Lag0005375 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0005375
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Transposon Ty3-I Gag-Pol polyprotein
Location	chr6: 15474461 .. 15474820 (-)
RNA-Seq Expression	Lag0005375
Synteny	Lag0005375

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGAGAGAGGAGCTAGGGGAGTGAAGCTTAAAATCCCACCAATTCATGGGAGGTCTGATCCGGAGGAGCATTTGCAATATGAGAGCAAAATTGAGCTTGTATTTAATTGCAACAATTTTAGTGAAGAAAAAAAGTTGAAACTTGCTGTGGCTGAATTTTGTGATTATGCCAACAACATTTGGTGGACATCTTTGGAATCAGAATGGAGGAGAAACTATGAGGATCCAATTGAAACATGGGAGGAATTAAAGGCCTTAATGAGGAAGAGGTACATTCCTAAGCATTATTCCCGAGAACTCAAGCAAAAGCTCTATGCTTTGCAACAAGGATCCAAAAGTGTGGAAGATTTATTTTGA

mRNA sequence

ATGGAAGAGAGAGGAGCTAGGGGAGTGAAGCTTAAAATCCCACCAATTCATGGGAGGTCTGATCCGGAGGAGCATTTGCAATATGAGAGCAAAATTGAGCTTGTATTTAATTGCAACAATTTTAGTGAAGAAAAAAAGTTGAAACTTGCTGTGGCTGAATTTTGTGATTATGCCAACAACATTTGGTGGACATCTTTGGAATCAGAATGGAGGAGAAACTATGAGGATCCAATTGAAACATGGGAGGAATTAAAGGCCTTAATGAGGAAGAGGTACATTCCTAAGCATTATTCCCGAGAACTCAAGCAAAAGCTCTATGCTTTGCAACAAGGATCCAAAAGTGTGGAAGATTTATTTTGA

Coding sequence (CDS)

ATGGAAGAGAGAGGAGCTAGGGGAGTGAAGCTTAAAATCCCACCAATTCATGGGAGGTCTGATCCGGAGGAGCATTTGCAATATGAGAGCAAAATTGAGCTTGTATTTAATTGCAACAATTTTAGTGAAGAAAAAAAGTTGAAACTTGCTGTGGCTGAATTTTGTGATTATGCCAACAACATTTGGTGGACATCTTTGGAATCAGAATGGAGGAGAAACTATGAGGATCCAATTGAAACATGGGAGGAATTAAAGGCCTTAATGAGGAAGAGGTACATTCCTAAGCATTATTCCCGAGAACTCAAGCAAAAGCTCTATGCTTTGCAACAAGGATCCAAAAGTGTGGAAGATTTATTTTGA

Protein sequence

MEERGARGVKLKIPPIHGRSDPEEHLQYESKIELVFNCNNFSEEKKLKLAVAEFCDYANNIWWTSLESEWRRNYEDPIETWEELKALMRKRYIPKHYSRELKQKLYALQQGSKSVEDLF

Homology

[Close]

BLAST of Lag0005375 vs. NCBI nr
Match: XP_023521225.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111784949, partial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 198.0 bits (502), Expect = 4.7e-47
Identity = 95/118 (80.51%), Postives = 107/118 (90.68%), Query Frame = 0


Query: 2   EERGARGVKLKIPPIHGRSDPEEHLQYESKIELVFNCNNFSEEKKLKLAVAEFCDYANNI 61
           +E+G  GVKLKIP ++G SDPEE+LQYESKIE VF+CNNFS+E+KLKLAVAEFCDYA  I
Sbjct: 75  KEKGVGGVKLKIPTLYGGSDPEEYLQYESKIEHVFDCNNFSKERKLKLAVAEFCDYA-II 134

Query: 62  WWTSLESEWRRNYEDPIETWEELKALMRKRYIPKHYSRELKQKLYALQQGSKSVEDLF 120
           WWTSL+SEWRRNYE+PIETWEELK LMRKRYIPKHYSR LKQKLY LQQGSKSVE+ +
Sbjct: 135 WWTSLKSEWRRNYEEPIETWEELKTLMRKRYIPKHYSRVLKQKLYTLQQGSKSVEEYY 191

[Close]

BLAST of Lag0005375 vs. NCBI nr
Match: XP_023534142.1 (uncharacterized protein LOC111795765 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 197.2 bits (500), Expect = 8.0e-47
Identity = 95/117 (81.20%), Postives = 105/117 (89.74%), Query Frame = 0


Query: 3   ERGARGVKLKIPPIHGRSDPEEHLQYESKIELVFNCNNFSEEKKLKLAVAEFCDYANNIW 62
           E+G  GVKLKIP  +GRSDPEE+LQYESKIE VF+CNNFSEE+KLKLAVAEFCDYA  IW
Sbjct: 112 EKGVWGVKLKIPTFYGRSDPEEYLQYESKIEHVFDCNNFSEERKLKLAVAEFCDYA-IIW 171

Query: 63  WTSLESEWRRNYEDPIETWEELKALMRKRYIPKHYSRELKQKLYALQQGSKSVEDLF 120
           WT L+SEWRRNYE+PIETWEEL+ LMRKRYIPKHYSR LKQKLY LQQGSKSVE+ +
Sbjct: 172 WTYLKSEWRRNYEEPIETWEELRTLMRKRYIPKHYSRVLKQKLYTLQQGSKSVEEYY 227

[Close]

BLAST of Lag0005375 vs. NCBI nr
Match: XP_038888883.1 (uncharacterized protein LOC120078660 [Benincasa hispida])

HSP 1 Score: 172.9 bits (437), Expect = 1.6e-39
Identity = 83/118 (70.34%), Postives = 97/118 (82.20%), Query Frame = 0


Query: 2   EERGARGVKLKIPPIHGRSDPEEHLQYESKIELVFNCNNFSEEKKLKLAVAEFCDYANNI 61
           EE G  GVKL IP  HG  DP+ +LQYESKI+ VF C+NFSEE+K+KL VA+F DY  ++
Sbjct: 110 EETGIGGVKLAIPTFHGTMDPKGYLQYESKIKHVFYCHNFSEERKMKLVVAKFIDYV-SV 169

Query: 62  WWTSLESEWRRNYEDPIETWEELKALMRKRYIPKHYSRELKQKLYALQQGSKSVEDLF 120
           WWTSL+ EWRRNYE+ IETWEELKALMRK YIPKHY RELKQKLY+LQQGSK V+D +
Sbjct: 170 WWTSLKLEWRRNYEELIETWEELKALMRKMYIPKHYIRELKQKLYSLQQGSKGVDDYY 226

[Close]

BLAST of Lag0005375 vs. NCBI nr
Match: XP_022158198.1 (uncharacterized protein LOC111024735 [Momordica charantia])

HSP 1 Score: 172.6 bits (436), Expect = 2.1e-39
Identity = 85/94 (90.43%), Postives = 90/94 (95.74%), Query Frame = 0


Query: 26  LQYESKIELVFNCNNFSEEKKLKLAVAEFCDYANNIWWTSLESEWRRNYEDPIETWEELK 85
           LQYESKIE VF+CNNFSEE+KLKLAVAEFCDYA NIWWTSL+SE RRNYE+PIETWEELK
Sbjct: 10  LQYESKIEHVFDCNNFSEERKLKLAVAEFCDYA-NIWWTSLKSESRRNYEEPIETWEELK 69

Query: 86  ALMRKRYIPKHYSRELKQKLYALQQGSKSVEDLF 120
           ALMRKRYIPKHYSRELKQKLYALQQGSKSVED +
Sbjct: 70  ALMRKRYIPKHYSRELKQKLYALQQGSKSVEDYY 102

[Close]

BLAST of Lag0005375 vs. NCBI nr
Match: XP_022972407.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111470974 [Cucurbita maxima])

HSP 1 Score: 164.1 bits (414), Expect = 7.5e-37
Identity = 80/91 (87.91%), Postives = 85/91 (93.41%), Query Frame = 0


Query: 23  EEHLQYESKIELVFNCNNFSEEKKLKLAVAEFCDYANNIWWTSLESEWRRNYEDPIETWE 82
           EE+LQYESKIE VF+CNNFSEE+KLKLAVAEFCDYA  IWWTSL+SEWRRNYE+PIETWE
Sbjct: 9   EEYLQYESKIEHVFDCNNFSEERKLKLAVAEFCDYA-IIWWTSLKSEWRRNYEEPIETWE 68

Query: 83  ELKALMRKRYIPKHYSRELKQKLYALQQGSK 114
           ELK LMRKRYIPKHYSR LKQKLY LQQGSK
Sbjct: 69  ELKTLMRKRYIPKHYSRILKQKLYTLQQGSK 98

The following BLAST results are available for this feature:

BLAST of Lag0005375 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023521225.1	4.7e-47	80.51	LOW QUALITY PROTEIN: uncharacterized protein LOC111784949, partial [Cucurbita pe...	[more]
XP_023534142.1	8.0e-47	81.20	uncharacterized protein LOC111795765 [Cucurbita pepo subsp. pepo]	[more]
XP_038888883.1	1.6e-39	70.34	uncharacterized protein LOC120078660 [Benincasa hispida]	[more]
XP_022158198.1	2.1e-39	90.43	uncharacterized protein LOC111024735 [Momordica charantia]	[more]
XP_022972407.1	7.5e-37	87.91	LOW QUALITY PROTEIN: uncharacterized protein LOC111470974 [Cucurbita maxima]	[more]

BLAST of Lag0005375 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005162	Retrotransposon gag domain	PFAM	PF03732	Retrotrans_gag	coord: 49..117 e-value: 8.4E-12 score: 45.2
None	No IPR available	PANTHER	PTHR35046	ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN	coord: 8..118

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0005375.1	Lag0005375.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding