Lag0005615 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0005615
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Ribonuclease H
Location	chr6: 23821627 .. 23821980 (+)
RNA-Seq Expression	Lag0005615
Synteny	Lag0005615

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGATAAGGAATACAAACCTCCTCAGCACACCCCGGAAGCTGAAGTCAAATCCTGACAACAGAGACAAAAGCCAGTATTGTCTCTTCCATCGAGATCATGGACATTCAACCAGGAACTGCATTCAGCTGAAAGACGAGATCGAAGCGTTGATCCGAAACGGATACCTGAAGGAATTCACCACAAAGGCCGAGGCCAACCAGAGATGGCCGAGGCCGACCAGAGATGACTCTCCTATGGCCATGGCCGAGGCCGAGCCCTACCACACCTCTTGCCAACCAGAGATGGCCGAGGCCAACCAGAGATTACTCTCCTATGGCCATGGTGGTGGACCTCTTCTGCAAATCCGTTGA

mRNA sequence

ATGGAGATAAGGAATACAAACCTCCTCAGCACACCCCGGAAGCTGAAGTCAAATCCTGACAACAGAGACAAAAGCCAGTATTGTCTCTTCCATCGAGATCATGGACATTCAACCAGGAACTGCATTCAGCTGAAAGACGAGATCGAAGCGTTGATCCGAAACGGATACCTGAAGGAATTCACCACAAAGGCCGAGGCCAACCAGAGATGGCCGAGGCCGACCAGAGATGACTCTCCTATGGCCATGGCCGAGGCCGAGCCCTACCACACCTCTTGCCAACCAGAGATGGCCGAGGCCAACCAGAGATTACTCTCCTATGGCCATGGTGGTGGACCTCTTCTGCAAATCCGTTGA

Coding sequence (CDS)

ATGGAGATAAGGAATACAAACCTCCTCAGCACACCCCGGAAGCTGAAGTCAAATCCTGACAACAGAGACAAAAGCCAGTATTGTCTCTTCCATCGAGATCATGGACATTCAACCAGGAACTGCATTCAGCTGAAAGACGAGATCGAAGCGTTGATCCGAAACGGATACCTGAAGGAATTCACCACAAAGGCCGAGGCCAACCAGAGATGGCCGAGGCCGACCAGAGATGACTCTCCTATGGCCATGGCCGAGGCCGAGCCCTACCACACCTCTTGCCAACCAGAGATGGCCGAGGCCAACCAGAGATTACTCTCCTATGGCCATGGTGGTGGACCTCTTCTGCAAATCCGTTGA

Protein sequence

MEIRNTNLLSTPRKLKSNPDNRDKSQYCLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEANQRWPRPTRDDSPMAMAEAEPYHTSCQPEMAEANQRLLSYGHGGGPLLQIR

Homology

[Close]

BLAST of Lag0005615 vs. NCBI nr
Match: XP_024029279.1 (uncharacterized protein LOC112093925 [Morus notabilis])

HSP 1 Score: 84.3 bits (207), Expect = 7.4e-13
Identity = 38/74 (51.35%), Postives = 53/74 (71.62%), Query Frame = 0


Query: 1  MEIRNTNLLSTPRKLKSNPDNRDKSQYCLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEF 60
          M+I++ NLL+ P  +K +P+ RDKS+YC FH+DHGH T +C QLK +IEALI+ G L+EF
Sbjct: 3  MQIQHQNLLTPPAPMKGDPNKRDKSKYCDFHKDHGHDTSSCFQLKGQIEALIQQGQLQEF 62

Query: 61 TTKAEANQRWPRPT 75
            +  A +R   PT
Sbjct: 63 VDRVIAKRRTALPT 76

[Close]

BLAST of Lag0005615 vs. NCBI nr
Match: XP_022158830.1 (uncharacterized protein LOC111025293 [Momordica charantia])

HSP 1 Score: 83.6 bits (205), Expect = 1.3e-12
Identity = 35/68 (51.47%), Postives = 50/68 (73.53%), Query Frame = 0


Query: 1   MEIRNTNLLSTPRKLKSNPDNRDKSQYCLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEF 60
           MEI++  LL  P ++K++   R K +YCLFHRDHGH+T++C  LK+E+E LIR GYLKE+
Sbjct: 411 MEIKDQRLLKWPERMKASSAKRSKGRYCLFHRDHGHATQDCFDLKEEVEGLIRRGYLKEY 470

Query: 61  TTKAEANQ 69
             + +A Q
Sbjct: 471 VEEPKATQ 478

[Close]

BLAST of Lag0005615 vs. NCBI nr
Match: XP_024029047.1 (uncharacterized protein LOC112093867 [Morus notabilis])

HSP 1 Score: 83.6 bits (205), Expect = 1.3e-12
Identity = 36/74 (48.65%), Postives = 53/74 (71.62%), Query Frame = 0


Query: 1   MEIRNTNLLSTPRKLKSNPDNRDKSQYCLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEF 60
           M+I++ N+L+ P  +K +P+ RDKS+YC FH+DHGH T +C QLK +IEALI+ G L+EF
Sbjct: 105 MQIQHQNMLTPPAPMKGDPNKRDKSKYCYFHKDHGHDTSSCFQLKGQIEALIQQGQLQEF 164

Query: 61  TTKAEANQRWPRPT 75
             +  A ++   PT
Sbjct: 165 VDRVIAKRKTALPT 178

[Close]

BLAST of Lag0005615 vs. NCBI nr
Match: XP_022155873.1 (uncharacterized protein LOC111022886 [Momordica charantia])

HSP 1 Score: 83.2 bits (204), Expect = 1.6e-12
Identity = 36/68 (52.94%), Postives = 49/68 (72.06%), Query Frame = 0


Query: 1  MEIRNTNLLSTPRKLKSNPDNRDKSQYCLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEF 60
          MEI++  LL  P ++K+ P  R K QY LFHRDHGH+T++C  LK+E+E LIR+GYLKE+
Sbjct: 17 MEIKDQRLLKWPERMKAPPSKRSKGQYWLFHRDHGHATQDCFDLKEEVEGLIRSGYLKEY 76

Query: 61 TTKAEANQ 69
              +A Q
Sbjct: 77 VEDPKATQ 84

[Close]

BLAST of Lag0005615 vs. NCBI nr
Match: XP_024021642.1 (uncharacterized protein LOC112091676 [Morus notabilis])

HSP 1 Score: 82.4 bits (202), Expect = 2.8e-12
Identity = 39/84 (46.43%), Postives = 56/84 (66.67%), Query Frame = 0


Query: 1   MEIRNTNLLSTPRKLKSNPDNRDKSQYCLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEF 60
           M+I++ NLL+ P  +K +P+ RDKS+YC FH+DHGH T +C QLK +IEALI+ G L+EF
Sbjct: 76  MQIQHQNLLTPPAPMKGDPNKRDKSKYCYFHKDHGHETSSCFQLKGQIEALIQQGQLQEF 135

Query: 61  TTKAEANQRWPRPTRDDSPMAMAE 85
             +  A +R    T      A+A+
Sbjct: 136 VDRVIAERRIALSTTMRKQTAVAQ 159

The following BLAST results are available for this feature:

BLAST of Lag0005615 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_024029279.1	7.4e-13	51.35	uncharacterized protein LOC112093925 [Morus notabilis]	[more]
XP_022158830.1	1.3e-12	51.47	uncharacterized protein LOC111025293 [Momordica charantia]	[more]
XP_024029047.1	1.3e-12	48.65	uncharacterized protein LOC112093867 [Morus notabilis]	[more]
XP_022155873.1	1.6e-12	52.94	uncharacterized protein LOC111022886 [Momordica charantia]	[more]
XP_024021642.1	2.8e-12	46.43	uncharacterized protein LOC112091676 [Morus notabilis]	[more]

BLAST of Lag0005615 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..15
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0005615.1	Lag0005615.1	mRNA