Lag0009649 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0009649
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Phospho-N-acetylmuramoyl-pentapeptide-transferase, putative
Location	chr9: 41099035 .. 41099409 (-)
RNA-Seq Expression	Lag0009649
Synteny	Lag0009649

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAAATCGAGTTTCATCGCCGCCTCCGTCGCCGCCGCTTCCGCCGCCGCCGCCGTCTCTGCCTCCCCCTCTTCCTCTACCCTTGTCTGTAACCCAAAAGTTCAATTACCTCGCCAGGTAAGCCTTCATCGAAAAATCATCCATATCCCTCGTTAAAAAGTTACCCCTTTTGGAACTTGAACTTTCAATTTGTTCTTCTGGGTTGAAAATTTCTCGTCTTTTTTTTTTCTTTTTTTGCTGTTTTTGAGATTTGGGTAATTTAATTTGCAGGAGGTAAAGGAAGGGGAGAATTCTTCTTCTTCGGCGGATAAATTTGCTCCCAAATTTGACGGATTGAGATTTATTGAAACTCTGGTCACGGCTCACAGATGA

mRNA sequence

ATGAAGAAATCGAGTTTCATCGCCGCCTCCGTCGCCGCCGCTTCCGCCGCCGCCGCCGTCTCTGCCTCCCCCTCTTCCTCTACCCTTGTCTGTAACCCAAAAGTTCAATTACCTCGCCAGGAGGTAAAGGAAGGGGAGAATTCTTCTTCTTCGGCGGATAAATTTGCTCCCAAATTTGACGGATTGAGATTTATTGAAACTCTGGTCACGGCTCACAGATGA

Coding sequence (CDS)

ATGAAGAAATCGAGTTTCATCGCCGCCTCCGTCGCCGCCGCTTCCGCCGCCGCCGCCGTCTCTGCCTCCCCCTCTTCCTCTACCCTTGTCTGTAACCCAAAAGTTCAATTACCTCGCCAGGAGGTAAAGGAAGGGGAGAATTCTTCTTCTTCGGCGGATAAATTTGCTCCCAAATTTGACGGATTGAGATTTATTGAAACTCTGGTCACGGCTCACAGATGA

Protein sequence

MKKSSFIAASVAAASAAAAVSASPSSSTLVCNPKVQLPRQEVKEGENSSSSADKFAPKFDGLRFIETLVTAHR

Homology

[Close]

BLAST of Lag0009649 vs. NCBI nr
Match: XP_038902353.1 (uncharacterized protein LOC120088987 [Benincasa hispida])

HSP 1 Score: 114.4 bits (285), Expect = 4.2e-22
Identity = 65/73 (89.04%), Postives = 65/73 (89.04%), Query Frame = 0


Query: 1  MKKSSFIAASVAAASAAAAVSASPSSSTLVCNPKVQLPRQEVKEGENSSSSADKFAPKFD 60
          MKKS FIAASV    AAAAVSASPSSSTLVCNPKVQ PRQE KEGENSSSS DKFAPKFD
Sbjct: 1  MKKSGFIAASV----AAAAVSASPSSSTLVCNPKVQFPRQEGKEGENSSSSTDKFAPKFD 60

Query: 61 GLRFIETLVTAHR 74
          GLRFIETLVTAHR
Sbjct: 61 GLRFIETLVTAHR 69

[Close]

BLAST of Lag0009649 vs. NCBI nr
Match: XP_022970726.1 (uncharacterized protein LOC111469626 [Cucurbita maxima])

HSP 1 Score: 111.3 bits (277), Expect = 3.5e-21
Identity = 65/74 (87.84%), Postives = 68/74 (91.89%), Query Frame = 0


Query: 1  MKKSSFIAASVAAASAAAAVSASPSSSTLVCNPKVQLPRQEVKE-GENSSSSADKFAPKF 60
          MKKS FIAAS+AAAS  AAVSASPSSSTL C+PK+QLPRQE KE GENSSSSADKFAPKF
Sbjct: 1  MKKSGFIAASIAAAS--AAVSASPSSSTLFCDPKIQLPRQEEKELGENSSSSADKFAPKF 60

Query: 61 DGLRFIETLVTAHR 74
          DGLRFIETLVTAHR
Sbjct: 61 DGLRFIETLVTAHR 72

[Close]

BLAST of Lag0009649 vs. NCBI nr
Match: KAG7010372.1 (hypothetical protein SDJN02_27165, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 110.9 bits (276), Expect = 4.6e-21
Identity = 62/73 (84.93%), Postives = 66/73 (90.41%), Query Frame = 0


Query: 1  MKKSSFIAASVAAASAAAAVSASPSSSTLVCNPKVQLPRQEVKEGENSSSSADKFAPKFD 60
          MKKS FIAASV AA+AAAA SASPSSST+ CN KVQLPRQE KEGEN SSSADKFAPKFD
Sbjct: 1  MKKSGFIAASVVAAAAAAAESASPSSSTIFCNLKVQLPRQEGKEGENPSSSADKFAPKFD 60

Query: 61 GLRFIETLVTAHR 74
          GL+FI+TLVTAHR
Sbjct: 61 GLKFIKTLVTAHR 73

[Close]

BLAST of Lag0009649 vs. NCBI nr
Match: XP_022140652.1 (uncharacterized protein LOC111011258 [Momordica charantia])

HSP 1 Score: 110.2 bits (274), Expect = 7.9e-21
Identity = 64/73 (87.67%), Postives = 65/73 (89.04%), Query Frame = 0


Query: 1  MKKSSFIAASVAAASAAAAVSASPSSSTLVCNPKVQLPRQEVKEGENSSSSADKFAPKFD 60
          MKKS+FIAASVA AS  AAVSASPSSST VCNPKVQ PRQE K  ENSSSSADKFAPKFD
Sbjct: 1  MKKSAFIAASVAGAS--AAVSASPSSSTFVCNPKVQFPRQEGKVEENSSSSADKFAPKFD 60

Query: 61 GLRFIETLVTAHR 74
          GLRFIETLVTAHR
Sbjct: 61 GLRFIETLVTAHR 71

[Close]

BLAST of Lag0009649 vs. NCBI nr
Match: KAG7034915.1 (hypothetical protein SDJN02_01708, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 110.2 bits (274), Expect = 7.9e-21
Identity = 65/74 (87.84%), Postives = 67/74 (90.54%), Query Frame = 0


Query: 1  MKKSSFIAASVAAASAAAAVSASPSSSTLVCNPKVQLPRQEVKE-GENSSSSADKFAPKF 60
          MKKS FIAASV A  AAAAVSASPSSSTL C+PK+QLPRQE KE GENSSSSADKFAPKF
Sbjct: 1  MKKSGFIAASVTA--AAAAVSASPSSSTLFCDPKIQLPRQEEKELGENSSSSADKFAPKF 60

Query: 61 DGLRFIETLVTAHR 74
          DGLRFIETLVTAHR
Sbjct: 61 DGLRFIETLVTAHR 72

The following BLAST results are available for this feature:

BLAST of Lag0009649 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038902353.1	4.2e-22	89.04	uncharacterized protein LOC120088987 [Benincasa hispida]	[more]
XP_022970726.1	3.5e-21	87.84	uncharacterized protein LOC111469626 [Cucurbita maxima]	[more]
KAG7010372.1	4.6e-21	84.93	hypothetical protein SDJN02_27165, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022140652.1	7.9e-21	87.67	uncharacterized protein LOC111011258 [Momordica charantia]	[more]
KAG7034915.1	7.9e-21	87.84	hypothetical protein SDJN02_01708, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Lag0009649 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34683:SF2	EXPRESSED PROTEIN	coord: 1..73
None	No IPR available	PANTHER	PTHR34683	EXPRESSED PROTEIN-RELATED	coord: 1..73

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0009649.1	Lag0009649.1	mRNA