Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGCGCCGTTATGCTGCCGAAATTTTCGGTGCTCACGGTTTGTTTTGGTCTAGGAGTTAGTAATGTCGCAGGGTTAGCTTTTAAAATCTCGGGTTTTTTAAGTTCAAGGCCTGTATATACACAAATCTAATATTTCAAGGCCTAAACTCATAATTTAATCTAAGGTGAACTCGTGCCCCGCCTGGCATCGAGTTCTGAGGTGGATGCCTTTGTTTGTTTTGGAAGGATAGTTTGGAGGTGGTTCTGAGATCTATGAGCAAGTTCCATATTGATGCTGTGATAAAGGAAGCAAAGCGGCATTGGAGATTTACGGGGTTCTATGGAGATCCGGAGGTGAGTAGTAGGTGTCACTCATGGAACTTGTTGTGGAGGCTTCGTAGTTGTGATTCCTTGTCGTGGTTGGTGGGTGGTGATTTTAATGAGTTGCTTAGTCAGAATGAGAAGGTGGGTGGGAATTTGCGTAGCCAGACCTAGATGCAATTCTTCAGGGATGCAGTTGATGATTGTGATCGTGTGGACATGGCCTTCAAGGGTTTTCCTTTCACTTGGTACAAAACGAAAGATAGAAGGATGGTGGTACAGGAGAGGTTGGATAGAGGTTTGTGCAACCTAGAATTTTATTCCTTATTCCCCTTTGGACATGTCCAGCATCTGGACTTTCATCTGTCTGATCATTGTCCTATTTTGATTGAGGCAAATAGTTTCAGGGTGCAGAGGGGAAGAGGGAGAGATAAATACTGCTTCAGGTTTGAAGAGGTGTGGACTCAGTTTGAGGATTGCATGGAGGTGGTGGAAAGGGGATGGGGCCTGCCAGTTCAGAGGTCAACAGGGGAGCAGGAGGGTGTAGCTAATGTTTGGAGGGCTCAAGTAAATAAATGCTCAGAGGAGCTTTCCAAATGGGGGAAAGGGAAGAAAGAGAGTTATGCACACAAAATCTCTCTTGCACGCTAGCAGGTGCACCAGGAGGTGGTGAGCGGTGGGGAGGTGAGTGAAGCTAGAGGCCGTTTGGAGAGGTTGTTGGGAGAAGAGGAGATCTACTGGAGACAGAGGTCCAGAGTAGACTGGATGTAG
mRNA sequence
ATGTGCGCCGTTATGCTGCCGAAATTTTCGGTGCTCACGGATAGTTTGGAGGTGGTTCTGAGATCTATGAGCAAGTTCCATATTGATGCTGTGATAAAGGAAGCAAAGCGGCATTGGAGATTTACGGGGTTCTATGGAGATCCGGAGGTGAGTAGTAGGTGTCACTCATGGAACTTGTTGTGGAGGCTTCGTAGTTGTGATTCCTTGTCGTGGTTGGTGGGTGGTGATTTTAATGAGTTGCTTAGTCAGAATGAGAAGCATCTGGACTTTCATCTGTCTGATCATTGTCCTATTTTGATTGAGGCAAATAGTTTCAGGGTGCAGAGGGGAAGAGGGAGAGATAAATACTGCTTCAGGTTTGAAGAGGTGTGGACTCAGTTTGAGGATTGCATGGAGGTGGTGGAAAGGGGATGGGGCCTGCCAGTTCAGAGGTCAACAGGGGAGCAGGAGGGTGTAGCTAATGTTTGGAGGGCTCAAGTGCACCAGGAGGTGGTGAGCGGTGGGGAGGTGAGTGAAGCTAGAGGCCGTTTGGAGAGGTTGTTGGGAGAAGAGGAGATCTACTGGAGACAGAGGTCCAGAGTAGACTGGATGTAG
Coding sequence (CDS)
ATGTGCGCCGTTATGCTGCCGAAATTTTCGGTGCTCACGGATAGTTTGGAGGTGGTTCTGAGATCTATGAGCAAGTTCCATATTGATGCTGTGATAAAGGAAGCAAAGCGGCATTGGAGATTTACGGGGTTCTATGGAGATCCGGAGGTGAGTAGTAGGTGTCACTCATGGAACTTGTTGTGGAGGCTTCGTAGTTGTGATTCCTTGTCGTGGTTGGTGGGTGGTGATTTTAATGAGTTGCTTAGTCAGAATGAGAAGCATCTGGACTTTCATCTGTCTGATCATTGTCCTATTTTGATTGAGGCAAATAGTTTCAGGGTGCAGAGGGGAAGAGGGAGAGATAAATACTGCTTCAGGTTTGAAGAGGTGTGGACTCAGTTTGAGGATTGCATGGAGGTGGTGGAAAGGGGATGGGGCCTGCCAGTTCAGAGGTCAACAGGGGAGCAGGAGGGTGTAGCTAATGTTTGGAGGGCTCAAGTGCACCAGGAGGTGGTGAGCGGTGGGGAGGTGAGTGAAGCTAGAGGCCGTTTGGAGAGGTTGTTGGGAGAAGAGGAGATCTACTGGAGACAGAGGTCCAGAGTAGACTGGATGTAG
Protein sequence
MCAVMLPKFSVLTDSLEVVLRSMSKFHIDAVIKEAKRHWRFTGFYGDPEVSSRCHSWNLLWRLRSCDSLSWLVGGDFNELLSQNEKHLDFHLSDHCPILIEANSFRVQRGRGRDKYCFRFEEVWTQFEDCMEVVERGWGLPVQRSTGEQEGVANVWRAQVHQEVVSGGEVSEARGRLERLLGEEEIYWRQRSRVDWM
Homology
BLAST of Lag0005421 vs. NCBI nr
Match:
XP_024164679.1 (uncharacterized protein LOC112171781 [Rosa chinensis])
HSP 1 Score: 109.8 bits (273), Expect = 2.8e-20
Identity = 72/209 (34.45%), Postives = 100/209 (47.85%), Query Frame = 0
Query: 14 DSLEVVLRSMSKFHIDAVIKE--AKRHWRFTGFYGDPEVSSRCHSWNLLWRLRSCDSLSW 73
D + V L++ S+ HID VI E + WRFTG YG P+ R +WNLL +L +L W
Sbjct: 84 DDVSVALQTYSESHIDVVIGEPGSPNCWRFTGLYGHPKTEERYQTWNLLRQLSLQGNLPW 143
Query: 74 LV------GGD--------FNELL-------SQNEKHLDFHLSDHCPILIEANSFRVQRG 133
+V GG+ F L + KHLD SDH PIL+E +
Sbjct: 144 VVYLEGIRGGEEVKIRLDRFTSSLQCKDLFPASRVKHLDPCKSDHVPILLEVRVHNAK-- 203
Query: 134 RGRDKYCFRFEEVWTQFEDCMEVVERGWGLPVQRSTGEQEGVANVWRAQVHQEVVSGGEV 193
R + K CF+FEE W + C EVVERGW + R+ +A + A V
Sbjct: 204 RKKRKRCFKFEEFWLLEDKCREVVERGWEIAKTRAL-----LARFFDAPSSPNAADSLSV 263
Query: 194 SE--ARGRLERLLGEEEIYWRQRSRVDWM 198
+L LL +E ++WRQR++V W+
Sbjct: 264 DRLLLESKLNDLLNQEHVFWRQRAKVFWL 285
BLAST of Lag0005421 vs. NCBI nr
Match:
PON56647.1 (Endonuclease/exonuclease/phosphatase [Trema orientale])
HSP 1 Score: 103.2 bits (256), Expect = 2.6e-18
Identity = 80/259 (30.89%), Postives = 105/259 (40.54%), Query Frame = 0
Query: 18 VVLRSMSKFHIDA-VIKEAKRHWRFTGFYGDPEVSSRCHSWNLLWRLRSCDSLSWLVGGD 77
V + S S HIDA V+ E K HWRFTGFYG P S R SW+LL RL SL W+ GGD
Sbjct: 10 VTIHSFSNGHIDAPVVTEEKVHWRFTGFYGHPSQSKRKFSWDLLRRLNGLFSLPWVCGGD 69
Query: 78 FNELLSQNE---------------------------------------------KHLDFH 137
FNE+L +E KHLDF
Sbjct: 70 FNEILCLSEKVRGSEEGLMHTWTNKRDGLANIQEQLDRYVYNDEWRTLFPNASVKHLDFF 129
Query: 138 LSDHCPILIEANSFRVQRGRGRDKYCFRFEEVWTQFEDCMEVVERGWGLPVQRSTGEQ-E 197
LSDH P+++ + + G G FR E W D +VV++ W V +
Sbjct: 130 LSDHRPVVLSISKQTLSYGSGERP--FRLEPFWVNETDFNDVVQQSWQNSVVNDRRKSFS 189
BLAST of Lag0005421 vs. NCBI nr
Match:
XP_038718167.1 (uncharacterized protein LOC120011171 [Tripterygium wilfordii])
HSP 1 Score: 103.2 bits (256), Expect = 2.6e-18
Identity = 80/273 (29.30%), Postives = 106/273 (38.83%), Query Frame = 0
Query: 18 VVLRSMSKFHIDA-VIKEAKRH-WRFTGFYGDPEVSSRCHSWNLLWRLRSCDSLSWLVGG 77
V L S SK HID V+ E H W TGFYG+P S RCHSW+LL L+ C L WLV G
Sbjct: 153 VHLLSFSKNHIDGQVVCEGLDHQWCITGFYGNPVQSQRCHSWSLLRHLKGCSDLPWLVLG 212
Query: 78 DFNELLSQNEK------------------------------------------------- 137
DFNE+L EK
Sbjct: 213 DFNEILDSAEKLGGRARGVHAMRDFQSCLEACCLEDLGYVGGKYTWCNNRREGVIFERLD 272
Query: 138 ------------------HLDFHLSDHCPILIEANSFRVQRGRGRDKYCFRFEEVWTQFE 197
H +SDH PI+++ + V GR FRFEE+WT+ E
Sbjct: 273 RAVVDGNWRSLFPSAIVNHDVATVSDHIPIVVDCLPYDV---GGRTNKRFRFEEMWTRHE 332
BLAST of Lag0005421 vs. NCBI nr
Match:
CAB4268750.1 (unnamed protein product [Prunus armeniaca])
HSP 1 Score: 102.8 bits (255), Expect = 3.4e-18
Identity = 81/282 (28.72%), Postives = 107/282 (37.94%), Query Frame = 0
Query: 13 TDSLEVVLRSMSKFHIDAVIK--EAKRHWRFTGFYGDPEVSSRCHSWNLLWRLRSCDSLS 72
TD L + LRS S HID ++ + WRFTGFYG P + R SW+LL RL + +SL
Sbjct: 3 TDELAISLRSASNNHIDTEVEVLGVQGRWRFTGFYGCPVTAERHRSWDLLIRLGATNSLP 62
Query: 73 WLVGGDFNELLSQNEK-------------------------------------------- 132
WL GDFNE+L+ +EK
Sbjct: 63 WLCCGDFNEILTADEKTGGRTRGARQMQGFRHAVDECGFKDLGFSGPKFTWWRNSPEEIR 122
Query: 133 ----------------------HLDFHLSDHCPILIEANSFRVQRGRGRDKYCFRFEEVW 192
HL+ SDH PI I + + R R+ FRFEE+W
Sbjct: 123 IRLDRALATTDWCTRFPGTKVLHLNPTKSDHLPIRITISKRMLSNTRHRN--LFRFEEMW 182
Query: 193 TQFEDCMEVVERGWGLPVQ----------------RSTGEQEGVANVWRAQVHQEVVSGG 198
Q E+CME + W P R G G+ Q+ G
Sbjct: 183 VQHENCMETIREEWLQPESGSAPRAVTEKLKRTRLRLLGWSRGIFGSLPHQIKSIQTKLG 242
BLAST of Lag0005421 vs. NCBI nr
Match:
XP_042988708.1 (uncharacterized protein LOC122316242 [Carya illinoinensis])
HSP 1 Score: 101.7 bits (252), Expect = 7.5e-18
Identity = 68/209 (32.54%), Postives = 100/209 (47.85%), Query Frame = 0
Query: 20 LRSMSKFHIDAVI--KEAKRHWRFTGFYGDPEVSSRCHSWNLLWRLRSCDSLSWLVGGDF 79
++S SK HIDA I +EA R W FTG YG E+ R +WN++ L+ D WL+ GDF
Sbjct: 37 IQSFSKNHIDAQIYNEEADRQWHFTGVYGRLEIELRQETWNMIKTLKGVDIEPWLICGDF 96
Query: 80 NELLSQNEKHLDFHLSDHCPILIEANSFRVQRGRGRDKYCFRFEEVWTQFEDCMEVVERG 139
NE+L EK SDH P++ ++S + + RG+ FRFE +W + EDC V+
Sbjct: 97 NEVLCWQEKRGGKAYSDHLPVICYSSSEK-RSTRGK---LFRFEAMWAEDEDCERVIADS 156
Query: 140 WGL-----PVQRSTGEQEGVA----------------NVWRAQVHQEVVSGGEV------ 198
W P+ R + E + + +A+ H + V +
Sbjct: 157 WKCDIGDNPMNRFKTQVEACSQNLTHWNKIKFGRVQKKIQQARGHLQQVQDRDPYHIQVE 216
BLAST of Lag0005421 vs. ExPASy TrEMBL
Match:
A0A2N9F647 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS14298 PE=4 SV=1)
HSP 1 Score: 125.6 bits (314), Expect = 2.4e-25
Identity = 76/210 (36.19%), Postives = 103/210 (49.05%), Query Frame = 0
Query: 14 DSLEVVLRSMSKFHIDA-VIKEAKRHWRFTGFYGDPEVSSRCHSWNLLWRLRSCDSLSWL 73
DS+++ ++S SK HID V WR TGFYGDP+ + R HSW LL RL+ + WL
Sbjct: 562 DSVDIQIQSYSKHHIDCWVDNHTGESWRLTGFYGDPDTACRHHSWELLRRLKGMSNRMWL 621
Query: 74 VGGDFNELLSQNEK--------------------HLDFHLSDHCPILIEANSFRVQRGRG 133
V GDFNE+ S +EK H F SDH +L+ ++ G
Sbjct: 622 VMGDFNEITSSDEKQDRGVATTQWMDLFPGATIQHFVFAFSDHLGLLLNTDTV-AHGGHQ 681
Query: 134 RDKYCFRFEEVWTQFEDCMEVVERGWGLPVQRSTGEQEGVANVWRAQVHQEVVSGGEVSE 193
R K F FE W + E C EV+ + W + R + +++ V G V++
Sbjct: 682 RKKRRFHFEHAWLREEGCEEVIAQAWEVQHARRLPKLIAEKQARLKEIYGMV--GNHVNK 741
Query: 194 ARGR-----LERLLGEEEIYWRQRSRVDWM 198
GR L LL +EEIYWRQRSRV W+
Sbjct: 742 QEGRDLRRDLRFLLAKEEIYWRQRSRVAWL 768
BLAST of Lag0005421 vs. ExPASy TrEMBL
Match:
A0A2N9IT86 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS55113 PE=4 SV=1)
HSP 1 Score: 112.5 bits (280), Expect = 2.1e-21
Identity = 76/189 (40.21%), Postives = 92/189 (48.68%), Query Frame = 0
Query: 17 EVVLR--SMSKFHIDAVIKEAKRH-WRFTGFYGDPEVSSRCHSWNLLWRLRSCDSLSWLV 76
EV LR S S HIDA++ E + WRFTGFYG PE R SWNLL RL L W
Sbjct: 122 EVKLRVYSFSHSHIDAIVNEHQPDAWRFTGFYGAPETHKREESWNLLRRLNVQFKLPWCC 181
Query: 77 GGDFNELLSQNEKHLDFHLSDH-----CPILIEANSFRVQRGRGRDKYCFRFEEVWTQFE 136
GDFNEL+ EKH + S+ +L E ++ K FRFEEVWT +
Sbjct: 182 MGDFNELVRIEEKHGRHNRSERQMQLFRDVLEECGFMDLEPVTLSSKKPFRFEEVWTSDQ 241
Query: 137 DCMEVVERGWGLPVQRSTGEQEGVANVWRAQVHQEVVSGGEVSEARGRLERLLGEEEIYW 196
C V+E W V GV H+ VS+ RG L LL +EE W
Sbjct: 242 GCEAVIEASWKKDV-------VGVPMYTGRDHHR-------VSKLRGELHSLLAKEERLW 296
Query: 197 RQRSRVDWM 198
RQRSR +W+
Sbjct: 302 RQRSRAEWL 296
BLAST of Lag0005421 vs. ExPASy TrEMBL
Match:
A0A2N9FYH3 (CCHC-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS20224 PE=4 SV=1)
HSP 1 Score: 111.3 bits (277), Expect = 4.6e-21
Identity = 79/257 (30.74%), Postives = 111/257 (43.19%), Query Frame = 0
Query: 14 DSLEVVLRSMSKFHIDA-VIKEAKRHWRFTGFYGDPEVSSRCHSWNLLWRLRSCDSLSWL 73
DS+++ ++S SK HID V WRFTGFYGDP+ + R HSW LL RL+ + WL
Sbjct: 521 DSVDIQIQSYSKHHIDCWVDNHTGESWRFTGFYGDPDTACRHHSWELLRRLKGMSNRMWL 580
Query: 74 VGGDFNELLSQNEK-------------------------------------------HLD 133
V GDFNE+ S +EK H
Sbjct: 581 VMGDFNEITSSDEKQGFHGYEFTWTNNRNQGECVDERLDRGVATTQWMDLFPGATIQHFV 640
Query: 134 FHLSDHCPILIEANSFRVQRGRGRDKYCFRFEEVWTQFEDCMEVVERGWGLP-------- 193
F SDH +L+ ++ G R K F FE W + E C EV+ + W +
Sbjct: 641 FAFSDHLGLLLNTDTV-AHGGHQRKKRRFHFEHAWLREEGCEEVIAQAWEVQHVGTHMFR 700
Query: 194 -VQRSTGEQEGVANVWRAQVH-------------QEV--VSGGEVSEARGR-----LERL 198
VQ+ + + + ++Q +E+ +G V++ GR L L
Sbjct: 701 LVQKIKQCRMALLSWSKSQARRLPKLIAEKQARLKEIYGTAGNHVNKQEGRDLRRDLRCL 760
BLAST of Lag0005421 vs. ExPASy TrEMBL
Match:
A0A2N9GZ45 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS32710 PE=4 SV=1)
HSP 1 Score: 108.6 bits (270), Expect = 3.0e-20
Identity = 71/215 (33.02%), Postives = 102/215 (47.44%), Query Frame = 0
Query: 14 DSLEVVLRSMSKFHIDA--VIKEAKRHWRFTGFYGDPEVSSRCHSWNLLWRLRSCDSLSW 73
D ++VV+ + S+ HIDA V K + + TGF G+PE R SW LL L S S W
Sbjct: 22 DQVDVVVSTYSRNHIDARVVKKSSGTGFHVTGFSGNPETHKRKESWALLKHLSSLSSEPW 81
Query: 74 LVGGDFNELLSQNEKH--------------------LDFHLSDHCPILIEANSFRVQRGR 133
+ GDFNE+L NE+ ++F + DHCP+++ + R R
Sbjct: 82 ICMGDFNEILDNNERSGRCSRPGWPIEDFRVVVVHIVNFMIWDHCPMVLSLPDSQSTRKR 141
Query: 134 GRDKYCFRFEEVWTQFEDCMEVVERGW------GLPVQRSTGEQEGVAN---VWRAQVHQ 193
K FRF+ +WT E+C EV+ W G P+ + + +G W ++ Q
Sbjct: 142 ---KQVFRFKAMWTMEEECKEVIANAWNSEVVEGRPMFQVVEKLKGCRGSLIAWNIRLLQ 201
Query: 194 EVVSGGEVSEARGRLERLLGEEEIYWRQRSRVDWM 198
+ L LL +EE+YWRQRSRV WM
Sbjct: 202 D------------ELNVLLEKEEVYWRQRSRVAWM 221
BLAST of Lag0005421 vs. ExPASy TrEMBL
Match:
A0A803Q6L7 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)
HSP 1 Score: 104.0 bits (258), Expect = 7.4e-19
Identity = 73/242 (30.17%), Postives = 104/242 (42.98%), Query Frame = 0
Query: 22 SMSKFHIDAVI-KEAKRHWRFTGFYGDPEVSSRCHSWNLLWRLRSCDSLSWLVGGDFNEL 81
S S FHID+ I KE + WRFTGFYGDP+ + RC SW LL R+ S W++GGDFNE+
Sbjct: 463 SFSSFHIDSFIRKEEDQGWRFTGFYGDPDPNQRCESWKLLTRIGRMYSGPWVIGGDFNEI 522
Query: 82 LSQNEK----------------------------------HLDFHLSDHCPILIEA---N 141
L + EK HL+ SDHCP+L++
Sbjct: 523 LRRKEKMGGQPKPGHLITNFRKALDGSNLKEVDYEAAKVFHLERVNSDHCPLLLQCLYQT 582
Query: 142 SFRVQRGRGRDKYCFRFEEVWTQFEDCMEVVERGWGLPVQRSTGEQ--------EGVANV 198
+ V R + F FE W + E C ++V W +T + N
Sbjct: 583 NEDVTDSRWHSR--FHFESAWAEEEKCSQIVTENWNRRTSSTTTHELKKKLTDCGNALNQ 642
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A2N9F647 | 2.4e-25 | 36.19 | Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS14298 PE=4 SV=1 | [more] |
A0A2N9IT86 | 2.1e-21 | 40.21 | Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS55113 PE=4 SV=1 | [more] |
A0A2N9FYH3 | 4.6e-21 | 30.74 | CCHC-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS2022... | [more] |
A0A2N9GZ45 | 3.0e-20 | 33.02 | Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS32710 PE=4 SV=1 | [more] |
A0A803Q6L7 | 7.4e-19 | 30.17 | Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1 | [more] |