Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGTGGTATCTGCAAAATGAAAGTGGAGAGTGTTGACCATGCATTATGTGGTTGCAAAAGGTCCAAGCAAATATGTGATGTGTTGTTTCGACGAGTGGATAGTCAAATACCCATTCAAAATAATTTCGCTGATCGAATTGTATGGCTCACAAACCATCTTCAAGATGAGGAATTTGAGAAAGTTTGCATTGTGCTTTGGGCCATTTGGAATGATAGAAATGACTATACTCATAATCAGGAGATTATGTCGTGGCAAAGGCACTGTGAGTGGGTCATTGAATATTGGGAAGATATGAGGGGTATCGTGAAAGCCAATTCTGAGCCTATTGCGCAGTGTCGTTGGTGTCCTACTGTGCAAGCGGGCGAGGTTGCTCTTTATACGGATGGGGTAGTAAACCCGTATGTGAAAGGAGTGGGATATGGAGCTGACAATCAATTACGTGGGGCATTGGAACTTTTTGATCCCATCTCGCATGCTCCACTTGCAACAGAAGTCAACGCCTTAATTCATGGCCTTCGTTTGCTTCACCGCGTGCACATTTCCAAGGCTATGGTGTGTTCGGATTCTGTTAATGCAATAAAGATGATCACAGGAGCCGTCCAAATTACATCAGATGTGCATCATTGGATTCTACAAATTCGTAGTCTAGTTGCAGCTTTCGATAATTTATCGTTCAATTATGTGCCAAGGTAA
mRNA sequence
ATGTGTGGTATCTGCAAAATGAAAGTGGAGAGTGTTGACCATGCATTATGTGGTTGCAAAAGGTCCAAGCAAATATGTGATGTGTTGTTTCGACGAGTGGATAGTCAAATACCCATTCAAAATAATTTCGCTGATCGAATTGTATGGCTCACAAACCATCTTCAAGATGAGGAATTTGAGAAAGTTTGCATTGTGCTTTGGGCCATTTGGAATGATAGAAATGACTATACTCATAATCAGGAGATTATGTCGTGGCAAAGGCACTGTGAGTGGGTCATTGAATATTGGGAAGATATGAGGGGTATCGTGAAAGCCAATTCTGAGCCTATTGCGCAGTGTCGTTGGTGTCCTACTGTGCAAGCGGGCGAGGTTGCTCTTTATACGGATGGGGTAGTAAACCCGTATGTGAAAGGAGTGGGATATGGAGCTGACAATCAATTACGTGGGGCATTGGAACTTTTTGATCCCATCTCGCATGCTCCACTTGCAACAGAAGTCAACGCCTTAATTCATGGCCTTCGTTTGCTTCACCGCGTGCACATTTCCAAGGCTATGGTGTGTTCGGATTCTGTTAATGCAATAAAGATGATCACAGGAGCCGTCCAAATTACATCAGATGTGCATCATTGGATTCTACAAATTCGTAGTCTAGTTGCAGCTTTCGATAATTTATCGTTCAATTATGTGCCAAGGTAA
Coding sequence (CDS)
ATGTGTGGTATCTGCAAAATGAAAGTGGAGAGTGTTGACCATGCATTATGTGGTTGCAAAAGGTCCAAGCAAATATGTGATGTGTTGTTTCGACGAGTGGATAGTCAAATACCCATTCAAAATAATTTCGCTGATCGAATTGTATGGCTCACAAACCATCTTCAAGATGAGGAATTTGAGAAAGTTTGCATTGTGCTTTGGGCCATTTGGAATGATAGAAATGACTATACTCATAATCAGGAGATTATGTCGTGGCAAAGGCACTGTGAGTGGGTCATTGAATATTGGGAAGATATGAGGGGTATCGTGAAAGCCAATTCTGAGCCTATTGCGCAGTGTCGTTGGTGTCCTACTGTGCAAGCGGGCGAGGTTGCTCTTTATACGGATGGGGTAGTAAACCCGTATGTGAAAGGAGTGGGATATGGAGCTGACAATCAATTACGTGGGGCATTGGAACTTTTTGATCCCATCTCGCATGCTCCACTTGCAACAGAAGTCAACGCCTTAATTCATGGCCTTCGTTTGCTTCACCGCGTGCACATTTCCAAGGCTATGGTGTGTTCGGATTCTGTTAATGCAATAAAGATGATCACAGGAGCCGTCCAAATTACATCAGATGTGCATCATTGGATTCTACAAATTCGTAGTCTAGTTGCAGCTTTCGATAATTTATCGTTCAATTATGTGCCAAGGTAA
Protein sequence
MCGICKMKVESVDHALCGCKRSKQICDVLFRRVDSQIPIQNNFADRIVWLTNHLQDEEFEKVCIVLWAIWNDRNDYTHNQEIMSWQRHCEWVIEYWEDMRGIVKANSEPIAQCRWCPTVQAGEVALYTDGVVNPYVKGVGYGADNQLRGALELFDPISHAPLATEVNALIHGLRLLHRVHISKAMVCSDSVNAIKMITGAVQITSDVHHWILQIRSLVAAFDNLSFNYVPR
Homology
BLAST of Lag0007903 vs. NCBI nr
Match:
XP_022158377.1 (uncharacterized protein LOC111024874 [Momordica charantia])
HSP 1 Score: 101.7 bits (252), Expect = 8.9e-18
Identity = 64/241 (26.56%), Postives = 110/241 (45.64%), Query Frame = 0
Query: 2 CGICKMKVESVDHALCGCKRSKQICDVLFRRVDSQIPIQNNFADRIVW--LTNHLQDEEF 61
C IC + ES+ HA CKR++QI LF + + + ++N + +W LT L+ ++
Sbjct: 1173 CTICGDRRESIIHAFFHCKRARQIWRTLFPFL-TCLSAEDNISFLELWSSLTEQLEPKDL 1232
Query: 62 EKVCIVLWAIWNDRNDYTHNQEIMSWQRHCEWVIEYWEDMRGIVKANSEPIAQCRWCPTV 121
I W IWNDRN H +++ + CEW+ + + +N P Q P V
Sbjct: 1233 NLAAITGWGIWNDRNSLIHGKQVSPVEFKCEWLTPFLDSHSQAQMSNYSPRTQSNHRPVV 1292
Query: 122 Q------AGEVALYTDGVVNPYVKGVG---YGADNQLRGALELFDPISHAPLATEVNALI 181
Q + + L TD G + L A + P +PL E+ ++
Sbjct: 1293 QYWRPSSSVSLKLNTDAACRGASTSFGCIIRDSSCSLVAATSIRVPFPLSPLLAEIRCIL 1352
Query: 182 HGLRLLHRVHISKAMVCSDSVNAIKMITGAVQITSDVHHWILQIRSLVAAFDNLSFNYVP 232
GL+ + + V SDS+ AI++I + D +W+++I++L F +SF++
Sbjct: 1353 EGLKFAAASNFTHLEVESDSLLAIQLIRNEIHTRGDEQNWVMEIQALTCCFAFISFSHSS 1412
BLAST of Lag0007903 vs. NCBI nr
Match:
TXG71533.1 (hypothetical protein EZV62_000112 [Acer yangbiense])
HSP 1 Score: 80.9 bits (198), Expect = 1.6e-11
Identity = 62/235 (26.38%), Postives = 102/235 (43.40%), Query Frame = 0
Query: 2 CGICKMKVESVDHALCGCKRSKQI-CDVLFRRVDSQIPIQNNFADRIVWLTNHLQDEEFE 61
C IC K E+ HAL C K++ C F D+ + F + ++ ++ L +EFE
Sbjct: 7 CPICVKKPETSLHALWRCSSLKELRCVCNFAAGDASLD-NVPFIEFVISCSSQLVLKEFE 66
Query: 62 KVCIVLWAIWNDRNDYTHNQEIMSWQRHCEWVIEYWEDMRGIVK----ANSEPIAQCRWC 121
+CI+ W +W+ RN HN I+ +W + D RG + E + RW
Sbjct: 67 LLCIIWWRVWHRRNKAVHNNNILPAAEIYDWGCNFITDYRGANERQYVQKVEVLRPPRWL 126
Query: 122 PTVQAGEVALYTDGVVNPYVKGVGYGADNQLRGALELFDPISHAPLATEVNALIHGLRLL 181
G V + TD +N +K G+G + P E A++ GLR
Sbjct: 127 -APPFGSVKINTDAALNFQLKVAGFG----------------NKPPIAEALAILEGLRFA 186
Query: 182 HRVHISKAMVCSDSVNAIKMITGAVQITSDVHHWILQIRSLVAAFDNLSFNYVPR 232
+ SK + SD++ ++ I +S+V + I ++ F +SF +VPR
Sbjct: 187 FSRNFSKVCLESDALCVVQAINNKSPPSSEVGVVLNDIFLVLDRFSEVSFAFVPR 223
BLAST of Lag0007903 vs. NCBI nr
Match:
XP_022145060.1 (uncharacterized protein LOC111014578 [Momordica charantia])
HSP 1 Score: 80.9 bits (198), Expect = 1.6e-11
Identity = 50/185 (27.03%), Postives = 87/185 (47.03%), Query Frame = 0
Query: 2 CGICKMKVESVDHALCGCKRSKQICDVLFRRVDSQIPIQNNFADRIVWLTNHLQDEEFEK 61
C +C ++E+ DHAL CKR+K++ ++L + Q N+ D +++L L +F+
Sbjct: 28 CLVCGKQIETTDHALFKCKRAKEVWNILLPQAFPQCDFNNSVQDGLLYLVESLSTPDFDL 87
Query: 62 VCIVLWAIWNDRNDYTHNQEIMSWQRHCEWVIEYWEDMR-------GIVKANSEPIAQCR 121
V + +WAIWNDRN ++I + +W++ Y D + G + + + R
Sbjct: 88 VGVGVWAIWNDRNAIRMQRQIPDAKIRSDWILTYVRDFQVRDVPSLGDFRIQEDASSNDR 147
Query: 122 -----WCPTVQAGEVALYTDGVV--NPYVKGVGYGADNQLRGALELFDPISHAPLATEVN 173
W P AG + + D + + G+G N+ +G ++ SH PL E
Sbjct: 148 TIENYWSPP-PAGWIKINVDAACKKHQFRTGIGIVCRNE-KG--QILAAASHDPLMAESL 207
BLAST of Lag0007903 vs. NCBI nr
Match:
XP_024956542.1 (uncharacterized protein LOC112498908 [Citrus sinensis])
HSP 1 Score: 80.1 bits (196), Expect = 2.8e-11
Identity = 59/241 (24.48%), Postives = 107/241 (44.40%), Query Frame = 0
Query: 2 CGICKMKVESVDHALCGCKRSKQICDVLFRRVDSQIPIQNNFADRIVWLTNHLQDEEFEK 61
C +CKM +E+V HAL CK +K++ + +D Q + + + + + +
Sbjct: 850 CQLCKMGIENVFHALVDCKAAKKVWRLSLFYIDIQAAPGQDILSLLHGVKRMRSNADVDL 909
Query: 62 VCIVLWAIWNDRNDYT---HNQEIMSWQRHCEWVIEYWEDMR---GIVKANSEPIAQCRW 121
++LWA WN RN + + S E V+E ++ ++ + + +AQ W
Sbjct: 910 FAVMLWAKWNARNQWLFKGKRENPQSVVAKAEAVMEAYKRVQPSADVSHGKQQKVAQLGW 969
Query: 122 CPTVQAGEVALYTDGVVNPYVKGVGYGA----DNQLRGALELFDPISHAPLA-TEVNALI 181
P Q G V + TD N G GA +N A + H +A E A+
Sbjct: 970 NPP-QEGFVKINTDAATNSEKNLAGLGAVIRDENGQVTATAIKVSKFHGSVAYAEAEAME 1029
Query: 182 HGLRLLHRVHISKAMVCSDSVNAIKMITGAVQITSDVHHWILQIRSLVAAFDNLSFNYVP 232
GL++ H+ ++ SDS + ++ S+++ +L+I+ L +FD++S Y
Sbjct: 1030 WGLQVAKDAHVKDVIMESDSQEVVSLVNNRQGSRSEIYWVVLEIQKLKESFDHVSCVYTH 1089
BLAST of Lag0007903 vs. NCBI nr
Match:
XP_024178556.2 (uncharacterized protein LOC112184522 [Rosa chinensis])
HSP 1 Score: 80.1 bits (196), Expect = 2.8e-11
Identity = 64/249 (25.70%), Postives = 106/249 (42.57%), Query Frame = 0
Query: 2 CGICKMKVESVDHALCGCKRSKQICDVLFRRVDSQIPIQN-NFADRIVWLTNHLQDEEFE 61
C +C VE+V+H C C +++I IP+ + ++ D + N L FE
Sbjct: 869 CVVCSNGVETVEHLFCQCSLAREIVGA----PPFIIPVSSLSWKDWFLERVNSLSSGCFE 928
Query: 62 KVCIVLWAIWNDRNDYTHNQEIMSWQRHCE------------WVIEYWEDMRGIVKANSE 121
K+ ++LW IW +RND W R C W EY + + V +
Sbjct: 929 KLLVLLWNIWQNRND-------KLW-RDCSKTGPSIVASSMAWFEEYSQVNQATVSPDRR 988
Query: 122 -PIAQCRWCPTVQAGEVALYTDGVVNPYVKGVGYGA-----DNQLRGALELFDPISHAPL 181
P Q RW P G + L DG ++ G G A +PL
Sbjct: 989 GPTGQTRWFPPA-TGTLKLNVDGAFLSSIQYGGTGGVLRNDQGDFIAAFSYRAEFVLSPL 1048
Query: 182 ATEVNALIHGLRLLHRVHISKAMVCSDSVNAIKMITGAVQITSDVHHWILQIRSLVAAFD 232
E+ AL +GL LH ++++K +V +D + A++ I + + S++ I I+ LV
Sbjct: 1049 HAELLALKYGLDFLHAMNVTKVVVETDCLVAVQAINSSTEDLSELGALIHDIKGLVGVVG 1104
BLAST of Lag0007903 vs. ExPASy TrEMBL
Match:
A0A6J1DX30 (uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024874 PE=4 SV=1)
HSP 1 Score: 101.7 bits (252), Expect = 4.3e-18
Identity = 64/241 (26.56%), Postives = 110/241 (45.64%), Query Frame = 0
Query: 2 CGICKMKVESVDHALCGCKRSKQICDVLFRRVDSQIPIQNNFADRIVW--LTNHLQDEEF 61
C IC + ES+ HA CKR++QI LF + + + ++N + +W LT L+ ++
Sbjct: 1173 CTICGDRRESIIHAFFHCKRARQIWRTLFPFL-TCLSAEDNISFLELWSSLTEQLEPKDL 1232
Query: 62 EKVCIVLWAIWNDRNDYTHNQEIMSWQRHCEWVIEYWEDMRGIVKANSEPIAQCRWCPTV 121
I W IWNDRN H +++ + CEW+ + + +N P Q P V
Sbjct: 1233 NLAAITGWGIWNDRNSLIHGKQVSPVEFKCEWLTPFLDSHSQAQMSNYSPRTQSNHRPVV 1292
Query: 122 Q------AGEVALYTDGVVNPYVKGVG---YGADNQLRGALELFDPISHAPLATEVNALI 181
Q + + L TD G + L A + P +PL E+ ++
Sbjct: 1293 QYWRPSSSVSLKLNTDAACRGASTSFGCIIRDSSCSLVAATSIRVPFPLSPLLAEIRCIL 1352
Query: 182 HGLRLLHRVHISKAMVCSDSVNAIKMITGAVQITSDVHHWILQIRSLVAAFDNLSFNYVP 232
GL+ + + V SDS+ AI++I + D +W+++I++L F +SF++
Sbjct: 1353 EGLKFAAASNFTHLEVESDSLLAIQLIRNEIHTRGDEQNWVMEIQALTCCFAFISFSHSS 1412
BLAST of Lag0007903 vs. ExPASy TrEMBL
Match:
A0A5C7IQ65 (RNase H domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_000112 PE=4 SV=1)
HSP 1 Score: 80.9 bits (198), Expect = 7.8e-12
Identity = 62/235 (26.38%), Postives = 102/235 (43.40%), Query Frame = 0
Query: 2 CGICKMKVESVDHALCGCKRSKQI-CDVLFRRVDSQIPIQNNFADRIVWLTNHLQDEEFE 61
C IC K E+ HAL C K++ C F D+ + F + ++ ++ L +EFE
Sbjct: 7 CPICVKKPETSLHALWRCSSLKELRCVCNFAAGDASLD-NVPFIEFVISCSSQLVLKEFE 66
Query: 62 KVCIVLWAIWNDRNDYTHNQEIMSWQRHCEWVIEYWEDMRGIVK----ANSEPIAQCRWC 121
+CI+ W +W+ RN HN I+ +W + D RG + E + RW
Sbjct: 67 LLCIIWWRVWHRRNKAVHNNNILPAAEIYDWGCNFITDYRGANERQYVQKVEVLRPPRWL 126
Query: 122 PTVQAGEVALYTDGVVNPYVKGVGYGADNQLRGALELFDPISHAPLATEVNALIHGLRLL 181
G V + TD +N +K G+G + P E A++ GLR
Sbjct: 127 -APPFGSVKINTDAALNFQLKVAGFG----------------NKPPIAEALAILEGLRFA 186
Query: 182 HRVHISKAMVCSDSVNAIKMITGAVQITSDVHHWILQIRSLVAAFDNLSFNYVPR 232
+ SK + SD++ ++ I +S+V + I ++ F +SF +VPR
Sbjct: 187 FSRNFSKVCLESDALCVVQAINNKSPPSSEVGVVLNDIFLVLDRFSEVSFAFVPR 223
BLAST of Lag0007903 vs. ExPASy TrEMBL
Match:
A0A6J1CTE3 (uncharacterized protein LOC111014578 OS=Momordica charantia OX=3673 GN=LOC111014578 PE=4 SV=1)
HSP 1 Score: 80.9 bits (198), Expect = 7.8e-12
Identity = 50/185 (27.03%), Postives = 87/185 (47.03%), Query Frame = 0
Query: 2 CGICKMKVESVDHALCGCKRSKQICDVLFRRVDSQIPIQNNFADRIVWLTNHLQDEEFEK 61
C +C ++E+ DHAL CKR+K++ ++L + Q N+ D +++L L +F+
Sbjct: 28 CLVCGKQIETTDHALFKCKRAKEVWNILLPQAFPQCDFNNSVQDGLLYLVESLSTPDFDL 87
Query: 62 VCIVLWAIWNDRNDYTHNQEIMSWQRHCEWVIEYWEDMR-------GIVKANSEPIAQCR 121
V + +WAIWNDRN ++I + +W++ Y D + G + + + R
Sbjct: 88 VGVGVWAIWNDRNAIRMQRQIPDAKIRSDWILTYVRDFQVRDVPSLGDFRIQEDASSNDR 147
Query: 122 -----WCPTVQAGEVALYTDGVV--NPYVKGVGYGADNQLRGALELFDPISHAPLATEVN 173
W P AG + + D + + G+G N+ +G ++ SH PL E
Sbjct: 148 TIENYWSPP-PAGWIKINVDAACKKHQFRTGIGIVCRNE-KG--QILAAASHDPLMAESL 207
BLAST of Lag0007903 vs. ExPASy TrEMBL
Match:
A0A803PJK4 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)
HSP 1 Score: 78.6 bits (192), Expect = 3.9e-11
Identity = 60/247 (24.29%), Postives = 105/247 (42.51%), Query Frame = 0
Query: 1 MCGICKMKVESVDHALCGCKRSKQICDVLFRRVDSQIPIQNNFADRIVWLTNHLQDEEFE 60
+C +C+ ES+ HAL CKR+K++ +D I + F D + +E E
Sbjct: 1555 ICSLCRGNNESIVHALFLCKRAKKVWRGSSFSIDRIIHESSTFKDLFFKASETWPQQELE 1614
Query: 61 KVCIVLWAIWNDRNDYTHNQEIMSWQRHCEWVIEYWED-----------MRGIVKANSEP 120
+ +LW+IW +RN H + + + Y + +R V N+EP
Sbjct: 1615 QFACILWSIWTERNKEYHGTKPKPHEMLLVSALSYLGEYQTSRQATPTHLRNEVHRNNEP 1674
Query: 121 IAQCRWCPTVQAGEVALYTDGVVNPYVKGVGYGA-----DNQLRGALELFDPISHAPLAT 180
+W +G + L TD V+ + G+GA D Q+ A+ P P
Sbjct: 1675 TVAPKWL-NPPSGRLKLNTDAAVDNVNRISGFGAILRDSDGQVVAAMSKPHPGCFKPEVM 1734
Query: 181 EVNALIHGLRLLHRVHISKAMVCSDSVNAIKMITGAVQITSDVHHWILQIRSLVAAFDNL 232
E AL + L+ L +++ + +DS+ +K + SD H + I L++ F +
Sbjct: 1735 EALALRYSLQWLQSMNLPIHYIETDSLLVVKGLQARSLNVSDFHSVLNDITILMSNFPGV 1794
BLAST of Lag0007903 vs. ExPASy TrEMBL
Match:
A0A803P5M6 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)
HSP 1 Score: 72.4 bits (176), Expect = 2.8e-09
Identity = 65/255 (25.49%), Postives = 101/255 (39.61%), Query Frame = 0
Query: 2 CGICKMKVESVDHALCGCKRSKQICDVLFRRVDSQIPIQNNFADRIVWLTNHLQDEEFEK 61
C +C ES+ HAL CK +K I + R+D D + L+ Q +FE
Sbjct: 1031 CSLCTSNWESIGHALFSCKHAKDIWKLSRFRIDFSQAHNMFNGDYLYHLSTIYQQHDFET 1090
Query: 62 VCIVLWAIWNDRNDYTHNQEIMSWQRHCEWVIEYWEDMRGIVKANSEPIAQC-------- 121
+ VLW IW DRN H + ++ +++ED K + P+A
Sbjct: 1091 LLCVLWGIWTDRNKVVHGGQPRHPTAIVQYASKFYEDFNK-AKLQNRPVAATSSHHSSPS 1150
Query: 122 ---------RWCPTVQAGEVALYTDGVVNPYVKGVGYGA---DNQ--LRGALELFDPISH 181
RW P V+ G L D N K +G GA D Q + AL S
Sbjct: 1151 TSATDQHVQRWRPPVRNG-YKLNVDAATNIEQKKLGIGAILRDQQGTVLAALSKAVQGSF 1210
Query: 182 APLATEVNALIHGLRLLHRVHISKAMVCSDS---VNAIKMITGAVQITSDVHHWILQIRS 232
E AL H + + + + +D+ NA+ + + SD+ I+ IR
Sbjct: 1211 KSDEMEAKALFHAVNWVSQSQFPLTHIETDASRVSNALNRLNSDLSCFSDL---IMDIRC 1270
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1DX30 | 4.3e-18 | 26.56 | uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024... | [more] |
A0A5C7IQ65 | 7.8e-12 | 26.38 | RNase H domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_000112 ... | [more] |
A0A6J1CTE3 | 7.8e-12 | 27.03 | uncharacterized protein LOC111014578 OS=Momordica charantia OX=3673 GN=LOC111014... | [more] |
A0A803PJK4 | 3.9e-11 | 24.29 | Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1 | [more] |
A0A803P5M6 | 2.8e-09 | 25.49 | Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |