Swiss-Prot
Match:
P46515 (11 kDa late embryogenesis abundant protein OS=Helianthus annuus OX=4232 PE=2 SV=1)
HSP 1 Score: 107.5 bits (267), Expect = 1.6e-22
Identity = 71/110 (64.55%), Postives = 82/110 (74.55%), Query Frame = 0
Query: 1 MQSGKNAMESMKESAANVAASARAGMEKTKATVQEKMEKVTAHDPLAKEMAEEKKLAKIH 60
MQSGKNA S KE+AANVAASA+AGMEKTKA++QEK EK+TAHDP+ KEMA EKK + H
Sbjct: 1 MQSGKNAAASAKETAANVAASAKAGMEKTKASLQEKGEKMTAHDPMQKEMAREKKEERKH 60
Query: 61 EAELNKQEAREHNAAMRQAATATTTHGTHPTTHGTATYSTTGVQGHTTGT 111
EAE KQ A+EHNAA +Q TT GT GT +Y+TT V GH TGT
Sbjct: 61 EAEYEKQAAKEHNAAQKQ----TTGIGT-----GTHSYTTTNVTGHRTGT 101
BLAST of Lag0011251 vs. ExPASy Swiss-Prot
Match:
Q00747 (Protein LE25 OS=Solanum lycopersicum OX=4081 GN=LE25 PE=2 SV=1)
HSP 1 Score: 61.6 bits (148), Expect = 9.8e-09
Identity = 49/108 (45.37%), Postives = 64/108 (59.26%), Query Frame = 0
Query: 1 MQSGKNAMESMKESAANVAASARAGMEKTKATVQEKMEKVTAHDPLAKEMAEEKKLAKIH 60
MQ+GK+A A++A+AGMEKTKA VQEK E++T DPL KEMA EKK ++
Sbjct: 1 MQTGKDA-----------ASAAKAGMEKTKANVQEKAERMTTRDPLKKEMATEKKEDRVA 60
Query: 61 EAELNKQEAREHNAAMRQAATATTTHGTHPTTHGTATYSTTGVQGHTT 109
AE+ K++A+ +AA +Q A T T GT Y TG HTT
Sbjct: 61 AAEMGKRDAKAQHAAEKQGAATTGT--------GTTGYGATG--NHTT 87
BLAST of Lag0011251 vs. ExPASy Swiss-Prot
Match:
P09441 (Late embryogenesis abundant protein D-113 OS=Gossypium hirsutum OX=3635 PE=2 SV=2)
HSP 1 Score: 52.8 bits (125), Expect = 4.5e-06
Identity = 61/164 (37.20%), Postives = 82/164 (50.00%), Query Frame = 0
Query: 8 MESMKESAANVAASARAGMEKTKATVQEKMEKVTAHDPLAKEMAEEKKLAKIHEAELNKQ 67
M+SMK++ AASA+AGMEK KA++QEK++++ DP KEMA E+K + +AEL KQ
Sbjct: 1 MQSMKDA----AASAKAGMEKAKASMQEKVDQMKTRDPNEKEMARERKEERQEDAELRKQ 60
Query: 68 EAREHNAAMRQAATATTTHGTHPTTHGTATYSTTGVQGHTTGTQQMSAVPGHGTGQPTGR 127
EAR HNA GT TT G T G G TG P G+G TGR
Sbjct: 61 EARHHNATAGHVG-GGGIGGTGYTTAGYNIGDTGGYGG--TGGHDNRGYPTAGSGYDTGR 120
Query: 128 VTEGIVGAHPIGTETRTERTTTAHN---TRVGGGGATKYSTGGG 169
+ + + G +T TT + T+ +T GG
Sbjct: 121 QDD--LSSMGFGGDTEGAYGTTGNQDFPNAASNNAGTRRNTRGG 155
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_022924969.1 | 5.8e-67 | 86.55 | late embryogenesis abundant protein 46 [Cucurbita moschata] >XP_023518250.1 late... | [more] |
XP_022966467.1 | 7.6e-67 | 85.88 | late embryogenesis abundant protein 46 [Cucurbita maxima] | [more] |
KAG6595576.1 | 7.6e-67 | 86.05 | 18 kDa seed maturation protein, partial [Cucurbita argyrosperma subsp. sororia] ... | [more] |
XP_038883398.1 | 1.5e-59 | 80.57 | 11 kDa late embryogenesis abundant protein [Benincasa hispida] | [more] |
KGN54793.1 | 1.7e-58 | 79.89 | hypothetical protein Csa_011934 [Cucumis sativus] | [more] |
Match Name | E-value | Identity | Description | |
Q01417 | 2.4e-39 | 60.47 | 18 kDa seed maturation protein OS=Glycine max OX=3847 GN=GMPM1 PE=2 SV=1 | [more] |
Q9FG31 | 2.6e-38 | 60.74 | Late embryogenesis abundant protein 46 OS=Arabidopsis thaliana OX=3702 GN=LEA46 ... | [more] |
P46515 | 1.6e-22 | 64.55 | 11 kDa late embryogenesis abundant protein OS=Helianthus annuus OX=4232 PE=2 SV=... | [more] |
Q00747 | 9.8e-09 | 45.37 | Protein LE25 OS=Solanum lycopersicum OX=4081 GN=LE25 PE=2 SV=1 | [more] |
P09441 | 4.5e-06 | 37.20 | Late embryogenesis abundant protein D-113 OS=Gossypium hirsutum OX=3635 PE=2 SV=... | [more] |