Lag0005664 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0005664
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionGag/pol protein
Locationchr6: 25523488 .. 25527919 (-)
RNA-Seq ExpressionLag0005664
SyntenyLag0005664
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACTTGAGATTCCAGGACTACATGATGGAACATGGAATCCAGTTCCAACTCTCATCCCCTAGTACACCTCAGCAAAATTGTGTATCAGAAAGGAGAAATAGAACCCTGTTAGACATGGTTCGTTTGATAATGAGCTATGCTCAGTTGCCTAGCTCGTTCTGGGGGTATGCAGTAGAGACTGTAGTACACATCCTGAATAATGTTTCCTCGAAAAGTGTTTCTGAAACATCTTTCGAGCTATAGAGGGGGCGTAAACCTAGTTTTTGTTACTTCTGTATCTGGGATTGTCCAGCACACGTGCTTGTGACAAATCCTAAGAAACTGGATCTTCGTTTAAGGTTGTGCCAATTTTTTGGGTACAAAAAAGAAACACGAGGTGGTCTTTTTTACGACCCATATGAAAACATGGTGATTGTATCAACAAATGCTACTTTTTGGGAGGAATACCACATGAGAGATCATAAACCACGTAGTAACCCAAGGGGTAAAACGGTAATTTGATAAACCACTGACACGAGAGGGGTTTCTTTTTTGTGGTTGGACCACAAACAGATTGTTCATTATAGGAGCATTGATACTTAAAGAGGTAGAGGTAACTCAGGGGTAAAACGATAATTTGACCCAATTGGAGTTACAAATACTCGTGAAGGACTAACTTGCTGTTATTGGTTTATATTCGTGGACACATAATTATGTCTGCAGTGAGATGAGTGCAGTTGTGGGTCTTTAGTGGAGCGTACCCACAGTTAACAAAAATTGATTAATTGGTTAATGAGTTTAGCCAATTAATTTCATATTGTTGGAGCTTCCGATCTGCAGGTCCATTAGGTCCCACTGGTAGCTCATAAAGAGATTTGATGCAATTAAGTATTAATTGTAAATTGAAAATGTTCAATTTACCTAGAGGAATCATATAATGTATAATGATACATTATAATATAAAGTTTATGTGAAACTTTATAATATAATTTTGAATTAATTTCAAAATTATTTTTTAGAGAAATAAATAGTTGAAAGAGTTCAAATATTGATATGAATTAGATTCATATTAATAAAATATTTTAATAGAATGCCTAAAATTAAATATATGATATTTAATTGGGTAATTAATTAATTATAAAATTAATTAATTATTTATTAAATTAAATATGAATAAAATATTAGATTTTATTCATGGTCTTTTCCTATAAATAGGACCCCTGGGCTGGGGTGAAGGCACTCATTCATTCTCCTGCTCTTAGAGAATTCCCCTGAAGGCTTCCTAAACTCCCACCAGTCTCTTGTCTCCAGAAGTCACAAAGTAATATCGGTGTAGCCATGGTGGTGGTGTTTGCAATTTATGAAGCAAAACTCCAGCGAAGGATTAAGGTTCGTGGCTGAAGTGTTTTGGTAAGAACATCAAGAGTTTAGGTGATATAGTCAAGTCGCCAACAGCGGTATGATTGTGAAAATCCTTTTCCCTAAACTTGCATGAATTAAATAGATTTTAATTATGTAAATTACAACATGCTTATAAACTTTATTTTCAGCACTTTATAGATGTTGAATATTGTTCTTTTGCCATTCATATTGGTATTTTAATATGGATTAAAACAAAGTGTAAGGTCCTCTCATAATCTTTCGATGTGCTAGGGATTTCACCCCTACAAAAAGGTCCCACAAGCTTTTGGCCTCAAGTTCTTAGAGACGTCGGGAGGTTACACTATTGGTGGTGTTTGCACAAAGGTCCCAAGTTCCCATCAATACATGAAATCAAAATAGGGGAGAATATTATTGTTAATTCCCGAGTCGTCCATGAAAGTTAGTGATTCGTATACTCTTTTACAGTGAATTAATTGAATTTAAACAATATGCTTAATCTAAACACATAGTTGAAATTGTTCTTTGTTGATTTGTCGATGTATTGGTATTTTGGAATGCAATTAAATTTGAGACGGTTCTATAGGCTTCTGCTGGGAATTTTACTCATACACAGAGTACTCTCCACTTATTACTTGGTAGTGTATACTTGCACTTAGACACCCGTCACTGCCATCTGTAAGCAACACATACTGCCACATATTTCTTCTTCTCTCCCTATCCTTCCTCCAATCACACACACTCTCTCCCTACTCTCTCTTCCCTCATTCCACTCTTTCGGCAAACAATGGATCCCAATAAAGAGGCTCGTGGAGGATAAACTTCGAGTTTGAAGAAGGAAATGGCGGCAAACAAGCTTTAGCCTCACATCATCATACAACATTTAGGAAAACCAGTGCCATTGAAGTGGGACAATGTGCAAAAATGGTTAGTTGGATTATTGAAAGGGGAGAAAAGAATCGATCCAGGAACCACATTGAGAAACACGATGCGTATGATTTAAGTTGGATGAAATAGAACAAATGAGACACATATACCTTTCTAATTTATTTGATACTACACATGCCCTTAGTTAAAGGGGTAAAATGAATTCTTTAATCAAATCCACATGTAGCTTTTCTACCCAAATTAAGAATCCTCGTTATTCTTATGAGAGAAAAAGTAAAAGAAGAGAGTGGGGGTTCGAAGGGATGCAAGAGAAAGGAGAAAGAGTGGAATGGAGAGAGAGTTTAAAAGATATATAAAATGAAGAGAGTGGGGGATCAAGGGATGCAAAAGGAAAAAGAGTGGAATGGAGAGATAGTTTAAAAGATATATAAAATGAACTCAATTTTTACATTTATGATAGTTTGAAGGTTTGATTTTAACATTCAAAGTTTAGGATTCTATTTTTTATACTTTTGAAAGTTAGATGATTTAATTTTTACCGTTCAAAACTTTAGGTGTAATTGATATATTTTTCAAAAAAAAAAAAGTGCAATTGTTATAACATCATGTTTCTAGGGAGTTTTTGAAATTTGTCCTAAATAATATATAATAAGTTTGAAAAATAACATATTTAATAAAAAGTTTTTAAAATGCTAAATTATAAAAAATATCCCTAAACTATGGGGTTTGTTTAAAAAATGCCCATAAACTTTAAAAAGTTTAAAAAATACCTCTGAACTTTAAAAAATGTTTAAAAATACCATCGTCGTTAATTTTTGGATGAAAATCATTAAAAATTTCAGTTTCATTAATACTCTTTAACTTTCAAAAGATTTTAAAAAATAACCTTATTAGAAAATGCTTATTCTTTGTTTCATTCCCTCACCATAAATTATTCTTCCATGAAAATTAATGAGAAGCTTTACCTATTTTCATGTATTCATACACTAGAAACTTTTTTCTCTTTCAACACATCATTCCAAAAGCTTGACTAGATTTCAACAATGTATTTTCGTAACATTTTTAACGGTTTTACCGGTTCCCATCCAAAAATTAACTGCAAAAGTATTTTTGAAACGTTTTGTAAAGTTGAGGGGCATTTTTTAAACAAACCCGATAGTTGAGGTTTTTTTTTTTTTTTTTAATTACAATATGAATAAAAAATCTCCCATTTTTTTAGCCCACTCTAAAATAAAATAGAAATGAATAAAAGAAGGAAGGAAACCCTAAAGGTCACTCCACTTCTTCTTCTTCACGCTGTTTCCTCCTCCGTTTCCGCAGCTCAGTGTCGCCACCGCCTTTCTCCCGTTCACTGCTGCCACCGCCGTCGTCTTTCTTCCGTTTGTGCCGCCGCAGCCTTCCCGGTTTTCTACTCCGTTGCTGTTAAATTCGTGTTTCCGTTTGTTCAAATCTCCTGCAACCTCTCTCACTCTCAGCTCTCAAGTCGCTCCAAAATCTCTAATCCATTTCTCTCCATCTGCAGATTCATCAACCTCACGCCCCAGAAGTCGCCCATCTCTCTCACCGGATCGTCCCTCGCCCATTCAAGGTTTGCTCGCCATCAATGGTTTCTTTTAGATTCTTCTCAATCTCCATCTCTCCCTCACTCACGGTTCGGAAATGTAGCTTGAATGTCAAATATCACAAACTAATGGTGCATTGAATGTCTAATCTCTTCTACTCGAAAACGGAACCCCTTTTGTACTTTGTAGTTTGGTTCCACCTCATTTCAAGTTTCAACTCCATGGCCCTTTGCTGCGTGAGTGTTATCTCTTACCTCCGTTGCTTGCTGGAACACCGCAAGAATTTACTTTTCAGTTTCAGTGCATTGCATATTTGAGGATCCTTCTTCGTGTATCTTATTCGTCTCAAATCATCAGCCCCCCTGAAGTTGTGTCTACTCTCGCATGTCCTCTATTTCTCTCTATCAGACGTTTCATCGTTTTAGGTTTCGGGCTCGGTAAATTCTATTTGTTTTAAAATACCAGCCCCCATGAAGTCGTATCTACTCTCGTATCGTCCTCTGTTTCTCTCTCTCTGATGTTTCATGGTATTAGGTTTCGGGCTCGGTAAATTTATTTACTTATTGGTCGTCTACAACTCTATTCGAAGATTTGGGTCATGTTCAGATCCATCAATATGA

mRNA sequence

ATGGACTTGAGATTCCAGGACTACATGATGGAACATGGAATCCAGTTCCAACTCTCATCCCCTAGTACACCTCAGCAAAATTGTGTATCAGAAAGGAGAAATAGAACCCTGTTAGACATGGTTCGTTTGATAATGAGCTATGCTCAGTTGCCTAGCTCGTTCTGGGGGCTTCCTAAACTCCCACCAGTCTCTTGTCTCCAGAAGTCACAAAGTAATATCGGTGTAGCCATGGTGGTGGTGTTTGCAATTTATGAAGCAAAACTCCAGCGAAGGATTAAGGGATTTCACCCCTACAAAAAGGTCCCACAAGCTTTTGGCCTCAAGTTCTTAGAGACGTCGGGAGGTTACACTATTGGTGGTGTTTGCACAAAGCTCAGTGTCGCCACCGCCTTTCTCCCGTTCACTGCTGCCACCGCCGTCGTCTTTCTTCCGTTTGTGCCGCCGCAGCCTTCCCGATTCATCAACCTCACGCCCCAGAAGTCGCCCATCTCTCTCACCGGATCGTCCCTCGCCCATTCAAGTTTGGTTCCACCTCATTTCAAGTTTCAACTCCATGGCCCTTTGCTGCGTGAGTGTTATCTCTTACCTCCGTTGCTTGCTGGAACACCGCAAGAATTTACTTTTCAGTTTCAGTGCATTGCATATTTGAGGATCCTTCTTCGTGTATCTTATTCGTCTCAAATCATCAGCCCCCCTGAAGTTGTGTCTACTCTCGCATGTCCTCTATTTCTCTCTATCAGACGTTTCATCGTTTTAGGTTTCGGGCTCGGTTTCGGGCTCGGTAAATTTATTTACTTATTGGTCGTCTACAACTCTATTCGAAGATTTGGGTCATGTTCAGATCCATCAATATGA

Coding sequence (CDS)

ATGGACTTGAGATTCCAGGACTACATGATGGAACATGGAATCCAGTTCCAACTCTCATCCCCTAGTACACCTCAGCAAAATTGTGTATCAGAAAGGAGAAATAGAACCCTGTTAGACATGGTTCGTTTGATAATGAGCTATGCTCAGTTGCCTAGCTCGTTCTGGGGGCTTCCTAAACTCCCACCAGTCTCTTGTCTCCAGAAGTCACAAAGTAATATCGGTGTAGCCATGGTGGTGGTGTTTGCAATTTATGAAGCAAAACTCCAGCGAAGGATTAAGGGATTTCACCCCTACAAAAAGGTCCCACAAGCTTTTGGCCTCAAGTTCTTAGAGACGTCGGGAGGTTACACTATTGGTGGTGTTTGCACAAAGCTCAGTGTCGCCACCGCCTTTCTCCCGTTCACTGCTGCCACCGCCGTCGTCTTTCTTCCGTTTGTGCCGCCGCAGCCTTCCCGATTCATCAACCTCACGCCCCAGAAGTCGCCCATCTCTCTCACCGGATCGTCCCTCGCCCATTCAAGTTTGGTTCCACCTCATTTCAAGTTTCAACTCCATGGCCCTTTGCTGCGTGAGTGTTATCTCTTACCTCCGTTGCTTGCTGGAACACCGCAAGAATTTACTTTTCAGTTTCAGTGCATTGCATATTTGAGGATCCTTCTTCGTGTATCTTATTCGTCTCAAATCATCAGCCCCCCTGAAGTTGTGTCTACTCTCGCATGTCCTCTATTTCTCTCTATCAGACGTTTCATCGTTTTAGGTTTCGGGCTCGGTTTCGGGCTCGGTAAATTTATTTACTTATTGGTCGTCTACAACTCTATTCGAAGATTTGGGTCATGTTCAGATCCATCAATATGA

Protein sequence

MDLRFQDYMMEHGIQFQLSSPSTPQQNCVSERRNRTLLDMVRLIMSYAQLPSSFWGLPKLPPVSCLQKSQSNIGVAMVVVFAIYEAKLQRRIKGFHPYKKVPQAFGLKFLETSGGYTIGGVCTKLSVATAFLPFTAATAVVFLPFVPPQPSRFINLTPQKSPISLTGSSLAHSSLVPPHFKFQLHGPLLRECYLLPPLLAGTPQEFTFQFQCIAYLRILLRVSYSSQIISPPEVVSTLACPLFLSIRRFIVLGFGLGFGLGKFIYLLVVYNSIRRFGSCSDPSI
Homology
[Close]
BLAST of Lag0005664 vs. NCBI nr
Match: KAA0067938.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 106.7 bits (265), Expect = 3.4e-19
Identity = 51/59 (86.44%), Postives = 54/59 (91.53%), Query Frame = 0 

Query: 1   MDLRFQDYMMEHGIQFQLSSPSTPQQNCVSERRNRTLLDMVRLIMSYAQLPSSFWGLPK 60
           MDLRFQDYM+EHGIQ QLS+P TPQQN VSERRNRTLLDMVR +MSYAQLPSSFWG PK
Sbjct: 452 MDLRFQDYMIEHGIQSQLSAPGTPQQNGVSERRNRTLLDMVRSMMSYAQLPSSFWGTPK 510

[Close]
BLAST of Lag0005664 vs. NCBI nr
Match: KAA0063051.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 102.4 bits (254), Expect = 6.4e-18
Identity = 49/56 (87.50%), Postives = 52/56 (92.86%), Query Frame = 0 

Query: 1  MDLRFQDYMMEHGIQFQLSSPSTPQQNCVSERRNRTLLDMVRLIMSYAQLPSSFWG 57
          MDLRFQDYM+EHGIQ QLS+P TPQQN VSERRNRTLLDMVR +MSYAQLPSSFWG
Sbjct: 1  MDLRFQDYMIEHGIQSQLSAPGTPQQNGVSERRNRTLLDMVRSMMSYAQLPSSFWG 56

[Close]
BLAST of Lag0005664 vs. NCBI nr
Match: KAA0025945.1 (gag/pol protein [Cucumis melo var. makuwa] >KAA0026303.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0035786.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0040492.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0041262.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 102.4 bits (254), Expect = 6.4e-18
Identity = 49/56 (87.50%), Postives = 52/56 (92.86%), Query Frame = 0 

Query: 1   MDLRFQDYMMEHGIQFQLSSPSTPQQNCVSERRNRTLLDMVRLIMSYAQLPSSFWG 57
           MDLRFQDYM+EHGIQ QLS+P TPQQN VSERRNRTLLDMVR +MSYAQLPSSFWG
Sbjct: 482 MDLRFQDYMIEHGIQSQLSAPGTPQQNGVSERRNRTLLDMVRSMMSYAQLPSSFWG 537

[Close]
BLAST of Lag0005664 vs. NCBI nr
Match: TYK04171.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 102.4 bits (254), Expect = 6.4e-18
Identity = 49/56 (87.50%), Postives = 52/56 (92.86%), Query Frame = 0 

Query: 1   MDLRFQDYMMEHGIQFQLSSPSTPQQNCVSERRNRTLLDMVRLIMSYAQLPSSFWG 57
           MDLRFQDYM+EHGIQ QLS+P TPQQN VSERRNRTLLDMVR +MSYAQLPSSFWG
Sbjct: 356 MDLRFQDYMIEHGIQSQLSAPGTPQQNGVSERRNRTLLDMVRSMMSYAQLPSSFWG 411

[Close]
BLAST of Lag0005664 vs. NCBI nr
Match: KAA0063836.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK28216.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 102.4 bits (254), Expect = 6.4e-18
Identity = 49/56 (87.50%), Postives = 52/56 (92.86%), Query Frame = 0 

Query: 1   MDLRFQDYMMEHGIQFQLSSPSTPQQNCVSERRNRTLLDMVRLIMSYAQLPSSFWG 57
           MDLRFQDYM+EHGIQ QLS+P TPQQN VSERRNRTLLDMVR +MSYAQLPSSFWG
Sbjct: 92  MDLRFQDYMIEHGIQSQLSAPGTPQQNGVSERRNRTLLDMVRSMMSYAQLPSSFWG 147

[Close]
BLAST of Lag0005664 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 6.2e-08
Identity = 25/52 (48.08%), Postives = 37/52 (71.15%), Query Frame = 0 

Query: 5   FQDYMMEHGIQFQLSSPSTPQQNCVSERRNRTLLDMVRLIMSYAQLPSSFWG 57
           F++Y   HGI+ + + P TPQ N V+ER NRT+++ VR ++  A+LP SFWG
Sbjct: 560 FEEYCSSHGIRHEKTVPGTPQHNGVAERMNRTIVEKVRSMLRMAKLPKSFWG 611

[Close]
BLAST of Lag0005664 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 6.4e-05
Identity = 19/50 (38.00%), Postives = 35/50 (70.00%), Query Frame = 0 

Query: 6   QDYMMEHGIQFQLSSPSTPQQNCVSERRNRTLLDMVRLIMSYAQLPSSFW 56
           +DY+ +HGI    S P TP+ N +SER++R +++M   ++S+A +P ++W
Sbjct: 580 RDYLSQHGISHFTSPPHTPEHNGLSERKHRHIVEMGLTLLSHASVPKTYW 629

[Close]
BLAST of Lag0005664 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 47.8 bits (112), Expect = 2.4e-04
Identity = 22/51 (43.14%), Postives = 33/51 (64.71%), Query Frame = 0 

Query: 6   QDYMMEHGIQFQLSSPSTPQQNCVSERRNRTLLDMVRLIMSYAQLPSSFWG 57
           + + ++ GI + L+ P TPQ N VSER  RT+ +  R ++S A+L  SFWG
Sbjct: 561 RQFCVKKGISYHLTVPHTPQLNGVSERMIRTITEKARTMVSGAKLDKSFWG 611

[Close]
BLAST of Lag0005664 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 9.3e-04
Identity = 17/49 (34.69%), Postives = 32/49 (65.31%), Query Frame = 0 

Query: 7   DYMMEHGIQFQLSSPSTPQQNCVSERRNRTLLDMVRLIMSYAQLPSSFW 56
           +Y  +HGI    S P TP+ N +SER++R +++    ++S+A +P ++W
Sbjct: 602 EYFSQHGISHLTSPPHTPEHNGLSERKHRHIVETGLTLLSHASIPKTYW 650

[Close]
BLAST of Lag0005664 vs. ExPASy TrEMBL
Match: A0A5A7VJG3 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold138G001110 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 1.6e-19
Identity = 51/59 (86.44%), Postives = 54/59 (91.53%), Query Frame = 0 

Query: 1   MDLRFQDYMMEHGIQFQLSSPSTPQQNCVSERRNRTLLDMVRLIMSYAQLPSSFWGLPK 60
           MDLRFQDYM+EHGIQ QLS+P TPQQN VSERRNRTLLDMVR +MSYAQLPSSFWG PK
Sbjct: 452 MDLRFQDYMIEHGIQSQLSAPGTPQQNGVSERRNRTLLDMVRSMMSYAQLPSSFWGTPK 510

[Close]
BLAST of Lag0005664 vs. ExPASy TrEMBL
Match: A0A5A7TZD0 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G00090 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 3.1e-18
Identity = 49/56 (87.50%), Postives = 52/56 (92.86%), Query Frame = 0 

Query: 1   MDLRFQDYMMEHGIQFQLSSPSTPQQNCVSERRNRTLLDMVRLIMSYAQLPSSFWG 57
           MDLRFQDYM+EHGIQ QLS+P TPQQN VSERRNRTLLDMVR +MSYAQLPSSFWG
Sbjct: 482 MDLRFQDYMIEHGIQSQLSAPGTPQQNGVSERRNRTLLDMVRSMMSYAQLPSSFWG 537

[Close]
BLAST of Lag0005664 vs. ExPASy TrEMBL
Match: A0A5A7VBN3 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold258G00300 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 3.1e-18
Identity = 49/56 (87.50%), Postives = 52/56 (92.86%), Query Frame = 0 

Query: 1   MDLRFQDYMMEHGIQFQLSSPSTPQQNCVSERRNRTLLDMVRLIMSYAQLPSSFWG 57
           MDLRFQDYM+EHGIQ QLS+P TPQQN VSERRNRTLLDMVR +MSYAQLPSSFWG
Sbjct: 92  MDLRFQDYMIEHGIQSQLSAPGTPQQNGVSERRNRTLLDMVRSMMSYAQLPSSFWG 147

[Close]
BLAST of Lag0005664 vs. ExPASy TrEMBL
Match: A0A5D3BUN8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold218G00360 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 3.1e-18
Identity = 49/56 (87.50%), Postives = 52/56 (92.86%), Query Frame = 0 

Query: 1   MDLRFQDYMMEHGIQFQLSSPSTPQQNCVSERRNRTLLDMVRLIMSYAQLPSSFWG 57
           MDLRFQDYM+EHGIQ QLS+P TPQQN VSERRNRTLLDMVR +MSYAQLPSSFWG
Sbjct: 356 MDLRFQDYMIEHGIQSQLSAPGTPQQNGVSERRNRTLLDMVRSMMSYAQLPSSFWG 411

[Close]
BLAST of Lag0005664 vs. ExPASy TrEMBL
Match: A0A5A7UYE8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold430G001570 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 3.1e-18
Identity = 49/56 (87.50%), Postives = 52/56 (92.86%), Query Frame = 0 

Query: 1   MDLRFQDYMMEHGIQFQLSSPSTPQQNCVSERRNRTLLDMVRLIMSYAQLPSSFWG 57
           MDLRFQDYM+EHGIQ QLS+P TPQQN VSERRNRTLLDMVR +MSYAQLPSSFWG
Sbjct: 356 MDLRFQDYMIEHGIQSQLSAPGTPQQNGVSERRNRTLLDMVRSMMSYAQLPSSFWG 411

The following BLAST results are available for this feature:
BLAST of Lag0005664 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0067938.13.4e-1986.44gag/pol protein [Cucumis melo var. makuwa][more]
KAA0063051.16.4e-1887.50gag/pol protein [Cucumis melo var. makuwa][more]
KAA0025945.16.4e-1887.50gag/pol protein [Cucumis melo var. makuwa] >KAA0026303.1 gag/pol protein [Cucumi... [more]
TYK04171.16.4e-1887.50gag/pol protein [Cucumis melo var. makuwa][more]
KAA0063836.16.4e-1887.50gag/pol protein [Cucumis melo var. makuwa] >TYK28216.1 gag/pol protein [Cucumis ... [more]
BLAST of Lag0005664 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P109786.2e-0848.08Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
Q9ZT946.4e-0538.00Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O... [more]
P041462.4e-0443.14Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3[more]
Q94HW29.3e-0434.69Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O... [more]
BLAST of Lag0005664 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7VJG31.6e-1986.44Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold138G0011... [more]
A0A5A7TZD03.1e-1887.50Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G000... [more]
A0A5A7VBN33.1e-1887.50Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold258G0030... [more]
A0A5D3BUN83.1e-1887.50Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold218G0036... [more]
A0A5A7UYE83.1e-1887.50Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold430G0015... [more]
BLAST of Lag0005664 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 2..61
e-value: 1.9E-9
score: 39.3
IPR001584Integrase, catalytic corePROSITEPS50994INTEGRASEcoord: 1..105
score: 9.868587
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 4..56

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0005664.1Lag0005664.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding