Lag0008300 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0008300
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionReverse transcriptase, RNA-dependent DNA polymerase
Locationchr9: 17062737 .. 17063621 (-)
RNA-Seq ExpressionLag0008300
SyntenyLag0008300
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCAACGCCAATTCAACCGGTTTTCCTGCCGCCTCCACCGGAACTACAAATTTCAGTAGTCCTCCGCTAAATCAACTGTTGAACCAAATAACCTCTATAAAGCTCGATAGAGGTAACTTTTTGTTATGGAAAAACCTGGCATTACCAATTTTACGCAGCTACAAACTGGAAGGGTATTTGTCTGGTTTGAAGCCCTATCCTCCGAAGTTTATTCAAGCTGCGACCAGCTCCTCTCCCCCATCGTCGACTGGAGAAGGAGCCATTGATGAAGCAACTGCAACAAGGCAGACAACTCCCAATCCAGATTATGAGTCGTGGATTGCCATTGATCAACTTCTATTGGGTTGGCTTTACAACTCTATGTCTCTTGAGGTAGCCACCCAAGTAATGGGATTCGAGAATGCTCAAGATCTGTGGGCAGCGGTTCAAGAGTTGTTCGGTGTTCAATCTCGAGCAGAGGAAGACTACTTACGTCAGGTATTTCAACAGTCAAGAAAAGGTAATTTAAAAATGGCTGACTATCTTCGTGTTATGAAAAATCACGCTGACAACTTAGGGCAAGCTGGGAGTCCAGTTACCACCCGATCTCTTGTGTCAGAAGTTCTTTTAGGGTTAGATGAAGAGTACAACCCTGTTGTGGAGATGATTCAAGGCAGAATAGGTGTGACCTGATCTGAGCTACAAGCTGAACTTCTCGTGTTTGAGAAGAGGCTTGAATTGCAGAACAACTTAAAGAGCTCGTTGACTCTCAGTGCAGCCACCTCAGTGAACATGGCTAGCTCCAAAGATACTGGTACACAGAGGAATCAAAGCTCATCGACCAATGGAAGATCAAACAATTTTGGCCGTGGAAATCTTCGAGGAGGAGGACAACGTGGCTGA

mRNA sequence

ATGGCCAACGCCAATTCAACCGGTTTTCCTGCCGCCTCCACCGGAACTACAAATTTCAGTAGTCCTCCGCTAAATCAACTGTTGAACCAAATAACCTCTATAAAGCTCGATAGAGGTAACTTTTTGTTATGGAAAAACCTGGCATTACCAATTTTACGCAGCTACAAACTGGAAGGGTATTTGTCTGGTTTGAAGCCCTATCCTCCGAAGTTTATTCAAGCTGCGACCAGCTCCTCTCCCCCATCGTCGACTGGAGAAGGAGCCATTGATGAAGCAACTGCAACAAGGCAGACAACTCCCAATCCAGATTATGAGTCGTGGATTGCCATTGATCAACTTCTATTGGGTTGGCTTTACAACTCTATGTCTCTTGAGGTAGCCACCCAAGTAATGGGATTCGAGAATGCTCAAGATCTGTGGGCAGCGGTTCAAGAGTTGTTCGGTGTTCAATCTCGAGCAGAGGAAGACTACTTACGTCAGGTATTTCAACAGTCAAGAAAAGGTAATTTAAAAATGGCTGACTATCTTCGTGTTATGAAAAATCACGCTGACAACTTAGGGCAAGCTGGGAGTCCAGTTACCACCCGATCTCTTGTGTCAGAAGTTCTTTTAGGGTTAGATGAAGAGTACAACCCTGTTGTGGAGATGATTCAAGGCAGAATAGCCACCTCAGTGAACATGGCTAGCTCCAAAGATACTGGTACACAGAGGAATCAAAGCTCATCGACCAATGGAAGATCAAACAATTTTGGCCGTGGAAATCTTCGAGGAGGAGGACAACGTGGCTGA

Coding sequence (CDS)

ATGGCCAACGCCAATTCAACCGGTTTTCCTGCCGCCTCCACCGGAACTACAAATTTCAGTAGTCCTCCGCTAAATCAACTGTTGAACCAAATAACCTCTATAAAGCTCGATAGAGGTAACTTTTTGTTATGGAAAAACCTGGCATTACCAATTTTACGCAGCTACAAACTGGAAGGGTATTTGTCTGGTTTGAAGCCCTATCCTCCGAAGTTTATTCAAGCTGCGACCAGCTCCTCTCCCCCATCGTCGACTGGAGAAGGAGCCATTGATGAAGCAACTGCAACAAGGCAGACAACTCCCAATCCAGATTATGAGTCGTGGATTGCCATTGATCAACTTCTATTGGGTTGGCTTTACAACTCTATGTCTCTTGAGGTAGCCACCCAAGTAATGGGATTCGAGAATGCTCAAGATCTGTGGGCAGCGGTTCAAGAGTTGTTCGGTGTTCAATCTCGAGCAGAGGAAGACTACTTACGTCAGGTATTTCAACAGTCAAGAAAAGGTAATTTAAAAATGGCTGACTATCTTCGTGTTATGAAAAATCACGCTGACAACTTAGGGCAAGCTGGGAGTCCAGTTACCACCCGATCTCTTGTGTCAGAAGTTCTTTTAGGGTTAGATGAAGAGTACAACCCTGTTGTGGAGATGATTCAAGGCAGAATAGCCACCTCAGTGAACATGGCTAGCTCCAAAGATACTGGTACACAGAGGAATCAAAGCTCATCGACCAATGGAAGATCAAACAATTTTGGCCGTGGAAATCTTCGAGGAGGAGGACAACGTGGCTGA

Protein sequence

MANANSTGFPAASTGTTNFSSPPLNQLLNQITSIKLDRGNFLLWKNLALPILRSYKLEGYLSGLKPYPPKFIQAATSSSPPSSTGEGAIDEATATRQTTPNPDYESWIAIDQLLLGWLYNSMSLEVATQVMGFENAQDLWAAVQELFGVQSRAEEDYLRQVFQQSRKGNLKMADYLRVMKNHADNLGQAGSPVTTRSLVSEVLLGLDEEYNPVVEMIQGRIATSVNMASSKDTGTQRNQSSSTNGRSNNFGRGNLRGGGQRG
Homology
BLAST of Lag0008300 vs. NCBI nr
Match: XP_022151683.1 (uncharacterized protein LOC111019598 [Momordica charantia])

HSP 1 Score: 246.1 bits (627), Expect = 3.3e-61
Identity = 146/284 (51.41%), Postives = 184/284 (64.79%), Query Frame = 0

Query: 10  PAASTGTTNFSSPPLNQLLNQITSIKLDRGNFLLWKNLALPILRSYKLEGYLSGLKPYPP 69
           PA  +G   F+SPPLNQLLNQITSIK+DRGNFLLW+NLALPILRSYKL  YL+G KP PP
Sbjct: 14  PAVVSGAV-FTSPPLNQLLNQITSIKMDRGNFLLWQNLALPILRSYKLFDYLTGDKPCPP 73

Query: 70  KFIQAATSSSPPSSTGEGAIDEATATRQTTPNPDYESWIAIDQLLLGWLYNSMSLEVATQ 129
             +        P+ T        ++    T NP YE+WI +D+LLLGWLYNSM+ +VA Q
Sbjct: 74  THL-------VPTDTPTNIEGSTSSQSSPTLNPTYEAWIVVDKLLLGWLYNSMAADVAMQ 133

Query: 130 VMGFENAQDLWAAVQELFGVQSRAEEDYLRQVFQQSRKGNLKMADYLRVMKNHADNLGQA 189
           VMGF  +++LW AVQELFGVQSRAE DYL+QVFQQ+ KG+L+M +YL++MK+HADNL  A
Sbjct: 134 VMGFSTSRELWTAVQELFGVQSRAEVDYLKQVFQQTCKGSLQMIEYLKLMKSHADNLALA 193

Query: 190 GSPVTTRSLVSEVLLGLDEEYNPVVEMIQGRIATS--------------VNMASSKDTGT 249
           GS V+ R LVS+VL GLDEEYNP+V  +QG++  S              +   +S  +G 
Sbjct: 194 GSSVSVRDLVSQVLTGLDEEYNPIVVAVQGKVNLSWSEMHAELLTYEKRLEYQNSLKSGI 253

Query: 250 QRNQSSS----------------TNGRSNNFGRGNLRGGG-QRG 263
             NQ+ +                TN  +N+ G    RGGG QRG
Sbjct: 254 PINQTQTPSVNYVDGRSFQTNQRTNNGNNSHGSNTHRGGGYQRG 289

BLAST of Lag0008300 vs. NCBI nr
Match: KAA0026100.1 (uncharacterized protein E6C27_scaffold19G00360 [Cucumis melo var. makuwa])

HSP 1 Score: 240.4 bits (612), Expect = 1.8e-59
Identity = 129/223 (57.85%), Postives = 161/223 (72.20%), Query Frame = 0

Query: 1   MANANSTGFPAASTGTTNFSSPPLNQLLNQITSIKLDRGNFLLWKNLALPILRSYKLEGY 60
           MANA  T  P  S  +  FS+PPLNQ+LNQ+ ++KLDR N+LLWK LALPIL+ YKLEG+
Sbjct: 1   MANAQPTAAP-PSLSSAGFSNPPLNQILNQLATVKLDRKNYLLWKTLALPILKGYKLEGH 60

Query: 61  LSGLKPYPPKFIQAATSSSPPSSTGEGAIDEATATRQTTP---NPDYESWIAIDQLLLGW 120
           L+G  P P  F+ +A SSS  + T EGA     A+   TP   N  +E W+  D LLLGW
Sbjct: 61  LTGETPCPSHFVLSA-SSSNTTVTEEGADATIGASSSITPRIVNSLFEQWVTTDLLLLGW 120

Query: 121 LYNSMSLEVATQVMGFENAQDLWAAVQELFGVQSRAEEDYLRQVFQQSRKGNLKMADYLR 180
           LYNSM+ +VA Q+MGF N +DLW A Q+ FGVQSRAEED+LRQ+ Q +RKGN KM +YL 
Sbjct: 121 LYNSMTPDVAIQLMGFTNVEDLWDATQDFFGVQSRAEEDFLRQMLQTTRKGNTKMEEYLL 180

Query: 181 VMKNHADNLGQAGSPVTTRSLVSEVLLGLDEEYNPVVEMIQGR 221
           VMK + DNLGQ GSPV  R+L+S+VLLGLDE YN V+ +IQG+
Sbjct: 181 VMKTNVDNLGQVGSPVPRRALISQVLLGLDEVYNLVIVVIQGK 221

BLAST of Lag0008300 vs. NCBI nr
Match: XP_038902487.1 (uncharacterized protein LOC120089143 [Benincasa hispida])

HSP 1 Score: 221.5 bits (563), Expect = 8.7e-54
Identity = 128/244 (52.46%), Postives = 163/244 (66.80%), Query Frame = 0

Query: 32  TSIKLDRGNFLLWKNLALPILRSYKLEGYLSGLKPYPPKFIQA---ATSSSPPSSTG--- 91
           T+IKLD+ N+LLW+NLALPILRSY+LEG+L+G  P PP+F  A   +T++ PP       
Sbjct: 43  TTIKLDQENYLLWRNLALPILRSYRLEGHLTGEDPCPPRFSVATDQSTATVPPGDEAGLG 102

Query: 92  ------------EGAIDEATATRQTTPNPDYESWIAIDQLLLGWLYNSMSLEVATQVMGF 151
                       +G    + ++     NP YES   +DQLLLGWLYN M+ EVA QVMG+
Sbjct: 103 GQYSGIASLTPQQGITTASNSSPVLQVNPFYESRTVVDQLLLGWLYNFMTAEVAMQVMGY 162

Query: 152 ENAQDLWAAVQELFGVQSRAEEDYLRQVFQQSRKGNLKMADYLRVMKNHADNLGQAGSPV 211
           EN + LWAA+QELFG+QSRA EDYLRQVFQQ+ KG +KM +YLRVMK H+DNLG  GSPV
Sbjct: 163 ENYKYLWAAIQELFGLQSRAGEDYLRQVFQQTCKGAMKMPEYLRVMKTHSDNLGLTGSPV 222

Query: 212 TTRSLVSEVLLGLDEEYNPVVEMIQGRIATSVNMASSKDTGTQRNQSSSTNGRSNNFGRG 258
            TR+LVS+VLLGLDEE+NP V  IQGR   S     ++    ++ Q+++ N R    G G
Sbjct: 223 PTRALVSQVLLGLDEEFNPFVATIQGRSEISWTNMQTELLAFEKRQTNNNNQRG---GSG 282

BLAST of Lag0008300 vs. NCBI nr
Match: TYJ96311.1 (uncharacterized protein E5676_scaffold1970G00140 [Cucumis melo var. makuwa])

HSP 1 Score: 216.1 bits (549), Expect = 3.7e-52
Identity = 116/204 (56.86%), Postives = 145/204 (71.08%), Query Frame = 0

Query: 1   MANANSTGFPAASTGTTNFSSPPLNQLLNQITSIKLDRGNFLLWKNLALPILRSYKLEGY 60
           MANA  T  P  S  +  FS+PPLNQ+LNQ+ ++KLDR N+LLWK LALPIL+ YKLEG+
Sbjct: 1   MANAQPTAAP-PSLSSAGFSNPPLNQILNQLATVKLDRKNYLLWKTLALPILKGYKLEGH 60

Query: 61  LSGLKPYPPKFIQAATSSSPPSSTGEGAIDEATATRQTTP---NPDYESWIAIDQLLLGW 120
           L+G  P P  F+ +A SSS  + T EGA     A+   TP   N  +E W+  D LLLGW
Sbjct: 61  LTGETPCPSHFVLSA-SSSNTTVTEEGADATIGASSSITPRIVNSLFEQWVTTDLLLLGW 120

Query: 121 LYNSMSLEVATQVMGFENAQDLWAAVQELFGVQSRAEEDYLRQVFQQSRKGNLKMADYLR 180
           LYNSM+ +VA Q+MGF N +DLW A Q+ FGVQSRAEED+LRQ+ Q +RKGN KM +YL 
Sbjct: 121 LYNSMTPDVAIQLMGFTNVEDLWDATQDFFGVQSRAEEDFLRQMLQTTRKGNTKMEEYLL 180

Query: 181 VMKNHADNLGQAGSPVTTRSLVSE 202
           VMK + DNLGQ GSPV  R+L+S+
Sbjct: 181 VMKTNVDNLGQVGSPVPRRALISQ 202

BLAST of Lag0008300 vs. NCBI nr
Match: KAA0067279.1 (uncharacterized protein E6C27_scaffold418G001000 [Cucumis melo var. makuwa])

HSP 1 Score: 207.6 bits (527), Expect = 1.3e-49
Identity = 108/199 (54.27%), Postives = 138/199 (69.35%), Query Frame = 0

Query: 5   NSTGFPAASTGTTNFSSPPLNQLLNQITSIKLDRGNFLLWKNLALPILRSYKLEGYLSGL 64
           N+      +T TT+F++P LNQ+LNQ+T+IKLDRGN+LLWK LALPIL+SYKL  +L G 
Sbjct: 3   NAAPISVTATPTTSFTNPLLNQILNQLTTIKLDRGNYLLWKTLALPILKSYKLNSHLFGE 62

Query: 65  KPYPPKFIQAATSSSPPSSTGEGAIDEATATRQT---TPNPDYESWIAIDQLLLGWLYNS 124
            P  PK I   T  +       G   + T++  T   T NP YE WI  D LLLGWLYNS
Sbjct: 63  SPCLPKIIMLTTQPNESIVENAGEPSQETSSSSTAVVTVNPKYERWITTDLLLLGWLYNS 122

Query: 125 MSLEVATQVMGFENAQDLWAAVQELFGVQSRAEEDYLRQVFQQSRKGNLKMADYLRVMKN 184
           M+ EV  Q+MGF NA+DLW A Q+LFG+QSRA+ED+L Q FQ ++KGNL M +YLR MKN
Sbjct: 123 MTPEVTIQLMGFTNAKDLWEATQDLFGIQSRAKEDFLHQTFQTTKKGNLNMEEYLRTMKN 182

Query: 185 HADNLGQAGSPVTTRSLVS 201
           + +NLGQA S V + ++VS
Sbjct: 183 NVNNLGQADSLVPSGAIVS 201

BLAST of Lag0008300 vs. ExPASy TrEMBL
Match: A0A6J1DCW4 (uncharacterized protein LOC111019598 OS=Momordica charantia OX=3673 GN=LOC111019598 PE=4 SV=1)

HSP 1 Score: 246.1 bits (627), Expect = 1.6e-61
Identity = 146/284 (51.41%), Postives = 184/284 (64.79%), Query Frame = 0

Query: 10  PAASTGTTNFSSPPLNQLLNQITSIKLDRGNFLLWKNLALPILRSYKLEGYLSGLKPYPP 69
           PA  +G   F+SPPLNQLLNQITSIK+DRGNFLLW+NLALPILRSYKL  YL+G KP PP
Sbjct: 14  PAVVSGAV-FTSPPLNQLLNQITSIKMDRGNFLLWQNLALPILRSYKLFDYLTGDKPCPP 73

Query: 70  KFIQAATSSSPPSSTGEGAIDEATATRQTTPNPDYESWIAIDQLLLGWLYNSMSLEVATQ 129
             +        P+ T        ++    T NP YE+WI +D+LLLGWLYNSM+ +VA Q
Sbjct: 74  THL-------VPTDTPTNIEGSTSSQSSPTLNPTYEAWIVVDKLLLGWLYNSMAADVAMQ 133

Query: 130 VMGFENAQDLWAAVQELFGVQSRAEEDYLRQVFQQSRKGNLKMADYLRVMKNHADNLGQA 189
           VMGF  +++LW AVQELFGVQSRAE DYL+QVFQQ+ KG+L+M +YL++MK+HADNL  A
Sbjct: 134 VMGFSTSRELWTAVQELFGVQSRAEVDYLKQVFQQTCKGSLQMIEYLKLMKSHADNLALA 193

Query: 190 GSPVTTRSLVSEVLLGLDEEYNPVVEMIQGRIATS--------------VNMASSKDTGT 249
           GS V+ R LVS+VL GLDEEYNP+V  +QG++  S              +   +S  +G 
Sbjct: 194 GSSVSVRDLVSQVLTGLDEEYNPIVVAVQGKVNLSWSEMHAELLTYEKRLEYQNSLKSGI 253

Query: 250 QRNQSSS----------------TNGRSNNFGRGNLRGGG-QRG 263
             NQ+ +                TN  +N+ G    RGGG QRG
Sbjct: 254 PINQTQTPSVNYVDGRSFQTNQRTNNGNNSHGSNTHRGGGYQRG 289

BLAST of Lag0008300 vs. ExPASy TrEMBL
Match: A0A5A7SIT7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold19G00360 PE=4 SV=1)

HSP 1 Score: 240.4 bits (612), Expect = 8.8e-60
Identity = 129/223 (57.85%), Postives = 161/223 (72.20%), Query Frame = 0

Query: 1   MANANSTGFPAASTGTTNFSSPPLNQLLNQITSIKLDRGNFLLWKNLALPILRSYKLEGY 60
           MANA  T  P  S  +  FS+PPLNQ+LNQ+ ++KLDR N+LLWK LALPIL+ YKLEG+
Sbjct: 1   MANAQPTAAP-PSLSSAGFSNPPLNQILNQLATVKLDRKNYLLWKTLALPILKGYKLEGH 60

Query: 61  LSGLKPYPPKFIQAATSSSPPSSTGEGAIDEATATRQTTP---NPDYESWIAIDQLLLGW 120
           L+G  P P  F+ +A SSS  + T EGA     A+   TP   N  +E W+  D LLLGW
Sbjct: 61  LTGETPCPSHFVLSA-SSSNTTVTEEGADATIGASSSITPRIVNSLFEQWVTTDLLLLGW 120

Query: 121 LYNSMSLEVATQVMGFENAQDLWAAVQELFGVQSRAEEDYLRQVFQQSRKGNLKMADYLR 180
           LYNSM+ +VA Q+MGF N +DLW A Q+ FGVQSRAEED+LRQ+ Q +RKGN KM +YL 
Sbjct: 121 LYNSMTPDVAIQLMGFTNVEDLWDATQDFFGVQSRAEEDFLRQMLQTTRKGNTKMEEYLL 180

Query: 181 VMKNHADNLGQAGSPVTTRSLVSEVLLGLDEEYNPVVEMIQGR 221
           VMK + DNLGQ GSPV  R+L+S+VLLGLDE YN V+ +IQG+
Sbjct: 181 VMKTNVDNLGQVGSPVPRRALISQVLLGLDEVYNLVIVVIQGK 221

BLAST of Lag0008300 vs. ExPASy TrEMBL
Match: A0A5D3BCH9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1970G00140 PE=4 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 1.8e-52
Identity = 116/204 (56.86%), Postives = 145/204 (71.08%), Query Frame = 0

Query: 1   MANANSTGFPAASTGTTNFSSPPLNQLLNQITSIKLDRGNFLLWKNLALPILRSYKLEGY 60
           MANA  T  P  S  +  FS+PPLNQ+LNQ+ ++KLDR N+LLWK LALPIL+ YKLEG+
Sbjct: 1   MANAQPTAAP-PSLSSAGFSNPPLNQILNQLATVKLDRKNYLLWKTLALPILKGYKLEGH 60

Query: 61  LSGLKPYPPKFIQAATSSSPPSSTGEGAIDEATATRQTTP---NPDYESWIAIDQLLLGW 120
           L+G  P P  F+ +A SSS  + T EGA     A+   TP   N  +E W+  D LLLGW
Sbjct: 61  LTGETPCPSHFVLSA-SSSNTTVTEEGADATIGASSSITPRIVNSLFEQWVTTDLLLLGW 120

Query: 121 LYNSMSLEVATQVMGFENAQDLWAAVQELFGVQSRAEEDYLRQVFQQSRKGNLKMADYLR 180
           LYNSM+ +VA Q+MGF N +DLW A Q+ FGVQSRAEED+LRQ+ Q +RKGN KM +YL 
Sbjct: 121 LYNSMTPDVAIQLMGFTNVEDLWDATQDFFGVQSRAEEDFLRQMLQTTRKGNTKMEEYLL 180

Query: 181 VMKNHADNLGQAGSPVTTRSLVSE 202
           VMK + DNLGQ GSPV  R+L+S+
Sbjct: 181 VMKTNVDNLGQVGSPVPRRALISQ 202

BLAST of Lag0008300 vs. ExPASy TrEMBL
Match: A0A5A7VPY0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold418G001000 PE=4 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 6.3e-50
Identity = 108/199 (54.27%), Postives = 138/199 (69.35%), Query Frame = 0

Query: 5   NSTGFPAASTGTTNFSSPPLNQLLNQITSIKLDRGNFLLWKNLALPILRSYKLEGYLSGL 64
           N+      +T TT+F++P LNQ+LNQ+T+IKLDRGN+LLWK LALPIL+SYKL  +L G 
Sbjct: 3   NAAPISVTATPTTSFTNPLLNQILNQLTTIKLDRGNYLLWKTLALPILKSYKLNSHLFGE 62

Query: 65  KPYPPKFIQAATSSSPPSSTGEGAIDEATATRQT---TPNPDYESWIAIDQLLLGWLYNS 124
            P  PK I   T  +       G   + T++  T   T NP YE WI  D LLLGWLYNS
Sbjct: 63  SPCLPKIIMLTTQPNESIVENAGEPSQETSSSSTAVVTVNPKYERWITTDLLLLGWLYNS 122

Query: 125 MSLEVATQVMGFENAQDLWAAVQELFGVQSRAEEDYLRQVFQQSRKGNLKMADYLRVMKN 184
           M+ EV  Q+MGF NA+DLW A Q+LFG+QSRA+ED+L Q FQ ++KGNL M +YLR MKN
Sbjct: 123 MTPEVTIQLMGFTNAKDLWEATQDLFGIQSRAKEDFLHQTFQTTKKGNLNMEEYLRTMKN 182

Query: 185 HADNLGQAGSPVTTRSLVS 201
           + +NLGQA S V + ++VS
Sbjct: 183 NVNNLGQADSLVPSGAIVS 201

BLAST of Lag0008300 vs. ExPASy TrEMBL
Match: A0A6J1D5J0 (uncharacterized protein LOC111017501 OS=Momordica charantia OX=3673 GN=LOC111017501 PE=4 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 4.1e-49
Identity = 115/187 (61.50%), Postives = 136/187 (72.73%), Query Frame = 0

Query: 71  FIQAATSSSPPSSTGEGAIDEATATRQTTPNPDYESWIAIDQLLLGWLYNSMSLEVATQV 130
           F+Q +  +   S T   A   ++   +   NP YESW+  DQLLLGWLYNSM+ EVATQV
Sbjct: 2   FVQQSIGNMETSQTNISAPSSSSIATEAAINPLYESWVTTDQLLLGWLYNSMTPEVATQV 61

Query: 131 MGFENAQDLWAAVQELFGVQSRAEEDYLRQVFQQSRKGNLKMADYLRVMKNHADNLGQAG 190
           MG+ENA DLWAA+QELFGVQS+AEEDYLRQVFQQ+RKG+LKM D+LRVMK+HADNLGQAG
Sbjct: 62  MGYENACDLWAAIQELFGVQSQAEEDYLRQVFQQTRKGSLKMTDFLRVMKSHADNLGQAG 121

Query: 191 SPVTTRSLVSEVLLGLDEEYNPVVEMIQGRIATS-VNMAS---SKDTGTQRNQSSSTNGR 250
           SPV TRSL+S+VLLGLDEEYNPVV  IQG+   S   M +   S   G QR   +S    
Sbjct: 122 SPVPTRSLISQVLLGLDEEYNPVVATIQGKRGISWPEMQAEFRSVSGGNQRQNQNSQPPF 181

Query: 251 SNNFGRG 254
           +NN G G
Sbjct: 182 NNNRGGG 188

BLAST of Lag0008300 vs. TAIR 10
Match: AT5G48050.1 (CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34070.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 50.4 bits (119), Expect = 2.5e-06
Identity = 32/123 (26.02%), Postives = 63/123 (51.22%), Query Frame = 0

Query: 98  TTPNPDYES-WIAIDQLLLGWLYNSMSLEVATQVMGFE-NAQDLWAAVQELFGVQSRAEE 157
           +TP P  E  W   D L+  W+Y +++  +   ++     A+DLW +++ LF     A  
Sbjct: 57  STPTPMTEKRWKERDGLVKMWIYGTITDSLLDTIIKVGCTARDLWLSLENLFRDNKEARA 116

Query: 158 DYLRQVFQQSRKGNLKMADYLRVMKNHADNLGQAGSPVTTRSLVSEVLLGLDEEYNPVVE 217
                  + +   +L + +Y + +K+ +D L    SP++ R LV  +L GL E+Y+ ++ 
Sbjct: 117 LQFENELRTTTIDDLSVHEYCQKLKSLSDLLTNVDSPISDRVLVMHLLNGLTEKYDYILN 176

Query: 218 MIQ 219
           +I+
Sbjct: 177 VIK 179

BLAST of Lag0008300 vs. TAIR 10
Match: AT1G34070.1 (CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G48050.1); Has 648 Blast hits to 647 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 16; Fungi - 25; Plants - 607; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 48.9 bits (115), Expect = 7.2e-06
Identity = 27/85 (31.76%), Postives = 47/85 (55.29%), Query Frame = 0

Query: 136 AQDLWAAVQELFGVQSRAEEDYLRQVFQQSRKGNLKMADYLRVMKNHADNLGQAGSPVTT 195
           ++D+W  ++  F     A    L    +    G++++ADY R MK  AD+L     PVT 
Sbjct: 95  SRDIWLRIKNQFRNNKDARALRLDSELRTKDIGDMRVADYYRKMKKLADSLRNVDVPVTD 154

Query: 196 RSLVSEVLLGLDEEYNPVVEMIQGR 221
           R+LV  VL GL+ +++ ++ +I+ R
Sbjct: 155 RNLVMYVLNGLNPKFDNIINVIKHR 179

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022151683.13.3e-6151.41uncharacterized protein LOC111019598 [Momordica charantia][more]
KAA0026100.11.8e-5957.85uncharacterized protein E6C27_scaffold19G00360 [Cucumis melo var. makuwa][more]
XP_038902487.18.7e-5452.46uncharacterized protein LOC120089143 [Benincasa hispida][more]
TYJ96311.13.7e-5256.86uncharacterized protein E5676_scaffold1970G00140 [Cucumis melo var. makuwa][more]
KAA0067279.11.3e-4954.27uncharacterized protein E6C27_scaffold418G001000 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DCW41.6e-6151.41uncharacterized protein LOC111019598 OS=Momordica charantia OX=3673 GN=LOC111019... [more]
A0A5A7SIT78.8e-6057.85Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3BCH91.8e-5256.86Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7VPY06.3e-5054.27Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A6J1D5J04.1e-4961.50uncharacterized protein LOC111017501 OS=Momordica charantia OX=3673 GN=LOC111017... [more]
Match NameE-valueIdentityDescription
AT5G48050.12.5e-0626.02CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BE... [more]
AT1G34070.17.2e-0631.76CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BE... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 107..219
e-value: 2.5E-9
score: 37.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 227..262
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 227..254
NoneNo IPR availablePANTHERPTHR34222FAMILY NOT NAMEDcoord: 38..259
NoneNo IPR availablePANTHERPTHR34222:SF48SUBFAMILY NOT NAMEDcoord: 38..259

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0008300.1Lag0008300.1mRNA