Lag0006129 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0006129
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	chr6: 37829516 .. 37834267 (+)
RNA-Seq Expression	Lag0006129
Synteny	Lag0006129

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTTCAATAATACCGAAGACACTGAGTCCCATACCACAAGGTGGTGGAAATTATGGGGAAAAGCCTGAGAAGTTCAACGGAAGTGACTTCAAAGGTTGGCAACAAAAGATGTTGTTCTATCTCACAACATTGAGTCTGGCAAGATTTCTCAAAGAAGATGCTCATGTTCTGGATGAAGGAGAGACCGACAAAGAAAAGTTGATGGCACTTGAGGCATGGAAACATGTAGAATATTTGTGCAGGAACTATATCTTGAATGGACTAGACAACACACTATATAATGTTTATAGTGGGGTTGATTCGGCAAAAGGTCTTTGGGAATCACTGGAAAAGAAATATAAGACGGAGGATGCTGGAGTAAAGAAATTTATAGTTGGAAAATTTCTAGACTATAAAATGGTTGATTCCAGAACCGTCATAAGCCAGGTTCAAAAACTTTAAGTTCTCTTACATGAGATTGTTGGCACCCTTTCACAAACACTTAAGGAAACACGAAAAACCAAATCAATCCGAACCCAACGATAGCGTTGTTTCCTTAAGACAATTTTGTTCCCTCTATGGTGCTCAAGATATCACGAACAATTGTCTCCCAGGATAGGACGAATTACCCACCTATGAATGTAGCACTCCAATCACAGGACTCTCGAACACTGGTATTTAAGTAATCGTACAGAGAAAAGTAGGAGAAGAGTTTTTAAAGAAGAGTTTGTATCTTGTTCTTTTTCTTATATTCAAAACTCAAAATGAATCACATATTTATAGATTATTTGTGGCCATTCAAATAGTCACATCTCTTCGTGTAAGGGTTGTGTCTTTTGATAAATGGACACATCCATTCACATAGAGTTGTATCCTTTTACCAAAAGACACACCCTTTCACATAGGGTTGTGTCCTTTACAAAAGACACACCCTTTTACATAAGGTTGTGTCCTTTATCAAAAGACATACCCTTTCACGTAAAGTTGTGATTCTTTATTTTATTAAAATAATTTTATTCATATATCCAACAAATACAATATGAGTGATGGAGATGTTCAAGTGAACTCTGACATGTACTGTGCTTTTACAATGACATGAAATTTTTTTTTTCCTTTTCTTTTCACTAGTTTTTCACCACGTGCGATGCACGTTTATGTCTTTTAATTTATTCAATTTCATCTTAATATTTAAGAAGTTTTAATTTAATCTCATTTTGTTTTTCTCATTAATAGTTTTCAAGTTTATATTCTTAAAAACAAACTAAATGATGAATGTTAGATGATTATGCAATTTGTAAAAAAAAATTATAAGGAAAATCAATATAGCATGACAATGAATAAAATGAAGAAAAACACACTTAAAGAAGGAGAAGAAGAAGAATACATCGAAGAAGATAAACTCCAATGTTTGTGAGAAGATATTGAAGAGTGCTCTTTTATTTAAATGTTGTCGAAAAAACTTTATATGATATATAGTATATTATTTAATACTATAGTTTTAAAATGATGTAAGATTAATAATTTTTAATTGTACATAATTTAACTTAAACTAAATTTATTGTAAAGTTTTTGGCAAAACAAAATTTATTTTAATATAACTCACTCTTTATGATTTATAAGTATAATATTACAAAATAGTTTTTTTTTTCGAGTAAAAGATATTATAAGAACCTAATTTTCTTTTATGTATTTAATAAGATAAAATATATATTAAAAAATTGTATCAATTGTTAGTCTGAGAAAAGATATTAGATTGAAATCTTATTTTTTAAGAAAATGAGTTCTAATATATATTTTTTTTAGCTTAGTTATTTTTATTTAATACTTACAACATAAAATGTAATGTTTATTTTTTAAAATATAAAAATAAAGGTAATTGTATGGTTTCTTATTCTCGTGATTTGAAGGAGAAAATTAATGAATATAATCATACACTGCAAATTAAATTTAAAAAGTTTGTATTTTATATAAAGTTTCATAATAATTATTTTATTATAAAATAAACACTAAAAACAATTAAAAAAATAATAATAAGCACTAAAACTAAAATACATATGTAATGAGAGAATACCCGAGGTTAAAACATATATTATAAGAACCTAATTTTCTTTTATGTATTTAATAAGATAAAATATATATTAAAAAATTGTATCAATTGTTAGCCTGTGAAAAGATATTAGATTGAAATCCTATTTTTTAAGAAAATGAGTTCTGATATTTTTTTTTATAGCTTAGTTATTTTTATTTAATACTTACAACATAAAATGTAATGTTTATTTTTTAAAATATAAAAATAAAGGTAATTGTATGGTTTCTTATTCTCGTGATTTTAAGGAGAAAATTAATGAATATAATCATATACTGCAAAATAAATTTAAAAAGTTTGTATTTTATATAAAGTTTGATAATAATTATTCTATTATAAAATAAACACTAAAAACAATTAAAAAAAATAATAATAAGCACTAAAACTAAAATACATATGTAATGAGAGAATACCCGAGATTAAAACATATATACATTTGAATTCAATTGACGTGATTAATCTATAACTCTCTTATTTACATATCTTGAGTCTTCTATTAAATTGCAAAGTATCAACACTACATCAAAAAAACAAACTAAAGATGAATGTTGGATTATGCACTTTGAAAAACAAACTAAAGATGAATGTTAGATTATGCAATTTGAAAAAAAATATATAAAGGAAATCAATATTGAGACAATGAATAAAATGAAGAAAAACACACCTGAAAAAGGAGAAGGAGAAGAAGAAAGCACACCGAAGAAGAAGATGAACTCCAATGTTTGTGAAAAGATGTTGAAGAGTGGTCTTTATATAGTCATAAAAATAAATAGTTACAAAACTCTTGAGTTTCATCCTTAAATATAATTAAAGTTAAAGCTCATAAGTTGGAATTAATTTAGAAAATTAAAGGGACAAAACTTTTCATATTCTAACAGTTATATCTCAAATACATATATATTAAATAAATCAACTAAATAATATAAAAAAAAGTGTTAATAAAACAACTAAATAATATTTTTTTTTATTAATTTAGATACAATCTAATAAAGTGGTAACTCGATTTGATATTTTTTTCTTAAAAAAAAGGATTTTATATTTTAACTAAATGCTAATAAATATAAAATAATTTTAAAGAATGATAATAAATGGGAAAAAAACATTAGTATTTAGTAACTTAAAAAGAAAAAAAAAACTAATAACATCAGTGTGGGTGAATAGTGAAAGATTTTCAAACTTTTTAGATTCCAACATTTAATATTTCATATGTATTTATTATTGATAATTAATTATTAATTAATTAATTTACTATTTAAAATTAATTGTTAATGGCATATCTTGAAAATTAGTAAATCCAAAAAAGGACAAAAGTGTCCAAAAAAGTTTTTCCAACATCCTCACCTTTGATAATAAATGGGGAAAAAAACCATTAGTATATAGTAACTTAAAAAGAAAAAAAGAAAACTAATAACGTGAGTGTGGGTGAATAGTGAAAGATTTTCAAACTTTTTAGATTCCAACATTTAATATTTCATATGTATTTATTATTGATAATTAATTATTAATTAATTAATTTACTATTTAAAATTAATTGTTAATGACATATCTTGAAAATTAGTAAATCCAAAAAAGGACAAAAGTGTTCAAAAAAGTTTTTCCAACATCCTCACCTTTTAATATATTATAGATTATAGATAGATAAGTTTTATATTCTTCCTTTCAAAATTTTGTTAATCTTTATAGTCACTTGTTTGTTATTCTATTTATTTCGGGAAAACTTCTAATACTATAGTAGTATGAAAAAATTTTCTATACTACTTCCATTTATTATTTGTCATGAAAGAAATATTTAACAATAGTGTGAGACCCATAGAATAAAATATTATATCATTAAATGTTTGTTAAATGATATGGTACTAGAAATTTGGATTTGTGTAAAGAAATTTTTTTGTTTTTTTGTTTTTTTTGGGAAATAGACAACCTTGTTGTTTTAACCACATGTCCATTGTTCTCTTCTGTTGTCAGGAAAAAGGATAGACATGAAAAACACTTCAAATTTAGTTGGTTCCCCTCATTCTAATTCCTTGCAAGTTGAGCAAACATGCTATTTCAACATCTAATTCTTTGCAAGTTGAGCAAAAATGCATTTTCCAAAAATAATTGTAGATTTTTTTTAAAAAAAAAAAAAAAATTGAGTCCTTATAACTCCGATAATATTTTGAAAAAAAAAATGAAGACATGTGGATTTGATTTTAAGAAAGGAGATCCCATCATCAAAACTTGTAAATAATCCCCACAAACTATGTAATTGCTCATCGGTTGATATTGCAAAATATGTTTTAGTAAATGTTTGGAAATGATTTTGAAATGGTTAAAATAACTTTTGTTGATGGTCGATTTTGGTTAGAGGGAACTCACCTAACCTTCACGTGCCACCAACGGTAAATTTGTAGATGAGGGGAGAAGACGTGGCCTGCAAGACGGAAAACCTGCACACCGGTGTGGTGCTAGTCACACCGACTCCGATGCTTAAGTCAGAAAACGGAAGTATGGGGGCTAGAGAGTAAGAGAAGAGAGTGGAGAGTTCGGGTCCCCTTCTTCAGTAGCGAAGAGGGGTATAAATACCTGCTCATGCTCCTAGGGTTTTTAGAAATTCGGAGGCGTTTCGGGACAAACCAGGCGGAACCGGGGCGGCCAAAGGCGATAGGGACCAAGCGGAGTCGGACGAGCTCGACCCGCGCTAG

mRNA sequence

ATGTCTTCAATAATACCGAAGACACTGAGTCCCATACCACAAGGTGGTGGAAATTATGGGGAAAAGCCTGAGAAGTTCAACGGAAGTGACTTCAAAGGTTGGCAACAAAAGATGTTGTTCTATCTCACAACATTGAGTCTGGCAAGATTTCTCAAAGAAGATGCTCATGTTCTGGATGAAGGAGAGACCGACAAAGAAAAGTTGATGGCACTTGAGGCATGGAAACATGTAGAATATTTGTGCAGGAACTATATCTTGAATGGACTAGACAACACACTATATAATGTTTATAGTGGGGTTGATTCGGCAAAAGGTCTTTGGGAATCACTGGAAAAGAAATATAAGACGGAGGATGCTGGAGTAAAGAAATTTATAGTTGGAAAATTTCTAGACTATAAAATGGTTGATTCCAGAACCGTCATAAGCCAGATATCACGAACAATTGTCTCCCAGGATAGGACGAATTACCCACCTATGAATGTAGCACTCCAATCACAGGACTCTCGAACACTGATGAGGGGAGAAGACGTGGCCTGCAAGACGGAAAACCTGCACACCGGTGTGGTGCTAGTCACACCGACTCCGATGCTTAAGTCAGAAAACGGAAGTATGGGGGCTAGAGAAAATTCGGAGGCGTTTCGGGACAAACCAGGCGGAACCGGGGCGGCCAAAGGCGATAGGGACCAAGCGGAGTCGGACGAGCTCGACCCGCGCTAG

Coding sequence (CDS)

ATGTCTTCAATAATACCGAAGACACTGAGTCCCATACCACAAGGTGGTGGAAATTATGGGGAAAAGCCTGAGAAGTTCAACGGAAGTGACTTCAAAGGTTGGCAACAAAAGATGTTGTTCTATCTCACAACATTGAGTCTGGCAAGATTTCTCAAAGAAGATGCTCATGTTCTGGATGAAGGAGAGACCGACAAAGAAAAGTTGATGGCACTTGAGGCATGGAAACATGTAGAATATTTGTGCAGGAACTATATCTTGAATGGACTAGACAACACACTATATAATGTTTATAGTGGGGTTGATTCGGCAAAAGGTCTTTGGGAATCACTGGAAAAGAAATATAAGACGGAGGATGCTGGAGTAAAGAAATTTATAGTTGGAAAATTTCTAGACTATAAAATGGTTGATTCCAGAACCGTCATAAGCCAGATATCACGAACAATTGTCTCCCAGGATAGGACGAATTACCCACCTATGAATGTAGCACTCCAATCACAGGACTCTCGAACACTGATGAGGGGAGAAGACGTGGCCTGCAAGACGGAAAACCTGCACACCGGTGTGGTGCTAGTCACACCGACTCCGATGCTTAAGTCAGAAAACGGAAGTATGGGGGCTAGAGAAAATTCGGAGGCGTTTCGGGACAAACCAGGCGGAACCGGGGCGGCCAAAGGCGATAGGGACCAAGCGGAGTCGGACGAGCTCGACCCGCGCTAG

Protein sequence

MSSIIPKTLSPIPQGGGNYGEKPEKFNGSDFKGWQQKMLFYLTTLSLARFLKEDAHVLDEGETDKEKLMALEAWKHVEYLCRNYILNGLDNTLYNVYSGVDSAKGLWESLEKKYKTEDAGVKKFIVGKFLDYKMVDSRTVISQISRTIVSQDRTNYPPMNVALQSQDSRTLMRGEDVACKTENLHTGVVLVTPTPMLKSENGSMGARENSEAFRDKPGGTGAAKGDRDQAESDELDPR

Homology

[Close]

BLAST of Lag0006129 vs. NCBI nr
Match: KAA0032601.1 (uncharacterized protein E6C27_scaffold43053G00700 [Cucumis melo var. makuwa] >TYK20884.1 uncharacterized protein E5676_scaffold284G00180 [Cucumis melo var. makuwa])

HSP 1 Score: 216.5 bits (550), Expect = 2.5e-52
Identity = 103/137 (75.18%), Postives = 118/137 (86.13%), Query Frame = 0


Query: 8   TLSPIPQGGGNYGEKPEKFNGSDFKGWQQKMLFYLTTLSLARFLKEDAHVLDEGETDKEK 67
           + + +P  G  +GEKPEKF G DFK WQQKMLFYL TL+LA+FLKEDA +L EGET+KEK
Sbjct: 5   SFNSVPVTGVAHGEKPEKFGGVDFKRWQQKMLFYLITLNLAKFLKEDAPILPEGETNKEK 64

Query: 68  LMALEAWKHVEYLCRNYILNGLDNTLYNVYSGVDSAKGLWESLEKKYKTEDAGVKKFIVG 127
            +A++AWKH EYLC+NYILNGLDNTLYNVYS VDSAK LW SLEKKYKTE AG KKFIVG
Sbjct: 65  QLAVDAWKHAEYLCKNYILNGLDNTLYNVYSSVDSAKNLWTSLEKKYKTEVAGAKKFIVG 124

Query: 128 KFLDYKMVDSRTVISQI 145
           KFLDYKMV+S+TVISQ+
Sbjct: 125 KFLDYKMVNSKTVISQV 141

[Close]

BLAST of Lag0006129 vs. NCBI nr
Match: RVW84499.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 209.9 bits (533), Expect = 2.4e-50
Identity = 95/135 (70.37%), Postives = 120/135 (88.89%), Query Frame = 0


Query: 10  SPIPQGGGNYGEKPEKFNGSDFKGWQQKMLFYLTTLSLARFLKEDAHVLDEGETDKEKLM 69
           S +P     +GEKPEKFNG++FK WQQKMLFYLTTL+LARFL E+  +L+EGET+KEK++
Sbjct: 5   SNVPTMNLTHGEKPEKFNGNEFKRWQQKMLFYLTTLNLARFLHEECPILEEGETNKEKVV 64

Query: 70  ALEAWKHVEYLCRNYILNGLDNTLYNVYSGVDSAKGLWESLEKKYKTEDAGVKKFIVGKF 129
           A++AWKH ++LCRNY+LNGLDNTLYNVY  + +AK LW+SL+KKYKTEDAG+KKFIVGKF
Sbjct: 65  AVDAWKHSDFLCRNYVLNGLDNTLYNVYCSLKTAKELWDSLDKKYKTEDAGMKKFIVGKF 124

Query: 130 LDYKMVDSRTVISQI 145
           LD+KM+DS+TVISQ+
Sbjct: 125 LDFKMIDSKTVISQV 139

[Close]

BLAST of Lag0006129 vs. NCBI nr
Match: RVW42300.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 209.5 bits (532), Expect = 3.1e-50
Identity = 97/153 (63.40%), Postives = 125/153 (81.70%), Query Frame = 0


Query: 10  SPIPQGGGNYGEKPEKFNGSDFKGWQQKMLFYLTTLSLARFLKEDAHVLDEGETDKEKLM 69
           S +P     +GEKPEKFNG++FK WQQKMLFYLTTL+LARFL E+  +L+EGET+KEK+ 
Sbjct: 5   SNVPTMNLTHGEKPEKFNGNEFKRWQQKMLFYLTTLNLARFLHEECPILEEGETNKEKVA 64

Query: 70  ALEAWKHVEYLCRNYILNGLDNTLYNVYSGVDSAKGLWESLEKKYKTEDAGVKKFIVGKF 129
           A++AWKH ++LCRNY+LNGLDNTLYNVY  + + K LW+SL+KKYKTEDAG+KKFIVGKF
Sbjct: 65  AVDAWKHSDFLCRNYVLNGLDNTLYNVYCSLKTPKELWDSLDKKYKTEDAGMKKFIVGKF 124

Query: 130 LDYKMVDSRTVISQISRTIVSQDRTNYPPMNVA 163
           LD+KM+DS+TVISQ+    V     +Y  M+++
Sbjct: 125 LDFKMIDSKTVISQVQELQVILHEIHYEGMSLS 157

[Close]

BLAST of Lag0006129 vs. NCBI nr
Match: RVW26252.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 208.4 bits (529), Expect = 6.9e-50
Identity = 95/135 (70.37%), Postives = 118/135 (87.41%), Query Frame = 0


Query: 10  SPIPQGGGNYGEKPEKFNGSDFKGWQQKMLFYLTTLSLARFLKEDAHVLDEGETDKEKLM 69
           S +P     +GEKPEKFNG++FK WQQKMLFYLTTL+LARFL E+  +L+EGET+KEK+ 
Sbjct: 5   SNVPTMNLTHGEKPEKFNGNEFKRWQQKMLFYLTTLNLARFLHEECPILEEGETNKEKVA 64

Query: 70  ALEAWKHVEYLCRNYILNGLDNTLYNVYSGVDSAKGLWESLEKKYKTEDAGVKKFIVGKF 129
           A++AWKH ++LCRNY+LNGLDNTLYNVY  +  AK LW+SL+KKYKTEDAG+KKFIVGKF
Sbjct: 65  AVDAWKHFDFLCRNYVLNGLDNTLYNVYCSLKIAKELWDSLDKKYKTEDAGMKKFIVGKF 124

Query: 130 LDYKMVDSRTVISQI 145
           LD+KM+DS+TVISQ+
Sbjct: 125 LDFKMIDSKTVISQV 139

[Close]

BLAST of Lag0006129 vs. NCBI nr
Match: RVW83338.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 206.8 bits (525), Expect = 2.0e-49
Identity = 94/135 (69.63%), Postives = 118/135 (87.41%), Query Frame = 0


Query: 10  SPIPQGGGNYGEKPEKFNGSDFKGWQQKMLFYLTTLSLARFLKEDAHVLDEGETDKEKLM 69
           S +P     +GEKPEKFNG++FK WQQKMLFYLTTL+LARFL E+  +L+EGET+KEK+ 
Sbjct: 5   SNVPTMNLTHGEKPEKFNGNEFKRWQQKMLFYLTTLNLARFLHEECPILEEGETNKEKVA 64

Query: 70  ALEAWKHVEYLCRNYILNGLDNTLYNVYSGVDSAKGLWESLEKKYKTEDAGVKKFIVGKF 129
           A++AWKH ++LCRNY+LNGLDNTLYNVY  + +AK LW+SL+KKYKTEDAG+KKFIVGKF
Sbjct: 65  AVDAWKHSDFLCRNYVLNGLDNTLYNVYCSLKTAKELWDSLDKKYKTEDAGMKKFIVGKF 124

Query: 130 LDYKMVDSRTVISQI 145
           LD+KM+DS+ VISQ+
Sbjct: 125 LDFKMIDSKIVISQV 139

[Close]

BLAST of Lag0006129 vs. ExPASy TrEMBL
Match: A0A5A7SSS0 (CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold284G00180 PE=4 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 1.2e-52
Identity = 103/137 (75.18%), Postives = 118/137 (86.13%), Query Frame = 0


Query: 8   TLSPIPQGGGNYGEKPEKFNGSDFKGWQQKMLFYLTTLSLARFLKEDAHVLDEGETDKEK 67
           + + +P  G  +GEKPEKF G DFK WQQKMLFYL TL+LA+FLKEDA +L EGET+KEK
Sbjct: 5   SFNSVPVTGVAHGEKPEKFGGVDFKRWQQKMLFYLITLNLAKFLKEDAPILPEGETNKEK 64

Query: 68  LMALEAWKHVEYLCRNYILNGLDNTLYNVYSGVDSAKGLWESLEKKYKTEDAGVKKFIVG 127
            +A++AWKH EYLC+NYILNGLDNTLYNVYS VDSAK LW SLEKKYKTE AG KKFIVG
Sbjct: 65  QLAVDAWKHAEYLCKNYILNGLDNTLYNVYSSVDSAKNLWTSLEKKYKTEVAGAKKFIVG 124

Query: 128 KFLDYKMVDSRTVISQI 145
           KFLDYKMV+S+TVISQ+
Sbjct: 125 KFLDYKMVNSKTVISQV 141

[Close]

BLAST of Lag0006129 vs. ExPASy TrEMBL
Match: A0A438HJC7 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_1271 PE=4 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 1.2e-50
Identity = 95/135 (70.37%), Postives = 120/135 (88.89%), Query Frame = 0


Query: 10  SPIPQGGGNYGEKPEKFNGSDFKGWQQKMLFYLTTLSLARFLKEDAHVLDEGETDKEKLM 69
           S +P     +GEKPEKFNG++FK WQQKMLFYLTTL+LARFL E+  +L+EGET+KEK++
Sbjct: 5   SNVPTMNLTHGEKPEKFNGNEFKRWQQKMLFYLTTLNLARFLHEECPILEEGETNKEKVV 64

Query: 70  ALEAWKHVEYLCRNYILNGLDNTLYNVYSGVDSAKGLWESLEKKYKTEDAGVKKFIVGKF 129
           A++AWKH ++LCRNY+LNGLDNTLYNVY  + +AK LW+SL+KKYKTEDAG+KKFIVGKF
Sbjct: 65  AVDAWKHSDFLCRNYVLNGLDNTLYNVYCSLKTAKELWDSLDKKYKTEDAGMKKFIVGKF 124

Query: 130 LDYKMVDSRTVISQI 145
           LD+KM+DS+TVISQ+
Sbjct: 125 LDFKMIDSKTVISQV 139

[Close]

BLAST of Lag0006129 vs. ExPASy TrEMBL
Match: A0A438E3U6 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_3747 PE=4 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 1.5e-50
Identity = 97/153 (63.40%), Postives = 125/153 (81.70%), Query Frame = 0


Query: 10  SPIPQGGGNYGEKPEKFNGSDFKGWQQKMLFYLTTLSLARFLKEDAHVLDEGETDKEKLM 69
           S +P     +GEKPEKFNG++FK WQQKMLFYLTTL+LARFL E+  +L+EGET+KEK+ 
Sbjct: 5   SNVPTMNLTHGEKPEKFNGNEFKRWQQKMLFYLTTLNLARFLHEECPILEEGETNKEKVA 64

Query: 70  ALEAWKHVEYLCRNYILNGLDNTLYNVYSGVDSAKGLWESLEKKYKTEDAGVKKFIVGKF 129
           A++AWKH ++LCRNY+LNGLDNTLYNVY  + + K LW+SL+KKYKTEDAG+KKFIVGKF
Sbjct: 65  AVDAWKHSDFLCRNYVLNGLDNTLYNVYCSLKTPKELWDSLDKKYKTEDAGMKKFIVGKF 124

Query: 130 LDYKMVDSRTVISQISRTIVSQDRTNYPPMNVA 163
           LD+KM+DS+TVISQ+    V     +Y  M+++
Sbjct: 125 LDFKMIDSKTVISQVQELQVILHEIHYEGMSLS 157

[Close]

BLAST of Lag0006129 vs. ExPASy TrEMBL
Match: A0A438CSS8 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_823 PE=4 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 3.3e-50
Identity = 95/135 (70.37%), Postives = 118/135 (87.41%), Query Frame = 0


Query: 10  SPIPQGGGNYGEKPEKFNGSDFKGWQQKMLFYLTTLSLARFLKEDAHVLDEGETDKEKLM 69
           S +P     +GEKPEKFNG++FK WQQKMLFYLTTL+LARFL E+  +L+EGET+KEK+ 
Sbjct: 5   SNVPTMNLTHGEKPEKFNGNEFKRWQQKMLFYLTTLNLARFLHEECPILEEGETNKEKVA 64

Query: 70  ALEAWKHVEYLCRNYILNGLDNTLYNVYSGVDSAKGLWESLEKKYKTEDAGVKKFIVGKF 129
           A++AWKH ++LCRNY+LNGLDNTLYNVY  +  AK LW+SL+KKYKTEDAG+KKFIVGKF
Sbjct: 65  AVDAWKHFDFLCRNYVLNGLDNTLYNVYCSLKIAKELWDSLDKKYKTEDAGMKKFIVGKF 124

Query: 130 LDYKMVDSRTVISQI 145
           LD+KM+DS+TVISQ+
Sbjct: 125 LDFKMIDSKTVISQV 139

[Close]

BLAST of Lag0006129 vs. ExPASy TrEMBL
Match: A5CBN2 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_016964 PE=4 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 9.7e-50
Identity = 92/126 (73.02%), Postives = 115/126 (91.27%), Query Frame = 0


Query: 19  YGEKPEKFNGSDFKGWQQKMLFYLTTLSLARFLKEDAHVLDEGETDKEKLMALEAWKHVE 78
           +GEKPEKFNG++FK WQQKMLFYLTTL+LARFL E+  +L+EGET+KEK+  ++AWKH +
Sbjct: 207 HGEKPEKFNGNEFKRWQQKMLFYLTTLNLARFLHEECPILEEGETNKEKVAVVDAWKHSD 266

Query: 79  YLCRNYILNGLDNTLYNVYSGVDSAKGLWESLEKKYKTEDAGVKKFIVGKFLDYKMVDSR 138
           +LCRNY+LNGLDNTLYNVY  + +AK LW+SL+KKYKTEDAG+KKFIVGKFLD+KM+DS+
Sbjct: 267 FLCRNYMLNGLDNTLYNVYCSLKTAKELWDSLDKKYKTEDAGIKKFIVGKFLDFKMIDSK 326

Query: 139 TVISQI 145
           TVISQ+
Sbjct: 327 TVISQV 332

[Close]

BLAST of Lag0006129 vs. TAIR 10
Match: AT4G00980.1 (zinc knuckle (CCHC-type) family protein )

HSP 1 Score: 63.9 bits (154), Expect = 2.0e-10
Identity = 36/131 (27.48%), Postives = 67/131 (51.15%), Query Frame = 0


Query: 22  KPEKFNGSDFKGWQQKMLFYLTTLSLARFLKEDAHVLDEG---ETDKEKLMALEA----W 81
           K  +F+G  +  W  +M  +L  L L   L E    +      ET+  ++   +A    W
Sbjct: 194 KISRFDGKSYLYWASQMELFLKQLKLTYVLSEPCPSIGSSQGPETNPREITRADATGKKW 253

Query: 82  KHVEYLCRNYILNGLDNTLYNVYS-GVDSAKGLWESLEKKYKTEDAGVKKFIVGKFLDYK 141
              +YLC  +++N L + LY  YS     AK LW+ L+  Y+ +++  K+  V K+++++
Sbjct: 254 LRDDYLCYTHLMNSLSDHLYRRYSQKFKHAKELWDELKWVYQCDESKSKRSQVRKYIEFR 313

Query: 142 MVDSRTVISQI 145
           MV+ R ++ Q+
Sbjct: 314 MVEERPILEQV 324

The following BLAST results are available for this feature:

BLAST of Lag0006129 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0032601.1	2.5e-52	75.18	uncharacterized protein E6C27_scaffold43053G00700 [Cucumis melo var. makuwa] >TY...	[more]
RVW84499.1	2.4e-50	70.37	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]
RVW42300.1	3.1e-50	63.40	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]
RVW26252.1	6.9e-50	70.37	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]
RVW83338.1	2.0e-49	69.63	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]

BLAST of Lag0006129 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0006129 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SSS0	1.2e-52	75.18	CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A438HJC7	1.2e-50	70.37	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX...	[more]
A0A438E3U6	1.5e-50	63.40	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX...	[more]
A0A438CSS8	3.3e-50	70.37	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX...	[more]
A5CBN2	9.7e-50	73.02	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_016964 PE=4 SV=1	[more]

BLAST of Lag0006129 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G00980.1	2.0e-10	27.48	zinc knuckle (CCHC-type) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 74..146 e-value: 1.8E-7 score: 31.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 209..238
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 195..238
None	No IPR available	PANTHER	PTHR47592:SF11	SUBFAMILY NOT NAMED	coord: 21..146
None	No IPR available	PANTHER	PTHR47592	PBF68 PROTEIN	coord: 21..146

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0006129.1	Lag0006129.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008194	UDP-glycosyltransferase activity
molecular_function	GO:0008270	zinc ion binding