Lag0006436 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0006436
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	zinc finger protein 830-like isoform X1
Location	chr6: 42472114 .. 42473264 (+)
RNA-Seq Expression	Lag0006436
Synteny	Lag0006436

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGTTCAAGTTCCGTGCCGGCGATCACCGACCGCCACCGCCGCCGCAGTATGCGTCTCCTCGGCCGCCGGCTGTTTACTGTTTCGCTAAGCAAAGGTTTTCAGGTTTGTGTTGTTTGTATGTTTTCGCATTGTGATTTTTGTGATCCTTTTATGTGTTCAACTCTGTTTTGAATATTTCTTCGGTTTTGTTTGATGATTTGAGTAGTGAATAGGTTTTTCTGGGAATTGATTAACTGTTCTTTGATGTGAATGCATTGAATCTCTGGCCTGTTTTTGGCTTTTTCGATGAGAAGTTTAATTGCAATTCGAAATTTTGGAAGGAAGTTCGAATTTCCTTTTCTGGGTAAAGCGACGCGAAGAATGGGACTACTACTAGGTTTTAGTTTTACCGATCAATTTTGAGAAATTACTTTTGTTTTTCTAGTTTAGTTAGGATTTTTTACTCTTTTCGGTTACGGAAGAAGAAGTCGCGAGGGTTTAGTTCTGCACGTTTCTACTTTCTCCGCGTTTTTCTCGGTAACCAAACAGATGAGAATATACCAAAAGGTTTTCGGTTCTCTCTTATCGAATGGTTGCACTTAATAAACGCATTTGAGAGAGGAATCTCAGATTTCTCTGCGCTCTCATCACTTTTTCTTGATTTTCGATTTTCGATTTCTTGATGGATTCAACAGATGCCTGTCTCAGGCGAAACACGAACATCGTAACTATTAGAAAGCCGTTCGATACCAACGAGGCGATTGAGTATGAGATGGAGTTGATGCGATTGAGAGAAGAGAAACTGCTGGCGGAGATTGAACGGCAGCGATTTCTGAAAGAGGAAGCGAGGCGAGAGCTGATGTTGTTCGAACGGGAGATGGCGATTCGAGGACTTCGGCATTCGGCGGGCTATTCTTTCCGTGAGCAGCACCGATGGGGAACGTCGTTCGGCGCAGCGCCGTCGCCGTCGCCGTCTCCGGTGGCGGTAGTGCAGTCGTTCAATGAATGGCGGAAAATCGAGAATTTGAAATTTTCCGACCGCCTTGGGTTTGATGCAGTGGCGTTGCCGCCTCGGGCTCAGCCATTTATGGCGGATGACAAAAAGGAGCGTCAAGTACTGCAGGCTGATAAAAGAGAATTCATTGTACTGGTCTGGCTCTATCCCTAA

mRNA sequence

ATGGAGTTCAAGTTCCGTGCCGGCGATCACCGACCGCCACCGCCGCCGCAGTATGCGTCTCCTCGGCCGCCGGCTGTTTACTGTTTCGCTAAGCAAAGGTTTTCAGATGCCTGTCTCAGGCGAAACACGAACATCGTAACTATTAGAAAGCCGTTCGATACCAACGAGGCGATTGAGTATGAGATGGAGTTGATGCGATTGAGAGAAGAGAAACTGCTGGCGGAGATTGAACGGCAGCGATTTCTGAAAGAGGAAGCGAGGCGAGAGCTGATGTTGTTCGAACGGGAGATGGCGATTCGAGGACTTCGGCATTCGGCGGGCTATTCTTTCCGTGAGCAGCACCGATGGGGAACGTCGTTCGGCGCAGCGCCGTCGCCGTCGCCGTCTCCGGTGGCGGTAGTGCAGTCGTTCAATGAATGGCGGAAAATCGAGAATTTGAAATTTTCCGACCGCCTTGGGTTTGATGCAGTGGCGTTGCCGCCTCGGGCTCAGCCATTTATGGCGGATGACAAAAAGGAGCGTCAAGTACTGCAGGCTGATAAAAGAGAATTCATTGTACTGGTCTGGCTCTATCCCTAA

Coding sequence (CDS)

ATGGAGTTCAAGTTCCGTGCCGGCGATCACCGACCGCCACCGCCGCCGCAGTATGCGTCTCCTCGGCCGCCGGCTGTTTACTGTTTCGCTAAGCAAAGGTTTTCAGATGCCTGTCTCAGGCGAAACACGAACATCGTAACTATTAGAAAGCCGTTCGATACCAACGAGGCGATTGAGTATGAGATGGAGTTGATGCGATTGAGAGAAGAGAAACTGCTGGCGGAGATTGAACGGCAGCGATTTCTGAAAGAGGAAGCGAGGCGAGAGCTGATGTTGTTCGAACGGGAGATGGCGATTCGAGGACTTCGGCATTCGGCGGGCTATTCTTTCCGTGAGCAGCACCGATGGGGAACGTCGTTCGGCGCAGCGCCGTCGCCGTCGCCGTCTCCGGTGGCGGTAGTGCAGTCGTTCAATGAATGGCGGAAAATCGAGAATTTGAAATTTTCCGACCGCCTTGGGTTTGATGCAGTGGCGTTGCCGCCTCGGGCTCAGCCATTTATGGCGGATGACAAAAAGGAGCGTCAAGTACTGCAGGCTGATAAAAGAGAATTCATTGTACTGGTCTGGCTCTATCCCTAA

Protein sequence

MEFKFRAGDHRPPPPPQYASPRPPAVYCFAKQRFSDACLRRNTNIVTIRKPFDTNEAIEYEMELMRLREEKLLAEIERQRFLKEEARRELMLFEREMAIRGLRHSAGYSFREQHRWGTSFGAAPSPSPSPVAVVQSFNEWRKIENLKFSDRLGFDAVALPPRAQPFMADDKKERQVLQADKREFIVLVWLYP

Homology

[Close]

BLAST of Lag0006436 vs. NCBI nr
Match: KAG6586051.1 (Signal recognition particle receptor subunit alpha-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 241.9 bits (616), Expect = 4.6e-60
Identity = 132/193 (68.39%), Postives = 148/193 (76.68%), Query Frame = 0


Query: 1   MEFKFRAGDHRPPPPP---QYASP-RPPAVYCFAKQRFSDACLRRNTNIVTIRKPFDTNE 60
           MEF+FRAGDHRPPPP    QYASP  PPAV+C +KQ FSDACLR +TNIV  RKPFDT+E
Sbjct: 1   MEFRFRAGDHRPPPPTPALQYASPWPPPAVHCLSKQGFSDACLRGSTNIVADRKPFDTDE 60

Query: 61  AIEYEMELMRLREEKLLAEIERQRFLKEEARRELMLFEREMAIRGLRHSAGYSFREQHRW 120
           A+  EMELMRLR+EKLL EIERQ+FLKE+ARREL+LFEREMAIR      GY F   +RW
Sbjct: 61  AMHCEMELMRLRKEKLLVEIERQQFLKEDARRELVLFEREMAIR------GYIFHRHNRW 120

Query: 121 GTSFG--AAPSPSPSPVAVVQSFNEWRKIENLKFSDRLGFDAVALPPRAQPFMADDKKER 180
           G  F   AAP P PS   VVQS NEW K+E L+ SDRLGF AV LPPR QP MADDK ER
Sbjct: 121 GAPFSAPAAPLPLPSSATVVQSSNEWPKVEQLESSDRLGFGAVPLPPRVQPLMADDKTER 180

Query: 181 QVLQADKREFIVL 188
           Q+LQ D+RE I+L
Sbjct: 181 QLLQDDERELIIL 187

[Close]

BLAST of Lag0006436 vs. NCBI nr
Match: XP_022969583.1 (uncharacterized protein LOC111468562 [Cucurbita maxima])

HSP 1 Score: 237.7 bits (605), Expect = 8.6e-59
Identity = 128/192 (66.67%), Postives = 144/192 (75.00%), Query Frame = 0


Query: 1   MEFKFRAGDHRPPPPP---QYASPRPPAVYCFAKQRFSDACLRRNTNIVTIRKPFDTNEA 60
           MEF+FRAGDHRPPPP    QYASP PPAV+C +KQ FSDACLR +TNI+  RKPFDT+E 
Sbjct: 1   MEFRFRAGDHRPPPPTPALQYASPWPPAVHCLSKQGFSDACLRGSTNIIADRKPFDTDEV 60

Query: 61  IEYEMELMRLREEKLLAEIERQRFLKEEARRELMLFEREMAIRGLRHSAGYSFREQHRWG 120
           +  EMELMRLR+EKLL EIERQ+FLKE+ARREL+LFEREMAIR      GY F   +RWG
Sbjct: 61  MHCEMELMRLRKEKLLVEIERQQFLKEDARRELVLFEREMAIR------GYIFHRHNRWG 120

Query: 121 TSFG--AAPSPSPSPVAVVQSFNEWRKIENLKFSDRLGFDAVALPPRAQPFMADDKKERQ 180
             F   AAP   PS   VVQS NEW K+E L+ SDRLGF    LPPR QP MADDK ERQ
Sbjct: 121 APFSAPAAPLSLPSSATVVQSSNEWPKVEQLESSDRLGFGPGPLPPRVQPLMADDKTERQ 180

Query: 181 VLQADKREFIVL 188
           VLQ D+RE I+L
Sbjct: 181 VLQNDERELIIL 186

[Close]

BLAST of Lag0006436 vs. NCBI nr
Match: XP_023536654.1 (uncharacterized protein LOC111797967 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 235.7 bits (600), Expect = 3.3e-58
Identity = 130/193 (67.36%), Postives = 145/193 (75.13%), Query Frame = 0


Query: 1   MEFKFRAGDHRPPPPP---QYASP-RPPAVYCFAKQRFSDACLRRNTNIVTIRKPFDTNE 60
           MEF+FRAGDHRPPPP    QYASP  PPAVYC +KQ FSDACLR +TNIV  RKPFDT+E
Sbjct: 1   MEFRFRAGDHRPPPPTPALQYASPCPPPAVYCLSKQGFSDACLRGSTNIVADRKPFDTDE 60

Query: 61  AIEYEMELMRLREEKLLAEIERQRFLKEEARRELMLFEREMAIRGLRHSAGYSFREQHRW 120
           A+  EMELMRLR+EKLL EIERQ+FLKE+ARREL+LFEREMAIR      GY F   +RW
Sbjct: 61  AMHCEMELMRLRKEKLLVEIERQQFLKEDARRELVLFEREMAIR------GYIFHRHNRW 120

Query: 121 GTSFG--AAPSPSPSPVAVVQSFNEWRKIENLKFSDRLGFDAVALPPRAQPFMADDKKER 180
           G  F   AAP   PS   VVQS NEW K+E L+ SDRLGF AV  PPR +P M DDK ER
Sbjct: 121 GGPFSAPAAPLSLPSSATVVQSSNEWPKVEQLESSDRLGFGAVPSPPRVRPLMVDDKTER 180

Query: 181 QVLQADKREFIVL 188
           QVLQ D+RE I+L
Sbjct: 181 QVLQDDERELIIL 187

[Close]

BLAST of Lag0006436 vs. NCBI nr
Match: XP_038890954.1 (uncharacterized protein LOC120080381 isoform X1 [Benincasa hispida])

HSP 1 Score: 234.2 bits (596), Expect = 9.5e-58
Identity = 132/200 (66.00%), Postives = 148/200 (74.00%), Query Frame = 0


Query: 1   MEFKFRAGDHRPPPPP--QYASPRPPAVYCFAKQRFSDACLRRNTNIVTIRKPFDTNEAI 60
           MEFKFRAGDHRPPPPP  QY  P P AVYC + QRF + CLRR T+I+      D+N+ +
Sbjct: 1   MEFKFRAGDHRPPPPPPQQYVPPWPLAVYCLSNQRFPEPCLRRTTDIL------DSNKEM 60

Query: 61  EYEMELMRLREEKLLAEIERQRFLKEEARRELMLFEREMAIRGLRHSAGYSFREQHRWGT 120
            +EMELMRLREEKLLAEIERQRFLKEEARRELMLFEREMAIRG+   AG+  R+  RWG 
Sbjct: 61  LWEMELMRLREEKLLAEIERQRFLKEEARRELMLFEREMAIRGVAQLAGFPLRQPQRWGV 120

Query: 121 SF---GAAPSPS----PSPVAVVQSFNEWRKIENLKFSDRLGFDAVAL----PPRAQPFM 180
            F    AAPSPS    PSP  VVQSF+EWRK+E  K SDRLGF AVAL    PPR QP M
Sbjct: 121 PFSAAAAAPSPSSCPLPSPAVVVQSFHEWRKMEQAKSSDRLGFRAVALPPPPPPRIQPLM 180

Query: 181 ADDKKERQVLQADKREFIVL 188
            +DKKE +VL+A KRE IVL
Sbjct: 181 VEDKKELEVLEAVKRELIVL 194

[Close]

BLAST of Lag0006436 vs. NCBI nr
Match: XP_022937456.1 (uncharacterized protein LOC111443862 [Cucurbita moschata] >KAG7020828.1 hypothetical protein SDJN02_17516 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 232.3 bits (591), Expect = 3.6e-57
Identity = 130/193 (67.36%), Postives = 145/193 (75.13%), Query Frame = 0


Query: 1   MEFKFRAGDHRPPPPP---QYASP-RPPAVYCFAKQRFSDACLRRNTNIVTIRKPFDTNE 60
           MEF+FRAGDHRPPPP    QYASP  PPAV+C +KQ FSDACLR +TNIV  RKPFDT+E
Sbjct: 1   MEFRFRAGDHRPPPPTPALQYASPWPPPAVHCLSKQGFSDACLRGSTNIVADRKPFDTDE 60

Query: 61  AIEYEMELMRLREEKLLAEIERQRFLKEEARRELMLFEREMAIRGLRHSAGYSFREQHRW 120
           A+  EMEL  LR+EKLL EIERQ+FLKE+ARREL+LFEREMAIR      GY F   +RW
Sbjct: 61  AMHCEMEL--LRKEKLLVEIERQQFLKEDARRELVLFEREMAIR------GYIFHRHNRW 120

Query: 121 GTSFG--AAPSPSPSPVAVVQSFNEWRKIENLKFSDRLGFDAVALPPRAQPFMADDKKER 180
           G  F   AAP P PS   VVQS NEW K+E L+ SDRLG  AV LPPR QP MADDK ER
Sbjct: 121 GAPFSAPAAPLPLPSSATVVQSSNEWPKVEQLESSDRLGIGAVPLPPRVQPLMADDKTER 180

Query: 181 QVLQADKREFIVL 188
           QVLQ D+RE I+L
Sbjct: 181 QVLQDDERELIIL 185

The following BLAST results are available for this feature:

BLAST of Lag0006436 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6586051.1	4.6e-60	68.39	Signal recognition particle receptor subunit alpha-like protein, partial [Cucurb...	[more]
XP_022969583.1	8.6e-59	66.67	uncharacterized protein LOC111468562 [Cucurbita maxima]	[more]
XP_023536654.1	3.3e-58	67.36	uncharacterized protein LOC111797967 [Cucurbita pepo subsp. pepo]	[more]
XP_038890954.1	9.5e-58	66.00	uncharacterized protein LOC120080381 isoform X1 [Benincasa hispida]	[more]
XP_022937456.1	3.6e-57	67.36	uncharacterized protein LOC111443862 [Cucurbita moschata] >KAG7020828.1 hypothet...	[more]

BLAST of Lag0006436 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 57..96
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22
None	No IPR available	PANTHER	PTHR47487	OS06G0651300 PROTEIN-RELATED	coord: 1..187
None	No IPR available	PANTHER	PTHR47487:SF8	OS06G0651300 PROTEIN	coord: 1..187

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0006436.1	Lag0006436.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding