Lag0005366 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0005366
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Ty3/gypsy retrotransposon protein
Location	chr6: 15371377 .. 15374177 (+)
RNA-Seq Expression	Lag0005366
Synteny	Lag0005366

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAGGGGAACGAGGAAAAAACCTCTAACTCACACAACTAAACAACCTAGGCTATCTAGGTCAGTCTACAGGAACGACATCGCTCTGATACCAACTGTAACGCCCCAGGTTCTCTAACCTCTAGCCTAGCGACGCTACTACTCACTCAGACTTATAAGCAACTAGGATAACTTCTCTTAGACCGAAAGTACCGAAAATTTCGGCAGCATAACAACGTAAAACGGGTTATCCCAAAATTTTTAAACACCTGATAAAGAATTTTAACACTTCTAAACAGGCAACCAACCAAGCTCCACCAACTAAAGATAGTTTTCACAACTCATCTACTCTAAATAGGACAAACTTTACCAAATCACGCAATAAGCCAAACCATGCTATAAAGACATTTTTATTAACAGAATTAACTATTCCACTGGCTAATAACATATTATTGAACTTTGCAAGACTATCTAACTAGTTTAAAGCTCAAAACAAAGACCTTTCTCAGGTGAATCCTCACCGTCACAGAACCACAGAAATAAACATTTCAGGCTATCTAGTAATGCAACTAAGACAAGCAGAACACAAAAAGACTCAGCGCCTAGGGATTTTCCTCATAGTCCTCCTCGCCACCAAGGTCTGGATCATCCTCGATACCTGCAACATCTAAAATATTGGGGGGAAGGTGGGGAAGGGGGTATTAGTACAACCGCGGTACTGGTAAGTAGCTCACACGAGCTAGATCACAGCCATCAAACAATGCAAACAGCATGCTTCTCATACGCATACAACATACTTACAAAAGCGGTAAAACTCATCGTGCTTAGAAAGCAATAAACGACAACATGCATATGCTTCTCACACTATGCACCCACACCCTACTAGACCACGCACGATTTACGCGTCATGCTACGCTACCATCCACATGCCTTACGGTCATGCTACGCTAAACTAACCGCATGCATTACGCGTCATGCTACGCAAGCCACACACGTGCATTACGCGCCAAGCTACGCTAAACTATTTGCATGCATTACGAGTCATGCTACGCTAATCCAAACACGTGAATTACGTGCCACGCTGCGCACCTACACACAGTGTTTTCAAGGCGACCCAAGGCGCGCGCCTATGGCGAGAGGCAAGGCGATCTTGGGCTACTGCGCCTTGAAGGCAGCTAGGGCGAGCTCCTTCAACCAGGCGAGCGCTTGGATGCGCCTTTTGTCGCCTTGTTGTGCCTTCAAAAATGGTGAAGGCGAGCGCCTGTTTTTTTTTTCCCTAATATTTCATAACAGGTAAAGAAATGGAAAATTTGGGAGAGGAAAAATGAAAATATGGAGAAGAGTTGGAAGATTCGTGAAACAAAGAAAATAAGAAGGAGAAGAATGAGAAGAAGAGACGAAAGAGAAGTAGAAGAAAGAAAAGTGAAAATAATGTTATGAAGAAGAAAATAGGAAGAGTCAGAAGATAAAGAAGAAAAAGAAGGAGGTGGAGGAGGAGAATGCGAAGAGACAAGAAAAAGAAAAGTCAGAAGCATGGCACTAAAGAGAGTTTGCTGTATGTTGCATGCAATACCTCTCTTCCATGACTGACAGATGGCAAACTATTTCCCTTTTCATTAATGTCTTCGTAGTACTTTCCAATTAATATCTTTATCACTGTGGTTGAAGAAGAAAAGTCTCCCACTAAACCAATGAGATTATTTAAAGCATGTTTTGTTTAATTCATCACAGGCTCACTCTCACTAACCTTTTTTTTTTCATTCTTAAAAAAAAAAACTCTACGTTTTTTTTCTTTATATATCTCCACTTTTATCTCATCATGTAGGTCAACTTTTATTTAAATATTAAATAGTTTTGTTGATGTTTTTATATTTTAAAATTTAAGTACTTAATTTTTTTCTATTATGGATAATATTTATTTAGTATTTTATTAAGTGCGCCTTGCTTCGCTCAAGCGACGCCTTTTCGTCGCCTCTCGCCTCCAAGCGATTAGGAGACTTGTCGCCTTAAGATGCGCCTTGCACTTTGAAAACACTGCCTACACATGAATTACGCGTCATGCAACGCAACCGCTAGACTCATGCTACACATCCCGTGACACAAGTTAGCCTAATCCATCATGCTCGACCCAAACATAACATGCTTAACAACGACCACAACCCAGCAGTCACATATCTCATGCTTAGTCAACAACACATATGCTTACCACAAGTACAAACAGAACAAGCTTATCTCAAGCGTTACAGAACAAATATAAACGACATAGCACGCTCAACACAAGCATTCAATACGTTATATATATCAAAGCATGCTTTACACACGAACAAGGATAACATAAACAAACGCCGTGCTTCACACAATCAAACAAGATCAAGCAAGTAGAAACTACTTACTAGCACTCTTAAATACCAGTGAAAATACAAGAGCAAGCTCTAAGCAAACCTACAACACAACCAAGGGCTCCTAGAGATTAGGAACAGCTTAAGAACCAACCAAAAACCTAAGGGAAACTAAACAAATAATAGGGAACTAAAACTCACCCAAACAGGGGCTTAACCTTACTGGAACAACCTAACACAGCACTTAAGCTCCTTAAACAGGTGTTGTCCAAGGTCTGAAACCACACGAAACCAACACCAAAAAGGCACCCAAGGGTTAGAAATTGCACTAAAGCCCACCATAACAATTACCAAAGGTTTTGGGGCATGGAGACTTACCGATCAACACCAAACAGACCCAATTAGGTGCTGTACAGCAGCTGCAAATGGCCCGAATCTGCAATTGGGAAGTCGTTACAGCATGGGTAACCAAGATCTTTAG

mRNA sequence

ATGGAGAGGGGAACGAGGAAAAAACCTCTAACTCACACAACTAAACAACCTAGGCTATCTAGGTCAGTCTACAGGAACGACATCGCTCTGATACCAACTGTAACGCCCCAGAACCACAGAAATAAACATTTCAGGCTATCTAGTAATGCAACTAAGACAAGCAGAACACAAAAAGACTCAGCGCCTAGGGATTTTCCTCATAGTCCTCCTCGCCACCAAGGTCTGGATCATCCTCGATACCTGCAACATCTAAAATATTGGGGGGAAGGTGGGGAAGGGGGTATTAGTACAACCGCGGTACTGACCACGCACGATTTACGCGTCATGCTACGCTACCATCCACATGCCTTACGGTCATGCTACGCTAAACTAACCGCATGCATTACGCGTCATGCTACGCAAGCCACACACGTGCATTACGCGCCAAGCTACGCTAAACTATTTGCATGCATTACGAGTCATGCTACGCTAATCCAAACACGTGAATTACGTGCCACGCTGCGCACCTACACACAGTGTTTTCAAGGCGACCCAAGGCGCGCGCCTATGGCGAGAGGCAAGGCGATCTTGGGCTACTGCGCCTTGAAGGCAGCTAGGGCGAGCTCCTTCAACCAGGCGAGCGCTTGGATGCGCCTTTTGTCGCCTTGTTGTGCCTTCAAAAATGGTGAAGGCGAGCGCCTGTTTTTTTTTTCCCTAATATTTCATAACAGGTGTTGTCCAAGGTCTGAAACCACACGAAACCAACACCAAAAAGGCACCCAAGGGTTAGAAATTGCACTAAAGCCCACCATAACAATTACCAAAGGTTTTGGGGCATGGAGACTTACCGATCAACACCAAACAGACCCAATTAGGTGCTGTACAGCAGCTGCAAATGGCCCGAATCTGCAATTGGGAAGTCGTTACAGCATGGGTAACCAAGATCTTTAG

Coding sequence (CDS)

ATGGAGAGGGGAACGAGGAAAAAACCTCTAACTCACACAACTAAACAACCTAGGCTATCTAGGTCAGTCTACAGGAACGACATCGCTCTGATACCAACTGTAACGCCCCAGAACCACAGAAATAAACATTTCAGGCTATCTAGTAATGCAACTAAGACAAGCAGAACACAAAAAGACTCAGCGCCTAGGGATTTTCCTCATAGTCCTCCTCGCCACCAAGGTCTGGATCATCCTCGATACCTGCAACATCTAAAATATTGGGGGGAAGGTGGGGAAGGGGGTATTAGTACAACCGCGGTACTGACCACGCACGATTTACGCGTCATGCTACGCTACCATCCACATGCCTTACGGTCATGCTACGCTAAACTAACCGCATGCATTACGCGTCATGCTACGCAAGCCACACACGTGCATTACGCGCCAAGCTACGCTAAACTATTTGCATGCATTACGAGTCATGCTACGCTAATCCAAACACGTGAATTACGTGCCACGCTGCGCACCTACACACAGTGTTTTCAAGGCGACCCAAGGCGCGCGCCTATGGCGAGAGGCAAGGCGATCTTGGGCTACTGCGCCTTGAAGGCAGCTAGGGCGAGCTCCTTCAACCAGGCGAGCGCTTGGATGCGCCTTTTGTCGCCTTGTTGTGCCTTCAAAAATGGTGAAGGCGAGCGCCTGTTTTTTTTTTCCCTAATATTTCATAACAGGTGTTGTCCAAGGTCTGAAACCACACGAAACCAACACCAAAAAGGCACCCAAGGGTTAGAAATTGCACTAAAGCCCACCATAACAATTACCAAAGGTTTTGGGGCATGGAGACTTACCGATCAACACCAAACAGACCCAATTAGGTGCTGTACAGCAGCTGCAAATGGCCCGAATCTGCAATTGGGAAGTCGTTACAGCATGGGTAACCAAGATCTTTAG

Protein sequence

MERGTRKKPLTHTTKQPRLSRSVYRNDIALIPTVTPQNHRNKHFRLSSNATKTSRTQKDSAPRDFPHSPPRHQGLDHPRYLQHLKYWGEGGEGGISTTAVLTTHDLRVMLRYHPHALRSCYAKLTACITRHATQATHVHYAPSYAKLFACITSHATLIQTRELRATLRTYTQCFQGDPRRAPMARGKAILGYCALKAARASSFNQASAWMRLLSPCCAFKNGEGERLFFFSLIFHNRCCPRSETTRNQHQKGTQGLEIALKPTITITKGFGAWRLTDQHQTDPIRCCTAAANGPNLQLGSRYSMGNQDL

Homology

[Close]

BLAST of Lag0005366 vs. NCBI nr
Match: KAA0032454.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYJ99900.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 62.4 bits (150), Expect = 8.0e-06
Identity = 29/43 (67.44%), Postives = 34/43 (79.07%), Query Frame = 0


Query: 177  DPRRAPMARGKAILGYCALKAARASSFNQASAWMRLLSPCCAF 220
            DP+RAP ARG+A   +CALKAAR S+FNQA A + LLSPCC F
Sbjct: 1543 DPKRAPQARGEATFAHCALKAARESTFNQALATLHLLSPCCDF 1585

[Close]

BLAST of Lag0005366 vs. ExPASy TrEMBL
Match: A0A5A7SMQ7 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold701G00120 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 3.9e-06
Identity = 29/43 (67.44%), Postives = 34/43 (79.07%), Query Frame = 0


Query: 177  DPRRAPMARGKAILGYCALKAARASSFNQASAWMRLLSPCCAF 220
            DP+RAP ARG+A   +CALKAAR S+FNQA A + LLSPCC F
Sbjct: 1543 DPKRAPQARGEATFAHCALKAARESTFNQALATLHLLSPCCDF 1585

The following BLAST results are available for this feature:

BLAST of Lag0005366 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0032454.1	8.0e-06	67.44	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYJ99900.1 Ty3/gyp...	[more]

BLAST of Lag0005366 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0005366 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SMQ7	3.9e-06	67.44	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]

BLAST of Lag0005366 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 34..76
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 34..56
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 57..76
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0005366.1	Lag0005366.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding