Lag0005267 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0005267
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Ty3/gypsy retrotransposon protein
Location	chr6: 13048499 .. 13052257 (-)
RNA-Seq Expression	Lag0005267
Synteny	Lag0005267

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTGTTATCAGACTTTCGTCAGCAGTACCCAGCATTCCACCTTGAGGACAAGGTGTCTTTGACCCCGAGAGGTGATGTTAGGCCACTGTAATTGAACATTATGTTAGGAGGGGTAAAAAGGGGTTTTCAGAGTCTGGCAAGTTAGTTAAAGAAGATGGGGGACCAGCCGTGAGTGATATATGAGTATGTGCAAGGGAATGTTTTGGCTAGGCTTTTTGTTTGTAATTAGCTCGTCAAGCTAGTGTGAGAGAAAGGAGAGTTTACCAGCCCTCTCGAATTGGCTGGGAGTTTTGTAACCCTCTTGGGACTCTTTCCTTGATAATAAAAACAACACAGTGAGGGATACCTCACACCATGTTGTGTGAAACTGTTTAAATATTTTGTTTGAAGCTACTGGAGGAACCCGTGTTTCATATGAATTCCCCATCCACCCACCAAAAATAGAGTGTTAATAGTAAGATTAACTTAAAAAATCATCAGCCATTATGCTCTCTATCCTTATTGGCATTGTCGTGCTGATAGTATGATAAACCCCAAATAACAAGAGTATATGAGCGAAGGCGTGTGAGAAAAAAAGATAACATGTAGAAGGGCGTTTGGGTCTTTTTGTGGGTGGGACCCTCTCTGTAAGTTTGTTGAGAGTAGGGTTAAGAGAGTGAGTGTTTTGAGTGTTAGGGATCTTTTGGCTATTGTGAATTTGTATTTCTCTGAGGAGAACTTTTGGAGAGAAGGGAGTTCTCGAATCTTCCCTATTTCATGTTGATAAATAAAATTGAAAGTCGAGGCTGCTCATAGTGATTGACTTATTGGAGAGTGATAAAAATGTTGGAGAAGAATGGTAGTGGTGGAGTGAGCAACTTCAACGTTGGGGTGCTCCAATATGCAAAACTAGAGTGTTGATAGTAAGATTAACTTAACTTTCCAATAAAAAAAATAGTCTCCATGATCCAATTTCCGTTTTTCTCCATGTTGAGTTTGGACCTTGATTCCAAGAAAAGAACTTCGTTTGGTTGCCTAGAATAGGAAAGGAAAGAAAAAAATGTACTAGAGTTATTTTACTTGTAAACAGATCAAAAACTAGATGGGTCGTAAAGGTTTGATGTAAGTTATTGTTCCCTAGAATGGACGGAGAAGGGGTGGCTTAAGATTGCTTTGATTGGGATGAGAAAATTTGTCAGTACGAAATCCCATATCTTCATTTCATTCATCCTCAAGGGTTTTTGAGCTGTAATTCTTGAAGTACTTGAGAGATGTGAAGTGTTATGTCAGTAATCGATTCAACAAACAAAGAAATAAAGAAGCGAGAAGAAACAACACAGATTTACATGGTTCACTAACAGTGTGTTAGCTACATCCACAGAAAGAGGAAGAAAGTATTTTGATTAGTGAGGAATAACTAGATAGAAAGATTAGGGCAGTTTATGATAAGAGGGTTTATATATGGTACCCCTCCTAATCCTAACAGGTTTGGCCCAAAATAAAACCCAAAACAAATATAAAATAACTAATCTCGATACAAAATTAAGCTTTTGGGGCGTTGCCCTCGAACCCCCAAAACCGGGCGCTTTGCCCTTGGACCTTGACTCATTGGTCCTTCGGAGCGCCAAATAACAGATTCAAGGCATATCAACATGTAGTTTGACATATTACAAGAGTAGTTGTGAAAAGTTCTTTTCCCTGTTTTATTTGTTTTAGTTTAGCTGTTAATTTATTAGCTCGCCTCTCATAATGAATGACATTGCATGGCATGTAAATGGTCAACTGATTGGTAAAACAAAATCCAGATGCCTAAAGTGGAAGCAAGCCAAATTTTCTGTTAATCCACTCTAAACCTTTGTGATATGAATTCTTCTTACCCCTTCCTTTCCGTTCTTCATTGTGTTTCTGGTTGTTATTTGTGGCTGCTGTAGAAGCTTTAAAAGTGGTATAAAGTGTGATGATAGATTTCTCTTGAAAATTTGGTCCAGAAGTTGGAATATTTGGTTATTCACTTGAACTTCAGTTCAATTTTTGAAATCTGAAGTGAAAGTGTTTCAACAGAAAAGGAGACTTCTCGCCTGGAAGAAAATTTAGGTGATTTTTTTTGGATGAAGTTTTCAAGGACACCAGATGATCTGCAGACTTCTCCTACTACATTTACTGAAGATTAGTAGCCTGAGTTAAGAGAGACTACATACGGCTTGGTCATACTATTGTTAGGGACCATGTCAGTATAAGTTGCCTTTGTCTCACGTTGGAAAGATATGGGCTCCTAATGGGATATATAAGTGGTTGGTTCTCCCTCCCCAATCGCCTGGCTTTTGGGGTGTGGCTCTCCAACTACTTAGATACCTAACAATTGGTATCAAAGACGGTGGTCGACGGCCTCGGAGAGGAGTGGCGGCGAAAGGGCTAACTAGAACCAGCCGAGTGAAGTTTCGCCGTGCACAGCCGCCGAGACATCGGCTTTCCGAGGAGGGGCAATTGATAGGGACCAAGGCAGTATGGGATGCCTTTGTCCCACATTGGAAAGATATGGGCTCCTAATGGGGTATATAAGTGGTTGGTTCTCCCTCCCCAATCGCCTTGCTTTTGGGGTATGACTCTCCAACTACTTAGATACCTAACAATTTTGGAGAGAGAGATTGTCTTTTGATCGATTGTGGGGTGACTCACAATTTCATTTCACAGAAAGTGGTGGATGAGCTGAAAATTCCCATGATCTCGTCTTCCAACTACGGAATAGTGATGGGGAATGAGTTACCGACGAGAGGTAAGGGGTCTGTAAGGGAGTTGTCATCACGCTACCGGAAGTCACTATTACTGAAGATTTCCTACCCTTGGAACTAGGCGCGATCGATGTAATTTTGGGTATGCAGTGGCTTCGAACCATGGGCCGGATGGGGGTGGACTTTTGAAGCCAGGGACAAGAAAGTAACCATTCAGGGAGATCCAGCTCTCACCTGTGCAGAAGTTTCTTTGAAAATGATGGTCAAGTTGTGGGAGGATGAGGATAAGAGATTTGCGGTTCAGATGTGTGAGCTGAAATTGGAAGTCGAGGGAGAGAGTCTAATTCGAGGAATGAGGAGGCAAATGAGACCAAGATGCCTGGGGAAGTGTTATCCCTACTTGGGGAATACGAAGATGTTTTCAACCTACTTGAAGGGCTTCCCTCGAAGAGAGCTGTTGATCACCAGATTGTCATGAAAGAAGGACATGAGCTAGTCAATGTGCGGCCGTATAAATATGCCCATGCGCAGAAAGCGGAGATAGAGAAACTGATGATGGAAATGCTCTCCACAGGAATTGTACGTCCCAGGAACAGTCCATTTTCTAGCCGTGTGTTCCTAATCAAGAAGAAAGATGGGGGTTGGAGATTTTGTGTGGACTGTCGCGTGCTAAATCAGGTGACAGTACCCGACAAGTTCCCCATCCCAATTATAGAATAGTTACTTGATGAACTTCATGGTTCGACCATTTTTTCGAAGCTTGATTTGAAGTCCTAGTATCATCAAATTCGAATGAAGGAAGAAGATGTGGAAAAGACAGCTTTTCGTACTCATGAAGGGCATTACGAGTTTCTAGTGATGCCATTCGGATTGATGAACGGGCTGACGACGTTCCAATCTTTGATGAATCAAGTGTTCAGACTGTTCCTAAGGTGCTACTTATTGGTTTTCTTTGATGATATCTTGGTCTATAGCCCGGATTTGGAAACTCACCTTAAGCATCTGGGCATGGTTTTCAATGTCCTTCGTGACAATGTGATAGGCCTTAG

mRNA sequence

ATGCTGTTATCAGACTTTCGTCAGCAGTACCCAGCATTCCACCTTGAGGACAAGGGACCATGTCAGTATAAGTTGCCTTTGTCTCACGTTGGAAAGATATGGGCTCCTAATGGGATATATAAGTGGTTGGTTCTCCCTCCCCAATCGCCTGGCTTTTGGGGTGTGGCTCTCCAACTACTTAGATACCTAACAATTGGTATCAAAGACGGTGGTCGACGGCCTCGGAGAGGAGTGGCGGCGAAAGGGCTAACTAGAACCAGCCGAGTGAAGTTTCGCCGTGCACAGCCGCCGAGACATCGGCTTTCCGAGGAGGGGCAATTGATAGGGACCAAGGCAAAAGTGGTGGATGAGCTGAAAATTCCCATGATCTCGTCTTCCAACTACGGAATAGTGATGGGGAATGAGTTACCGACGAGAGTGGCTTCGAACCATGGGCCGGATGGGGGTGGACTTTTGAAGCCAGGGACAAGAAATCGAGGGAGAGAGTCTAATTCGAGGAATGAGGAGGCAAATGAGACCAAGATGCCTGGGGAAGTGTTATCCCTACTTGGGGAATACGAAGATGTTTTCAACCTACTTGAAGGGCTTCCCTCGAAGAGAGCTGTTGATCACCAGATTGTCATGAAAGAAGGACATGAGCTAGTCAATGTGCGGCCGTATAAATATGCCCATGCGCAGAAAGCGGAGATAGAGAAACTGATGATGGAAATGCTCTCCACAGGAATTGTACGTCCCAGGAACAGTCCATTTTCTAGCCGTGTGTTCCTAATCAAGAAGAAAGATGGGGGTTGGAGATTTTGTGTGGACTGTCGCGTGCTAAATCAGGAAGAAGATGTGGAAAAGACAGCTTTTCGTACTCATGAAGGGCATTACGAGTTTCTAGTGATGCCATTCGGATTGATGAACGGGCTGACGACGTTCCAATCTTTGATGAATCAAGTGTTCAGACTGTTCCTAAGGCCTTAG

Coding sequence (CDS)

ATGCTGTTATCAGACTTTCGTCAGCAGTACCCAGCATTCCACCTTGAGGACAAGGGACCATGTCAGTATAAGTTGCCTTTGTCTCACGTTGGAAAGATATGGGCTCCTAATGGGATATATAAGTGGTTGGTTCTCCCTCCCCAATCGCCTGGCTTTTGGGGTGTGGCTCTCCAACTACTTAGATACCTAACAATTGGTATCAAAGACGGTGGTCGACGGCCTCGGAGAGGAGTGGCGGCGAAAGGGCTAACTAGAACCAGCCGAGTGAAGTTTCGCCGTGCACAGCCGCCGAGACATCGGCTTTCCGAGGAGGGGCAATTGATAGGGACCAAGGCAAAAGTGGTGGATGAGCTGAAAATTCCCATGATCTCGTCTTCCAACTACGGAATAGTGATGGGGAATGAGTTACCGACGAGAGTGGCTTCGAACCATGGGCCGGATGGGGGTGGACTTTTGAAGCCAGGGACAAGAAATCGAGGGAGAGAGTCTAATTCGAGGAATGAGGAGGCAAATGAGACCAAGATGCCTGGGGAAGTGTTATCCCTACTTGGGGAATACGAAGATGTTTTCAACCTACTTGAAGGGCTTCCCTCGAAGAGAGCTGTTGATCACCAGATTGTCATGAAAGAAGGACATGAGCTAGTCAATGTGCGGCCGTATAAATATGCCCATGCGCAGAAAGCGGAGATAGAGAAACTGATGATGGAAATGCTCTCCACAGGAATTGTACGTCCCAGGAACAGTCCATTTTCTAGCCGTGTGTTCCTAATCAAGAAGAAAGATGGGGGTTGGAGATTTTGTGTGGACTGTCGCGTGCTAAATCAGGAAGAAGATGTGGAAAAGACAGCTTTTCGTACTCATGAAGGGCATTACGAGTTTCTAGTGATGCCATTCGGATTGATGAACGGGCTGACGACGTTCCAATCTTTGATGAATCAAGTGTTCAGACTGTTCCTAAGGCCTTAG

Protein sequence

MLLSDFRQQYPAFHLEDKGPCQYKLPLSHVGKIWAPNGIYKWLVLPPQSPGFWGVALQLLRYLTIGIKDGGRRPRRGVAAKGLTRTSRVKFRRAQPPRHRLSEEGQLIGTKAKVVDELKIPMISSSNYGIVMGNELPTRVASNHGPDGGGLLKPGTRNRGRESNSRNEEANETKMPGEVLSLLGEYEDVFNLLEGLPSKRAVDHQIVMKEGHELVNVRPYKYAHAQKAEIEKLMMEMLSTGIVRPRNSPFSSRVFLIKKKDGGWRFCVDCRVLNQEEDVEKTAFRTHEGHYEFLVMPFGLMNGLTTFQSLMNQVFRLFLRP

Homology

[Close]

BLAST of Lag0005267 vs. NCBI nr
Match: KAA0056659.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 192.2 bits (487), Expect = 6.9e-45
Identity = 104/203 (51.23%), Postives = 124/203 (61.08%), Query Frame = 0


Query: 158 NRGRESNSRNEEANETKMPGEVLSLLGEYEDVFNLLEGLPSKRAVDHQIVMKEGHELVNV 217
           N G +S + ++  +E  +P  +  LL +Y DVFN    LP KR VDH+I+   G + +NV
Sbjct: 540 NEGADSKNTSQPGDEEGLP-MIQFLLHQYSDVFNSPTTLPPKRTVDHRILTIPGQKPINV 599

Query: 218 RPYKYAHAQKAEIEKLMMEMLSTGIVRPRNSPFSSRVFLIKKKDGGWRFCVDCRVLN--- 277
           RPYKY H QK EIEKL++EML TGI+RP +SPFSS V L+KKKDGGWRFCVD R LN   
Sbjct: 600 RPYKYGHQQKEEIEKLVIEMLQTGIIRPSHSPFSSPVLLVKKKDGGWRFCVDYRKLNKIT 659

Query: 278 -------------------------------------QEEDVEKTAFRTHEGHYEFLVMP 321
                                                +EED+EKTAFRTHEGHYEFLVMP
Sbjct: 660 IADKFPIPVIEELLDELHGATVFSKLDLKSGYHQIRMKEEDIEKTAFRTHEGHYEFLVMP 719

[Close]

BLAST of Lag0005267 vs. NCBI nr
Match: KAA0048289.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 190.7 bits (483), Expect = 2.0e-44
Identity = 102/204 (50.00%), Postives = 126/204 (61.76%), Query Frame = 0


Query: 156 TRNRGRESNSRNEEANETKMPGEVLSLLGEYEDVFNLLEGLPSKRAVDHQIVMKEGHELV 215
           T N  +ES +  ++ +E ++P  +  LL +Y DVF++ + LP KRAVDH+I    G + +
Sbjct: 476 TENDYKESKTPGQQGDEEELP-MIQFLLNQYSDVFDIPKTLPPKRAVDHRIFTMPGQKPI 535

Query: 216 NVRPYKYAHAQKAEIEKLMMEMLSTGIVRPRNSPFSSRVFLIKKKDGGWRFCVDCRVLN- 275
           NVRPYKY H Q+ EIEKL+ EML TGI+RP +SPFSS V L+KKKDGGWRFCVD R LN 
Sbjct: 536 NVRPYKYGHNQEEEIEKLVTEMLQTGIIRPSHSPFSSPVLLVKKKDGGWRFCVDYRKLNK 595

Query: 276 ---------------------------------------QEEDVEKTAFRTHEGHYEFLV 320
                                                  +EED+EKTAFRTHEGHYEF+V
Sbjct: 596 ITIADKFPIPVIEELLDELHGATVFSKLDLKSGYHQTRMKEEDIEKTAFRTHEGHYEFMV 655

[Close]

BLAST of Lag0005267 vs. NCBI nr
Match: TYK07971.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 190.7 bits (483), Expect = 2.0e-44
Identity = 102/204 (50.00%), Postives = 126/204 (61.76%), Query Frame = 0


Query: 156 TRNRGRESNSRNEEANETKMPGEVLSLLGEYEDVFNLLEGLPSKRAVDHQIVMKEGHELV 215
           T N  +ES +  ++ +E ++P  +  LL +Y DVF++ + LP KRAVDH+I    G + +
Sbjct: 476 TENDYKESKTPGQQGDEEELP-MIQFLLNQYSDVFDIPKTLPPKRAVDHRIFTMPGQKPI 535

Query: 216 NVRPYKYAHAQKAEIEKLMMEMLSTGIVRPRNSPFSSRVFLIKKKDGGWRFCVDCRVLN- 275
           NVRPYKY H Q+ EIEKL+ EML TGI+RP +SPFSS V L+KKKDGGWRFCVD R LN 
Sbjct: 536 NVRPYKYGHNQEEEIEKLVTEMLQTGIIRPSHSPFSSPVLLVKKKDGGWRFCVDYRKLNK 595

Query: 276 ---------------------------------------QEEDVEKTAFRTHEGHYEFLV 320
                                                  +EED+EKTAFRTHEGHYEF+V
Sbjct: 596 ITIADKFPIPVIEELLDELHGATVFSKLDLKSGYHQTRMKEEDIEKTAFRTHEGHYEFMV 655

[Close]

BLAST of Lag0005267 vs. NCBI nr
Match: KAA0065995.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK28942.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 188.3 bits (477), Expect = 1.0e-43
Identity = 102/203 (50.25%), Postives = 122/203 (60.10%), Query Frame = 0


Query: 158 NRGRESNSRNEEANETKMPGEVLSLLGEYEDVFNLLEGLPSKRAVDHQIVMKEGHELVNV 217
           N  +ES    ++ +E  +P  +  LL +Y DVF++   LP KRAVDH+I    G + +NV
Sbjct: 435 NDYKESKKTGQQGDEEGLP-MIQFLLNQYSDVFDIPTTLPPKRAVDHRIFTMPGQKPINV 494

Query: 218 RPYKYAHAQKAEIEKLMMEMLSTGIVRPRNSPFSSRVFLIKKKDGGWRFCVDCRVLN--- 277
           RPYKY H QK EIEKL+ EML TGI+RP +SPFSS V L+KKKDGGWRFCVD   LN   
Sbjct: 495 RPYKYGHQQKEEIEKLVTEMLQTGIIRPSHSPFSSPVLLVKKKDGGWRFCVDYGKLNKIT 554

Query: 278 -------------------------------------QEEDVEKTAFRTHEGHYEFLVMP 321
                                                +EED+EKTAFRTHEGHYEF+VMP
Sbjct: 555 IADKFPIPVIEELLDELHGATVFSKLDLKSGYHQIRMKEEDIEKTAFRTHEGHYEFMVMP 614

[Close]

BLAST of Lag0005267 vs. NCBI nr
Match: KAA0066816.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 188.3 bits (477), Expect = 1.0e-43
Identity = 101/203 (49.75%), Postives = 123/203 (60.59%), Query Frame = 0


Query: 158 NRGRESNSRNEEANETKMPGEVLSLLGEYEDVFNLLEGLPSKRAVDHQIVMKEGHELVNV 217
           N   +S + ++  +E  +P  +  LL +Y DVFN    LP KR +DH+I+   G + +NV
Sbjct: 612 NEDADSKNTSQTGDEEGLP-MIQFLLHQYSDVFNSPTTLPPKRTIDHRILTLPGQKPINV 671

Query: 218 RPYKYAHAQKAEIEKLMMEMLSTGIVRPRNSPFSSRVFLIKKKDGGWRFCVDCRVLN--- 277
           RPYKY H QK EIEKL++EML TGI+RP +SPFSS V L+KKKDGGWRFCVD R LN   
Sbjct: 672 RPYKYGHQQKEEIEKLVIEMLQTGIIRPSHSPFSSPVLLVKKKDGGWRFCVDYRKLNKIT 731

Query: 278 -------------------------------------QEEDVEKTAFRTHEGHYEFLVMP 321
                                                +EED+EKTAFRTHEGHYEF+VMP
Sbjct: 732 IADKFPIPVIEELLDELHGATMFSKLDLKSGYHQIRMKEEDIEKTAFRTHEGHYEFVVMP 791

[Close]

BLAST of Lag0005267 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 82.4 bits (202), Expect = 1.0e-14
Identity = 51/155 (32.90%), Postives = 67/155 (43.23%), Query Frame = 0


Query: 202 VDHQIVMKEGHELVNVRPYKYAHAQKAEIEKLMMEMLSTGIVRPRNSPFSSRVFLIKKKD 261
           V H I +K G  L  ++PY      + EI K++ ++L    + P  SP SS V L+ KKD
Sbjct: 584 VKHDIEIKPGARLPRLQPYHVTEKNEQEINKIVQKLLDNKFIVPSKSPCSSPVVLVPKKD 643

Query: 262 GGWRFCVDCRVLN----------------------------------------QEEDVEK 317
           G +R CVD R LN                                        + +D  K
Sbjct: 644 GTFRLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYK 703

[Close]

BLAST of Lag0005267 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 82.4 bits (202), Expect = 1.0e-14
Identity = 51/155 (32.90%), Postives = 67/155 (43.23%), Query Frame = 0


Query: 202 VDHQIVMKEGHELVNVRPYKYAHAQKAEIEKLMMEMLSTGIVRPRNSPFSSRVFLIKKKD 261
           V H I +K G  L  ++PY      + EI K++ ++L    + P  SP SS V L+ KKD
Sbjct: 610 VKHDIEIKPGARLPRLQPYHVTEKNEQEINKIVQKLLDNKFIVPSKSPCSSPVVLVPKKD 669

Query: 262 GGWRFCVDCRVLN----------------------------------------QEEDVEK 317
           G +R CVD R LN                                        + +D  K
Sbjct: 670 GTFRLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYK 729

[Close]

BLAST of Lag0005267 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 6.6e-14
Identity = 59/195 (30.26%), Postives = 83/195 (42.56%), Query Frame = 0


Query: 171 NETKMPGEVLSLLGEYEDV-FNLLEGLPSKRAVDHQIVMKEGHELVNVRPYKYAHAQKAE 230
           NE K    + +LL +Y D+ ++  + L       H I  K  H L     Y Y  A + E
Sbjct: 167 NEEKQ--RLCALLQKYHDIQYHEGDKLTFTNQTKHTINTK--HNLPLYSKYSYPQAYEQE 226

Query: 231 IEKLMMEMLSTGIVRPRNSPFSSRVFLIKKKDGG-----WRFCVDCRVLNQ--------- 290
           +E  + +ML+ GI+R  NSP++S ++++ KK        +R  +D R LN+         
Sbjct: 227 VESQIQDMLNQGIIRTSNSPYNSPIWVVPKKQDASGKQKFRIVIDYRKLNEITVGDRHPI 286

Query: 291 -------------------------------EEDVEKTAFRTHEGHYEFLVMPFGLMNGL 320
                                           E V KTAF T  GHYE+L MPFGL N  
Sbjct: 287 PNMDEILGKLGRCNYFTTIDLAKGFHQIEMDPESVSKTAFSTKHGHYEYLRMPFGLKNAP 346

[Close]

BLAST of Lag0005267 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 9.5e-13
Identity = 52/182 (28.57%), Postives = 82/182 (45.05%), Query Frame = 0


Query: 181 SLLGEYEDVFN-LLEGLPSKRAVDHQIVMKEGHELVNVRPYKYAHAQKAEIEKLMMEMLS 240
           SLLGE+  +F   L G+  + AV  +I      + +  + Y Y    + E+E+ + E+L 
Sbjct: 90  SLLGEFPRIFEPPLSGMSVETAVKAEI-RTNTQDPIYAKSYPYPVNMRGEVERQIDELLQ 149

Query: 241 TGIVRPRNSPFSSRVFLIKKK-----DGGWRFCVDCRVLN-------------------- 300
            GI+RP NSP++S ++++ KK     +  +R  VD + LN                    
Sbjct: 150 DGIIRPSNSPYNSPIWIVPKKPKPNGEKQYRMVVDFKRLNTVTIPDTYPIPDINATLASL 209

Query: 301 --------------------QEEDVEKTAFRTHEGHYEFLVMPFGLMNGLTTFQSLMNQV 317
                               +E D+ KTAF T  G YEFL +PFGL N    FQ +++ +
Sbjct: 210 GNAKYFTTLDLTSGFHQIHMKESDIPKTAFSTLNGKYEFLRLPFGLKNAPAIFQRMIDDI 269

[Close]

BLAST of Lag0005267 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 6.1e-12
Identity = 45/147 (30.61%), Postives = 63/147 (42.86%), Query Frame = 0


Query: 218 RPYKYAHAQKAEIEKLMMEMLSTGIVRPRNSPFSSRVFLIKKKDGG-----WRFCVDCRV 277
           + Y  A   + E+E  + EML+ G++R  NSP++S  +++ KK        +R  +D R 
Sbjct: 210 KQYPLAQTHEIEVENQVQEMLNQGLIRESNSPYNSPTWVVPKKPDASGANKYRVVIDYRK 269

Query: 278 LNQ----------------------------------------EEDVEKTAFRTHEGHYE 320
           LN+                                        EE + KTAF T  GHYE
Sbjct: 270 LNEITIPDRYPIPNMDEILGKLGKCQYFTTIDLAKGFHQIEMDEESISKTAFSTKSGHYE 329

[Close]

BLAST of Lag0005267 vs. ExPASy TrEMBL
Match: A0A5A7UT21 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold288G001910 PE=4 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 3.3e-45
Identity = 104/203 (51.23%), Postives = 124/203 (61.08%), Query Frame = 0


Query: 158 NRGRESNSRNEEANETKMPGEVLSLLGEYEDVFNLLEGLPSKRAVDHQIVMKEGHELVNV 217
           N G +S + ++  +E  +P  +  LL +Y DVFN    LP KR VDH+I+   G + +NV
Sbjct: 540 NEGADSKNTSQPGDEEGLP-MIQFLLHQYSDVFNSPTTLPPKRTVDHRILTIPGQKPINV 599

Query: 218 RPYKYAHAQKAEIEKLMMEMLSTGIVRPRNSPFSSRVFLIKKKDGGWRFCVDCRVLN--- 277
           RPYKY H QK EIEKL++EML TGI+RP +SPFSS V L+KKKDGGWRFCVD R LN   
Sbjct: 600 RPYKYGHQQKEEIEKLVIEMLQTGIIRPSHSPFSSPVLLVKKKDGGWRFCVDYRKLNKIT 659

Query: 278 -------------------------------------QEEDVEKTAFRTHEGHYEFLVMP 321
                                                +EED+EKTAFRTHEGHYEFLVMP
Sbjct: 660 IADKFPIPVIEELLDELHGATVFSKLDLKSGYHQIRMKEEDIEKTAFRTHEGHYEFLVMP 719

[Close]

BLAST of Lag0005267 vs. ExPASy TrEMBL
Match: A0A5A7U4B9 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold63G002190 PE=4 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 9.7e-45
Identity = 102/204 (50.00%), Postives = 126/204 (61.76%), Query Frame = 0


Query: 156 TRNRGRESNSRNEEANETKMPGEVLSLLGEYEDVFNLLEGLPSKRAVDHQIVMKEGHELV 215
           T N  +ES +  ++ +E ++P  +  LL +Y DVF++ + LP KRAVDH+I    G + +
Sbjct: 476 TENDYKESKTPGQQGDEEELP-MIQFLLNQYSDVFDIPKTLPPKRAVDHRIFTMPGQKPI 535

Query: 216 NVRPYKYAHAQKAEIEKLMMEMLSTGIVRPRNSPFSSRVFLIKKKDGGWRFCVDCRVLN- 275
           NVRPYKY H Q+ EIEKL+ EML TGI+RP +SPFSS V L+KKKDGGWRFCVD R LN 
Sbjct: 536 NVRPYKYGHNQEEEIEKLVTEMLQTGIIRPSHSPFSSPVLLVKKKDGGWRFCVDYRKLNK 595

Query: 276 ---------------------------------------QEEDVEKTAFRTHEGHYEFLV 320
                                                  +EED+EKTAFRTHEGHYEF+V
Sbjct: 596 ITIADKFPIPVIEELLDELHGATVFSKLDLKSGYHQTRMKEEDIEKTAFRTHEGHYEFMV 655

[Close]

BLAST of Lag0005267 vs. ExPASy TrEMBL
Match: A0A5D3C7Y7 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G001000 PE=4 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 9.7e-45
Identity = 102/204 (50.00%), Postives = 126/204 (61.76%), Query Frame = 0


Query: 156 TRNRGRESNSRNEEANETKMPGEVLSLLGEYEDVFNLLEGLPSKRAVDHQIVMKEGHELV 215
           T N  +ES +  ++ +E ++P  +  LL +Y DVF++ + LP KRAVDH+I    G + +
Sbjct: 476 TENDYKESKTPGQQGDEEELP-MIQFLLNQYSDVFDIPKTLPPKRAVDHRIFTMPGQKPI 535

Query: 216 NVRPYKYAHAQKAEIEKLMMEMLSTGIVRPRNSPFSSRVFLIKKKDGGWRFCVDCRVLN- 275
           NVRPYKY H Q+ EIEKL+ EML TGI+RP +SPFSS V L+KKKDGGWRFCVD R LN 
Sbjct: 536 NVRPYKYGHNQEEEIEKLVTEMLQTGIIRPSHSPFSSPVLLVKKKDGGWRFCVDYRKLNK 595

Query: 276 ---------------------------------------QEEDVEKTAFRTHEGHYEFLV 320
                                                  +EED+EKTAFRTHEGHYEF+V
Sbjct: 596 ITIADKFPIPVIEELLDELHGATVFSKLDLKSGYHQTRMKEEDIEKTAFRTHEGHYEFMV 655

[Close]

BLAST of Lag0005267 vs. ExPASy TrEMBL
Match: A0A5A7VJU2 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold120G00290 PE=4 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 4.8e-44
Identity = 102/203 (50.25%), Postives = 122/203 (60.10%), Query Frame = 0


Query: 158 NRGRESNSRNEEANETKMPGEVLSLLGEYEDVFNLLEGLPSKRAVDHQIVMKEGHELVNV 217
           N  +ES    ++ +E  +P  +  LL +Y DVF++   LP KRAVDH+I    G + +NV
Sbjct: 435 NDYKESKKTGQQGDEEGLP-MIQFLLNQYSDVFDIPTTLPPKRAVDHRIFTMPGQKPINV 494

Query: 218 RPYKYAHAQKAEIEKLMMEMLSTGIVRPRNSPFSSRVFLIKKKDGGWRFCVDCRVLN--- 277
           RPYKY H QK EIEKL+ EML TGI+RP +SPFSS V L+KKKDGGWRFCVD   LN   
Sbjct: 495 RPYKYGHQQKEEIEKLVTEMLQTGIIRPSHSPFSSPVLLVKKKDGGWRFCVDYGKLNKIT 554

Query: 278 -------------------------------------QEEDVEKTAFRTHEGHYEFLVMP 321
                                                +EED+EKTAFRTHEGHYEF+VMP
Sbjct: 555 IADKFPIPVIEELLDELHGATVFSKLDLKSGYHQIRMKEEDIEKTAFRTHEGHYEFMVMP 614

[Close]

BLAST of Lag0005267 vs. ExPASy TrEMBL
Match: A0A5A7VK94 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold271G001740 PE=4 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 4.8e-44
Identity = 101/203 (49.75%), Postives = 123/203 (60.59%), Query Frame = 0


Query: 158 NRGRESNSRNEEANETKMPGEVLSLLGEYEDVFNLLEGLPSKRAVDHQIVMKEGHELVNV 217
           N   +S + ++  +E  +P  +  LL +Y DVFN    LP KR +DH+I+   G + +NV
Sbjct: 612 NEDADSKNTSQTGDEEGLP-MIQFLLHQYSDVFNSPTTLPPKRTIDHRILTLPGQKPINV 671

Query: 218 RPYKYAHAQKAEIEKLMMEMLSTGIVRPRNSPFSSRVFLIKKKDGGWRFCVDCRVLN--- 277
           RPYKY H QK EIEKL++EML TGI+RP +SPFSS V L+KKKDGGWRFCVD R LN   
Sbjct: 672 RPYKYGHQQKEEIEKLVIEMLQTGIIRPSHSPFSSPVLLVKKKDGGWRFCVDYRKLNKIT 731

Query: 278 -------------------------------------QEEDVEKTAFRTHEGHYEFLVMP 321
                                                +EED+EKTAFRTHEGHYEF+VMP
Sbjct: 732 IADKFPIPVIEELLDELHGATMFSKLDLKSGYHQIRMKEEDIEKTAFRTHEGHYEFVVMP 791

[Close]

BLAST of Lag0005267 vs. TAIR 10
Match: ATMG00850.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 42.7 bits (99), Expect = 6.3e-04
Identity = 17/39 (43.59%), Postives = 27/39 (69.23%), Query Frame = 0


Query: 226 QKAEIEKLMMEMLSTGIVRPRNSPFSSRVFLIKKKDGGW 265
           ++  ++  + EML   I++P  SP+SS V L++KKDGGW
Sbjct: 41  RRTRLKNWLGEMLEARIIQPSISPYSSPVLLVQKKDGGW 79

The following BLAST results are available for this feature:

BLAST of Lag0005267 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0056659.1	6.9e-45	51.23	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0048289.1	2.0e-44	50.00	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK07971.1	2.0e-44	50.00	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0065995.1	1.0e-43	50.25	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK28942.1 Ty3/gyp...	[more]
KAA0066816.1	1.0e-43	49.75	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of Lag0005267 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q99315	1.0e-14	32.90	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q7LHG5	1.0e-14	32.90	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
P04323	6.6e-14	30.26	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
Q8I7P9	9.5e-13	28.57	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast...	[more]
P20825	6.1e-12	30.61	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]

BLAST of Lag0005267 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UT21	3.3e-45	51.23	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7U4B9	9.7e-45	50.00	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3C7Y7	9.7e-45	50.00	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7VJU2	4.8e-44	50.25	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7VK94	4.8e-44	49.75	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]

BLAST of Lag0005267 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00850.1	6.3e-04	43.59	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 303..316 e-value: 6.7E-10 score: 40.6
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 197..276 e-value: 3.1E-21 score: 77.5
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 277..302 e-value: 6.7E-10 score: 40.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 159..173
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 139..176
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 171..272
None	No IPR available	PANTHER	PTHR24559:SF319	SUBFAMILY NOT NAMED	coord: 171..272
None	No IPR available	PANTHER	PTHR24559:SF319	SUBFAMILY NOT NAMED	coord: 275..318
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 275..318
None	No IPR available	CDD	cd01647	RT_LTR	coord: 241..321 e-value: 1.86484E-27 score: 103.829
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 182..318

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0005267.1	Lag0005267.1	mRNA