Lag0005413 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0005413
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr6: 17096491 .. 17097705 (-)
RNA-Seq ExpressionLag0005413
SyntenyLag0005413
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACGCCTCTCCTGCAGCTCCTCCTACTGTCTCACCCGCCAAGCCGAAGGCCAAATCACCCAAGGATGCATCTCCTAAAAATCCATTCCCCGAAGTATTCAGAGATGTAAATTTCCAAGAAAGATGAAGAGCATGAGAAAAAGAGATTTTCTCAACGATAAGGGATTCTCTAACAGAGTGGGAGCACTGCCAGAGTTCGTAAGTAGAGTTATCTCACAGTATAAGTGGCAGGAGTTCTATGCTCACCCTCAGGAGGCTGTAGTGCCTTTAGTTTGTGAATTTTTCGCCTGCTTGAGGGAGGAAAGCATAAGTATGGCAGCGGTGAGAGGCAAAATGGTCAGCTTCTCTTCAGTGGACATCAACAGGGTATACAAAATCAAGGCACCCCTACATCCACGAGGGAATGATATCATCAGGAACCTCTCGGCCAAGCAGATGAAAGAAGTACTGAAATTACTTGCCAACAAGGGACTTTAGTGGAAAGAATCCCAAACGAAGGTGAAGAATTTAGTGCCAAGCGACCTAAAGCCAGAATCGGCAGTGCGGCTTCACTTTTGAATAACCGTTTGATGCCAACCACCCACGATAGCACCATCTCAGTAGATAAAGTTATGCTCCTCTACTGTATTATGAAGGGGTTGGAGATCAATATTGGAGCATTATCAAGTAGGAGATTCTAGCATGTGGAAGGAAAAGAGCAGGAAAGCTTTTCTTTGGATCGCTTATCACCCAACTTTGTCAATGGTGAAGATAGTTCCGAGCAAGGACGAGGAGCGTCATTTCTTCAAGCCTACCATTGACTTGTCCTTGATTGGGAAGCTTCAACAGAATAACCTCCAAAGGAAAGATAAAGCCTCCACATCTCAAGCCACTCCACCATCAGGGCTAACATGGCGACTCCATCCCAGCACACTCCTTTTAAAGAGCCCTGACCGTCATCTGTAGCCCTAAGCATTGCCTACCGACAGCTAGATCAAATCAGGGACAACCTAAAGACTTATTGGGCATATGCAAAGGAGAGGATGAAGCCATTAGAGAGTTTTATCTCTCTATCGCCCCGAGTATTGCTCCGGTCTTTCCGATTTCCCTCGATCGATGTTGCCTCAGAAGCAAGGATTCTGATGAAGAAGAAGATGAAAATGTGATGAAGATGATGAAGAGAAAAAGAGTTCCTCAACGAGGACTAGGTGAGTTTTCTGACCCCTTTGCATGA

mRNA sequence

ATGGACGCCTCTCCTGCAGCTCCTCCTACTGTCTCACCCGCCAAGCCGAAGGCCAAATCACCCAAGGATGCATCTCCTAAAAATCCATTCCCCGAAGTATTCAGAGATGAGTTCTATGCTCACCCTCAGGAGGCTGTAGTGCCTTTAGTTTGTGAATTTTTCGCCTGCTTGAGGGAGGAAAGCATAAGTATGGCAGCGGTGAGAGGCAAAATGGAACCTCTCGGCCAAGCAGATGAAAGAAGTACTGAAATTACTTGCCAACAAGGGACTTTAGTGGAAAGAATCCCAAACGAAGGTGAAGAATTTAGTGCCAAGCGACCTAAAGCCAGAATCGGCAGTGCGGCTTCACTTTTGAATAACCGTTTGATGCCAACCACCCACGATAGCACCATCTCAGTAGATAAAGTTATGCTCCTCTACTGTATTATGAAGGGGTTGGAGATCAATATTGGAGCATTATCAATTCCGAGCAAGGACGAGGAGCGTCATTTCTTCAAGCCTACCATTGACTTGTCCTTGATTGGGAAGCTTCAACAGAATAACCTCCAAAGGAAAGATAAAGCCTCCACATCTCAAGCCACTCCACCATCAGGGCTAACATGGCGACTCCATCCCAGCACACTCCTTTTAAAGAGCCCTGACCGAGAGGATGAAGCCATTAGAGAGTTTTATCTCTCTATCGCCCCGAGTATTGCTCCGGTCTTTCCGATTTCCCTCGATCGATGTTGCCTCAGAAGCAAGGATTCTGATGAAGAAGAAGATGAAAATGTGATGAAGATGATGAAGAGAAAAAGAGTTCCTCAACGAGGACTAGGTGAGTTTTCTGACCCCTTTGCATGA

Coding sequence (CDS)

ATGGACGCCTCTCCTGCAGCTCCTCCTACTGTCTCACCCGCCAAGCCGAAGGCCAAATCACCCAAGGATGCATCTCCTAAAAATCCATTCCCCGAAGTATTCAGAGATGAGTTCTATGCTCACCCTCAGGAGGCTGTAGTGCCTTTAGTTTGTGAATTTTTCGCCTGCTTGAGGGAGGAAAGCATAAGTATGGCAGCGGTGAGAGGCAAAATGGAACCTCTCGGCCAAGCAGATGAAAGAAGTACTGAAATTACTTGCCAACAAGGGACTTTAGTGGAAAGAATCCCAAACGAAGGTGAAGAATTTAGTGCCAAGCGACCTAAAGCCAGAATCGGCAGTGCGGCTTCACTTTTGAATAACCGTTTGATGCCAACCACCCACGATAGCACCATCTCAGTAGATAAAGTTATGCTCCTCTACTGTATTATGAAGGGGTTGGAGATCAATATTGGAGCATTATCAATTCCGAGCAAGGACGAGGAGCGTCATTTCTTCAAGCCTACCATTGACTTGTCCTTGATTGGGAAGCTTCAACAGAATAACCTCCAAAGGAAAGATAAAGCCTCCACATCTCAAGCCACTCCACCATCAGGGCTAACATGGCGACTCCATCCCAGCACACTCCTTTTAAAGAGCCCTGACCGAGAGGATGAAGCCATTAGAGAGTTTTATCTCTCTATCGCCCCGAGTATTGCTCCGGTCTTTCCGATTTCCCTCGATCGATGTTGCCTCAGAAGCAAGGATTCTGATGAAGAAGAAGATGAAAATGTGATGAAGATGATGAAGAGAAAAAGAGTTCCTCAACGAGGACTAGGTGAGTTTTCTGACCCCTTTGCATGA

Protein sequence

MDASPAAPPTVSPAKPKAKSPKDASPKNPFPEVFRDEFYAHPQEAVVPLVCEFFACLREESISMAAVRGKMEPLGQADERSTEITCQQGTLVERIPNEGEEFSAKRPKARIGSAASLLNNRLMPTTHDSTISVDKVMLLYCIMKGLEINIGALSIPSKDEERHFFKPTIDLSLIGKLQQNNLQRKDKASTSQATPPSGLTWRLHPSTLLLKSPDREDEAIREFYLSIAPSIAPVFPISLDRCCLRSKDSDEEEDENVMKMMKRKRVPQRGLGEFSDPFA
Homology
[Close]
BLAST of Lag0005413 vs. NCBI nr
Match: PON46472.1 (hypothetical protein PanWU01x14_251180, partial [Parasponia andersonii])

HSP 1 Score: 59.7 bits (143), Expect = 4.7e-05
Identity = 44/145 (30.34%), Postives = 71/145 (48.97%), Query Frame = 0 

Query: 37  EFYAHPQEAVVPLVCEFFACLREESISMAAVRGKM---------------EPLGQADERS 96
           +F AHP++ +VPLV EF+A L +   +   VRG                 +P+ +  E  
Sbjct: 74  QFCAHPEDPIVPLVREFYANLTDPEENTVYVRGVQVSWSEEAINAVFGLGDPVDEHSEFI 133

Query: 97  TEITCQQ-GTLVERIPNEGEEF------------SAKRPKARIGSAASLLNNRLMPTTHD 154
             IT Q   T++E +   G E+            SA  P A++      L +RL+PTTH 
Sbjct: 134 QNITQQDLITVLETVAAAGAEWNVSAQGAYTCIRSALTPAAKVW--YHFLKSRLLPTTHG 193

[Close]
BLAST of Lag0005413 vs. ExPASy TrEMBL
Match: A0A2P5BCG4 (Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x14_251180 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.3e-05
Identity = 44/145 (30.34%), Postives = 71/145 (48.97%), Query Frame = 0 

Query: 37  EFYAHPQEAVVPLVCEFFACLREESISMAAVRGKM---------------EPLGQADERS 96
           +F AHP++ +VPLV EF+A L +   +   VRG                 +P+ +  E  
Sbjct: 74  QFCAHPEDPIVPLVREFYANLTDPEENTVYVRGVQVSWSEEAINAVFGLGDPVDEHSEFI 133

Query: 97  TEITCQQ-GTLVERIPNEGEEF------------SAKRPKARIGSAASLLNNRLMPTTHD 154
             IT Q   T++E +   G E+            SA  P A++      L +RL+PTTH 
Sbjct: 134 QNITQQDLITVLETVAAAGAEWNVSAQGAYTCIRSALTPAAKVW--YHFLKSRLLPTTHG 193

[Close]
BLAST of Lag0005413 vs. ExPASy TrEMBL
Match: A0A2P5AXB5 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_291710 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 5.6e-04
Identity = 42/142 (29.58%), Postives = 71/142 (50.00%), Query Frame = 0 

Query: 38  FYAHPQEAVVPLVCEFFACLR---------------EESISMAAVRGKMEPLGQADERST 97
           F A+P++ ++PLVCEF+A +                EE+I+  A+ G  +P+ +  E   
Sbjct: 19  FCAYPEDPIMPLVCEFYANITDPKEGTMYAEVFKFPEEAIN--AIFGLRDPVDEHSEFVE 78

Query: 98  EIT-CQQGTLVERIPNEGEEFSAKRPKARIGSAASL----------LNNRLMPTTHDSTI 154
           E+T  +  T++E +     E++     A     +SL          L + L+PTTH  T+
Sbjct: 79  EVTEPKLLTVLETVAVTEAEWNVSSLGAYTCLQSSLNLATKIWYHFLKSYLLPTTHGKTV 138

[Close]
BLAST of Lag0005413 vs. ExPASy TrEMBL
Match: A0A2P5AGA5 (Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x14_335450 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 9.5e-04
Identity = 45/147 (30.61%), Postives = 72/147 (48.98%), Query Frame = 0 

Query: 37  EFYAHPQEAVVPLVCEFFACL-----------------REESISMAAVRGKMEPLGQADE 96
           +F AHP++ +VPLV EF+A L                  EE+I+  AV G  +P+ +  E
Sbjct: 65  QFCAHPEDPIVPLVREFYANLTDPVENTVYVRGVQVSWSEEAIN--AVFGLGDPVDEHSE 124

Query: 97  RSTEITCQQ-GTLVERIPNEGEEF------------SAKRPKARIGSAASLLNNRLMPTT 154
               IT     T++E +   G E+            SA  P A++      L + L+PTT
Sbjct: 125 FIENITEHDLITVLETVAVAGAEWNVSAQGAYTCIRSALTPAAKVW--FHFLKSHLLPTT 184

The following BLAST results are available for this feature:
BLAST of Lag0005413 vs. NCBI nr
Match NameE-valueIdentityDescription
PON46472.14.7e-0530.34hypothetical protein PanWU01x14_251180, partial [Parasponia andersonii][more]
BLAST of Lag0005413 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Lag0005413 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A2P5BCG42.3e-0530.34Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x1... [more]
A0A2P5AXB55.6e-0429.58Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_291710 PE... [more]
A0A2P5AGA59.5e-0430.61Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x1... [more]
BLAST of Lag0005413 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 248..270
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..29
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 248..279

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0005413.1Lag0005413.1mRNA