Lag0005424 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0005424
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
Descriptionserine/threonine-protein phosphatase 7 long form homolog
Locationchr6: 17444023 .. 17446952 (+)
RNA-Seq ExpressionLag0005424
SyntenyLag0005424
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTCTACCAACTTACTTGGCATGTTATGCACCACCGTTCAAACCAATCCCCGATTAGAGTTGTTGGCCTGATCCAAACTTCCCGAAAGTTTATCCTAACGTCGAGTTGGCTAGAGGTATGGGTCGACCATGCAGTTCTCGTATAAGAAACTAGATGGATTGGAGGGAGCCAACGAATAGAGCACGCTGTGAATTTTGTAGGCAAGAAGAACATAACCGAAGAAATTGTCTTCATCTGCAGCTAGACGACTGAATTAGCATTTAAATGTTGTCTACATTTTTCCCCTTTTGTATGAAATATTTGTAACTTAAGTGCTAATTTTTTTTGAAATAGAAAGCAAATTATTCATTGTGTGCAAAATAACAATTTTATTATTCATGTAACTAATACTTACTCTTAATATACTTAAATGTCATTAGATGGAAGATGATATTACAATTGGTCCGTATGACCCATCTGTTCTACACCTCCAACCCAATCATCGATCTGAACTGGTTTGGGAGAATGTTTACTATAATGCCAAGCATTGTAGACGTCACGAGGCTGTCCTGAAGAGGTTTTCGAGCCCAGACCCTCAAATTGAGCCATACCTACGAGCATCCGAGTTTTATGGTGTGTCATGCATTTAATTCATCCAGTTAGATTAAACCTAATTACTGCAATGGTGGAGCGCTCGCGGTAAGAGACACACACTTTCCTTCTTCCACATGGAGAGTGCACTATCACCCTACAGGACATTGCCATACAGTTCGGACTTCCCATTGACAGTGGCGAATCTACAACTTCGCGTCGGGGGGGGGGCTATATAGAAATGAGGGAAAATATCAATTTTAACCTTACACTTGGTAGTGAGGATTTATTTTTATCTTAAACTTTCAATTTTGTTCAATTGCACATTGAACTTGAATGTAAGTGTTGTAATTTTTCCCTTAACTTTAAAAAGTGTTGCAATTTTTACCTTCGATTAAAACAAAAACAACAATCAATTATAGAACATATATTGGTATGACATTGATTAGATTAAGACAAAAACAACAATGGAGTTACAACATTTGTCTAAGTTCAAGGTCCAAATGGATGACATTGAAAATTTATTGTGAAAATTGATACAACTTGTCAAGTTTAGGGTTAAAAATTGATTTTTTCCTCTAAAGATAATTTTGAATGCATTAATATTAGTTTATATATTTTAATATTAAATTGGTTAAATTATAAGTTTGATCCCTAAATTTTCAAGATTATATTTAATAAGTCTCAAATTTTAATTGTTTTTTTTTTTTAACTAATAGGTTAAGGATCTATTAGACATCAAATTGAAAAGATTGAAATCTACTCAATACATAATTATAAGTTTCAAAACCAATTAAATACCTTTTAAATTTAGGAGCCTATTAGAGGCAAATTCTTAAAGTTGATATTTCAAACTTATAATTTAATCAATTAAGTTTGTTCCATAGTAAAAATAAAAGTTTCTTTTAATATATAAATGTAAAAGAAAAATAATGAAATGGTAATATTACAAGTTAGATTTGTTTTACTACAATGAAAAATTACACATTTATTGTATTTTTAAAAATAATTTACTAAATAGAAATAATTATATTTATTTTTATGTATATTTGATTTAAGAAAATAAAATTTAAATTTACGGATAAAATTGAAACCAGAAAAAAAATATTGACATTATATTGAAAAACTAATTTATAAACAAAGAAAGAATATGGTATTGAAAAGAGAAAAGGAAAAAAAAAATGTACGCTTTAAATTAAAACTGGAAACATAATTTGTAAAATTTTTTTAAAAAAATTAATGCTGAAAGAAGAAATGAAAAACAGACACTTAAAATTGAAATTGGGAAAGTAATCTGTAAAAATTTGAAAAAAAAAATAATACTGAAAAAGGAAAATGAAAAAAATAAATATAAGAACTAACATATGCGCATGGTGGGACTTGAACCATGGTGAGAAAGGAATTGAGGAGGGGCTTGCCCCGGGCTGTCTGATTACAATGCGAAACTAATGCACAATCCAGTGTACGGACAGTCGGGGGGACGCTGATTTTCTCAGCTCCTCGGTCCAGTGTACGCATGGCCGGGAGGACGCTCGGGGTCCCTGTTCCACGATTAAGTGTACGGAACGGTCGGGAGGATGCTCATTATCCCTGTTCTACGATCTGGTGTACGGACGGTCGGGGGGACGCTGATTTTCTTGACTCCTCGGTCTAGTGTACGCATGGCCGGGAGGACGCTCGGGGTCTCTGTTCCATGATCAAGTGTACGGAACAGTCGGGAGGACGCTCATTGTCCCCGTTCCACGATCCGGTGTACGGACGGTCGGGGGGACGCTGATTTTCTCAGCTCCTCGGTCTAGTGTACGCATGGCCGGGAGGACGCTTGGGGTCCATGTTCCACGATCAAGTGTACGGAACGGTCGGCAGGACGCTCATTGTCCCTGTTCCACGATCCGGTGTACGGAACGGTCGGGGGGACGCTGATTTTCTCAGCTCCTCGGTCTAGTGTACGCATGGCCGGGAGGACGCTCGGGGTCCCTGTTCCACGAACTAGTGTACGGAACGATCGGGAGGACGCTCATTGTCCCTGTTCCACGATCCGGTGTACGGACGGTCGGGGGGACGCTGATGTTCTCAGCTCCTCGATCCAATGTACGCATACCCGAGAGGACGCTCGGGGTCCCTGTTCCACGATCAAGTGTACGGAAAAGTCGGGAGGACGCTCATTGTCCCAGTTCCACGATCCGGTGTACGGACGGTCAGGGAGACGCTGATTTTCTCGGCTCCTCGATCCAGTGTACGCATACCCGGGAGGACGCTCGGGGTCCCTGTTCCACGATCAAGTGTACGGAACGGTCGGGAGGACGCTCATTGTCCCTGTTCCACGATCCGGTGTACGGACGGTCGGGGGGATGCTGA

mRNA sequence

ATGCTCTACCAACTTACTTGGCATGTTATGCACCACCGTTCAAACCAATCCCCGATTAGAGTTGTTGGCCTGATCCAAACTTCCCGAAAGTTTATCCTAACGTCGAGTTGGCTAGAGATGGAAGATGATATTACAATTGGTCCGTATGACCCATCTGTTCTACACCTCCAACCCAATCATCGATCTGAACTGGTTTGGGAGAATGTTTACTATAATGCCAAGCATTGTAGACGTCACGAGGCTGTCCTGAAGAGGTTTTCGAGCCCAGACCCTCAAATTGAGCCATACCTACGAGCATCCGAGTTTTATGTCGGGGGGACGCTGATTTTCTCAGCTCCTCGGTCCAGTGTACGCATGGCCGGGAGGACGCTCGGGGTCCCTGTTCCACGATTAAGTGTACGGAACGTGTACGCATGGCCGGGAGGACGCTCGGGGTCTCTGTTCCATGATCAAGTGTACGGAACAGTCGGGAGGACGCTCATTGTCCCCGTTCCACGATCCGGTGTACGGACGGTCGGGGGGACGCTGATTTTCTCAGCTCCTCGGTCTAGTGTACGCATGGCCGGGAGGACGCTTGGGGTCCATGTTCCACGATCAAGTCTCCTCGGTCTAGTGTACGCATGGCCGGGAGGACGCTCGGGGTCCCTGTTCCACGAACTAGTGTACGGAACGATCGGGAGGACGCTCATTGTCCCTGTTCCACGATCCGGTGTACGGACGGTCGGGGGGACGCTGATGTTCTCAGCTCCTCGATCCAATGTACGCATACCCGAGAGGACGCTCGGGGTCCCTGTTCCACGATCAAGTGTACGGAAAAGTCGGGAGGACGCTCATTGTCCCAGTTCCACGATCCGGTGTACGGACGGTCAGGGAGACGCTGATTTTCTCGGCTCCTCGATCCAGTGTACGCATACCCGGGAGGACGCTCGGGGTCCCTGTTCCACGATCAAGTGTACGGAACGGTCGGGAGGACGCTCATTGTCCCTGTTCCACGATCCGGTGTACGGACGGTCGGGGGGATGCTGA

Coding sequence (CDS)

ATGCTCTACCAACTTACTTGGCATGTTATGCACCACCGTTCAAACCAATCCCCGATTAGAGTTGTTGGCCTGATCCAAACTTCCCGAAAGTTTATCCTAACGTCGAGTTGGCTAGAGATGGAAGATGATATTACAATTGGTCCGTATGACCCATCTGTTCTACACCTCCAACCCAATCATCGATCTGAACTGGTTTGGGAGAATGTTTACTATAATGCCAAGCATTGTAGACGTCACGAGGCTGTCCTGAAGAGGTTTTCGAGCCCAGACCCTCAAATTGAGCCATACCTACGAGCATCCGAGTTTTATGTCGGGGGGACGCTGATTTTCTCAGCTCCTCGGTCCAGTGTACGCATGGCCGGGAGGACGCTCGGGGTCCCTGTTCCACGATTAAGTGTACGGAACGTGTACGCATGGCCGGGAGGACGCTCGGGGTCTCTGTTCCATGATCAAGTGTACGGAACAGTCGGGAGGACGCTCATTGTCCCCGTTCCACGATCCGGTGTACGGACGGTCGGGGGGACGCTGATTTTCTCAGCTCCTCGGTCTAGTGTACGCATGGCCGGGAGGACGCTTGGGGTCCATGTTCCACGATCAAGTCTCCTCGGTCTAGTGTACGCATGGCCGGGAGGACGCTCGGGGTCCCTGTTCCACGAACTAGTGTACGGAACGATCGGGAGGACGCTCATTGTCCCTGTTCCACGATCCGGTGTACGGACGGTCGGGGGGACGCTGATGTTCTCAGCTCCTCGATCCAATGTACGCATACCCGAGAGGACGCTCGGGGTCCCTGTTCCACGATCAAGTGTACGGAAAAGTCGGGAGGACGCTCATTGTCCCAGTTCCACGATCCGGTGTACGGACGGTCAGGGAGACGCTGATTTTCTCGGCTCCTCGATCCAGTGTACGCATACCCGGGAGGACGCTCGGGGTCCCTGTTCCACGATCAAGTGTACGGAACGGTCGGGAGGACGCTCATTGTCCCTGTTCCACGATCCGGTGTACGGACGGTCGGGGGGATGCTGA

Protein sequence

MLYQLTWHVMHHRSNQSPIRVVGLIQTSRKFILTSSWLEMEDDITIGPYDPSVLHLQPNHRSELVWENVYYNAKHCRRHEAVLKRFSSPDPQIEPYLRASEFYVGGTLIFSAPRSSVRMAGRTLGVPVPRLSVRNVYAWPGGRSGSLFHDQVYGTVGRTLIVPVPRSGVRTVGGTLIFSAPRSSVRMAGRTLGVHVPRSSLLGLVYAWPGGRSGSLFHELVYGTIGRTLIVPVPRSGVRTVGGTLMFSAPRSNVRIPERTLGVPVPRSSVRKSREDAHCPSSTIRCTDGQGDADFLGSSIQCTHTREDARGPCSTIKCTERSGGRSLSLFHDPVYGRSGGC
Homology
[Close]
BLAST of Lag0005424 vs. NCBI nr
Match: XP_022156071.1 (serine/threonine-protein phosphatase 7 long form homolog [Momordica charantia])

HSP 1 Score: 85.9 bits (211), Expect = 7.4e-13
Identity = 38/64 (59.38%), Postives = 47/64 (73.44%), Query Frame = 0 

Query: 40  MEDDITIGPYDPSVLHLQPNHRSELVWENVYYNAKHCRRHEAVLKRFSSPDPQIEPYLRA 99
           MED+ +IGPYD SVLHLQ +HRSELVW+  Y +  H RR EA + R + PDP+I+PYLR 
Sbjct: 1   MEDNNSIGPYDSSVLHLQASHRSELVWQTGYIDPSHYRRREATISRVTRPDPRIDPYLRQ 60

Query: 100 SEFY 104
             FY
Sbjct: 61  IGFY 64

[Close]
BLAST of Lag0005424 vs. NCBI nr
Match: XP_022149384.1 (serine/threonine-protein phosphatase 7 long form homolog [Momordica charantia])

HSP 1 Score: 81.6 bits (200), Expect = 1.4e-11
Identity = 38/64 (59.38%), Postives = 46/64 (71.88%), Query Frame = 0 

Query: 40  MEDDITIGPYDPSVLHLQPNHRSELVWENVYYNAKHCRRHEAVLKRFSSPDPQIEPYLRA 99
           MED+ + GPYD SVLHLQ + RSELVW+  Y +  HCRR EA + R + PDP I+PYLR 
Sbjct: 1   MEDNNSTGPYDSSVLHLQAS-RSELVWQTGYTDPLHCRRREAXISRVTRPDPHIDPYLRQ 60

Query: 100 SEFY 104
            EFY
Sbjct: 61  VEFY 63

[Close]
BLAST of Lag0005424 vs. NCBI nr
Match: XP_038906359.1 (serine/threonine-protein phosphatase 7 long form homolog [Benincasa hispida])

HSP 1 Score: 63.9 bits (154), Expect = 3.0e-06
Identity = 28/57 (49.12%), Postives = 38/57 (66.67%), Query Frame = 0 

Query: 47  GPYDPSVLHLQPNHRSELVWENVYYNAKHCRRHEAVLKRFSSPDPQIEPYLRASEFY 104
           GP +P++LHLQ  HRS+LVW +   N  HCRR EA+L R    DP++  YL+ S F+
Sbjct: 186 GPINPTILHLQSTHRSQLVWMDQSANCLHCRRREAILHRTIDLDPRMVLYLKQSGFW 242

[Close]
BLAST of Lag0005424 vs. NCBI nr
Match: XP_022152173.1 (serine/threonine-protein phosphatase 7 long form homolog isoform X1 [Momordica charantia])

HSP 1 Score: 63.5 bits (153), Expect = 3.9e-06
Identity = 28/57 (49.12%), Postives = 38/57 (66.67%), Query Frame = 0 

Query: 47  GPYDPSVLHLQPNHRSELVWENVYYNAKHCRRHEAVLKRFSSPDPQIEPYLRASEFY 104
           GP + ++LHLQP HRS+LVW +   N   CRR EA+L R  + D +I PYL+ S F+
Sbjct: 319 GPINSAILHLQPTHRSQLVWTDQSANCLQCRRREAILHRTINLDARIVPYLKQSGFW 375

[Close]
BLAST of Lag0005424 vs. NCBI nr
Match: XP_022152174.1 (uncharacterized protein LOC111019957 isoform X2 [Momordica charantia])

HSP 1 Score: 63.5 bits (153), Expect = 3.9e-06
Identity = 28/57 (49.12%), Postives = 38/57 (66.67%), Query Frame = 0 

Query: 47  GPYDPSVLHLQPNHRSELVWENVYYNAKHCRRHEAVLKRFSSPDPQIEPYLRASEFY 104
           GP + ++LHLQP HRS+LVW +   N   CRR EA+L R  + D +I PYL+ S F+
Sbjct: 319 GPINSAILHLQPTHRSQLVWTDQSANCLQCRRREAILHRTINLDARIVPYLKQSGFW 375

[Close]
BLAST of Lag0005424 vs. ExPASy TrEMBL
Match: A0A6J1DTQ9 (serine/threonine-protein phosphatase 7 long form homolog OS=Momordica charantia OX=3673 GN=LOC111023038 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 3.6e-13
Identity = 38/64 (59.38%), Postives = 47/64 (73.44%), Query Frame = 0 

Query: 40  MEDDITIGPYDPSVLHLQPNHRSELVWENVYYNAKHCRRHEAVLKRFSSPDPQIEPYLRA 99
           MED+ +IGPYD SVLHLQ +HRSELVW+  Y +  H RR EA + R + PDP+I+PYLR 
Sbjct: 1   MEDNNSIGPYDSSVLHLQASHRSELVWQTGYIDPSHYRRREATISRVTRPDPRIDPYLRQ 60

Query: 100 SEFY 104
             FY
Sbjct: 61  IGFY 64

[Close]
BLAST of Lag0005424 vs. ExPASy TrEMBL
Match: A0A6J1D6W5 (serine/threonine-protein phosphatase 7 long form homolog OS=Momordica charantia OX=3673 GN=LOC111017814 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 6.8e-12
Identity = 38/64 (59.38%), Postives = 46/64 (71.88%), Query Frame = 0 

Query: 40  MEDDITIGPYDPSVLHLQPNHRSELVWENVYYNAKHCRRHEAVLKRFSSPDPQIEPYLRA 99
           MED+ + GPYD SVLHLQ + RSELVW+  Y +  HCRR EA + R + PDP I+PYLR 
Sbjct: 1   MEDNNSTGPYDSSVLHLQAS-RSELVWQTGYTDPLHCRRREAXISRVTRPDPHIDPYLRQ 60

Query: 100 SEFY 104
            EFY
Sbjct: 61  VEFY 63

[Close]
BLAST of Lag0005424 vs. ExPASy TrEMBL
Match: A0A6J1DE57 (serine/threonine-protein phosphatase 7 long form homolog isoform X1 OS=Momordica charantia OX=3673 GN=LOC111019957 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.9e-06
Identity = 28/57 (49.12%), Postives = 38/57 (66.67%), Query Frame = 0 

Query: 47  GPYDPSVLHLQPNHRSELVWENVYYNAKHCRRHEAVLKRFSSPDPQIEPYLRASEFY 104
           GP + ++LHLQP HRS+LVW +   N   CRR EA+L R  + D +I PYL+ S F+
Sbjct: 319 GPINSAILHLQPTHRSQLVWTDQSANCLQCRRREAILHRTINLDARIVPYLKQSGFW 375

[Close]
BLAST of Lag0005424 vs. ExPASy TrEMBL
Match: A0A6J1DF94 (uncharacterized protein LOC111019957 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111019957 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.9e-06
Identity = 28/57 (49.12%), Postives = 38/57 (66.67%), Query Frame = 0 

Query: 47  GPYDPSVLHLQPNHRSELVWENVYYNAKHCRRHEAVLKRFSSPDPQIEPYLRASEFY 104
           GP + ++LHLQP HRS+LVW +   N   CRR EA+L R  + D +I PYL+ S F+
Sbjct: 319 GPINSAILHLQPTHRSQLVWTDQSANCLQCRRREAILHRTINLDARIVPYLKQSGFW 375

[Close]
BLAST of Lag0005424 vs. ExPASy TrEMBL
Match: A0A438E4V5 (Serine/threonine-protein phosphatase 7 long form-like OS=Vitis vinifera OX=29760 GN=MAIL3_185 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.4e-04
Identity = 27/57 (47.37%), Postives = 33/57 (57.89%), Query Frame = 0 

Query: 47  GPYDPSVLHLQPNHRSELVWENVYYNAKHCRRHEAVLKRFSSPDPQIEPYLRASEFY 104
           GP DP+VLH Q  HRS + W  V     HCRR EA+  R S  D +I P L+ + FY
Sbjct: 4   GPLDPTVLHGQATHRSSVAWTGVDSKELHCRRREAIFHRTSVLDGRIIPLLQQAGFY 60

The following BLAST results are available for this feature:
BLAST of Lag0005424 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022156071.17.4e-1359.38serine/threonine-protein phosphatase 7 long form homolog [Momordica charantia][more]
XP_022149384.11.4e-1159.38serine/threonine-protein phosphatase 7 long form homolog [Momordica charantia][more]
XP_038906359.13.0e-0649.12serine/threonine-protein phosphatase 7 long form homolog [Benincasa hispida][more]
XP_022152173.13.9e-0649.12serine/threonine-protein phosphatase 7 long form homolog isoform X1 [Momordica c... [more]
XP_022152174.13.9e-0649.12uncharacterized protein LOC111019957 isoform X2 [Momordica charantia][more]
BLAST of Lag0005424 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Lag0005424 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DTQ93.6e-1359.38serine/threonine-protein phosphatase 7 long form homolog OS=Momordica charantia ... [more]
A0A6J1D6W56.8e-1259.38serine/threonine-protein phosphatase 7 long form homolog OS=Momordica charantia ... [more]
A0A6J1DE571.9e-0649.12serine/threonine-protein phosphatase 7 long form homolog isoform X1 OS=Momordica... [more]
A0A6J1DF941.9e-0649.12uncharacterized protein LOC111019957 isoform X2 OS=Momordica charantia OX=3673 G... [more]
A0A438E4V51.4e-0447.37Serine/threonine-protein phosphatase 7 long form-like OS=Vitis vinifera OX=29760... [more]
BLAST of Lag0005424 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0005424.1Lag0005424.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0048507 meristem development