Lag0005226 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0005226
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionReverse transcriptase domain-containing protein
Locationchr6: 12286420 .. 12286881 (+)
RNA-Seq ExpressionLag0005226
SyntenyLag0005226
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGGCAAAAATTCGGGGTGACATAAATAAAGTTAAAGCCATGTTGCAAGATTTGTACAGTGGGCAACCCCTATGGGATTTTAGATTAATTACAATCATGGAGGAACGACTTGACAAAGCGTTGGAAGCAGAGGAAATTTATTGGAAACAACGATCTAGAGACAACTGGTTAAAATGGGGGGACAAAAATACTAAATGGTTCCATAAGAGCGCCTCCATGAGGAAAAGCCGTAATCTAATACAAGGAATCACGAATGATAGTGGGACATGGATTACAGATAGCCAACAACTGGATCAAACTTTCGTTGCTTACTTCCAAAACATGTTCACATCCATCGATCCAAGCGAAGTAGCGTTCGATACTGCTTTACAGGAGATAAGTTGTAAGGTGTCCAAGGAAATGGATGATAAATTACTAGCTTCGTTTGATCGAGCAGAAGTGATTCGCGCTGTGAAATAA

mRNA sequence

ATGTTGGCAAAAATTCGGGGTGACATAAATAAAGTTAAAGCCATGTTGCAAGATTTGTACAGTGGGCAACCCCTATGGGATTTTAGATTAATTACAATCATGGAGGAACGACTTGACAAAGCGTTGGAAGCAGAGGAAATTTATTGGAAACAACGATCTAGAGACAACTGGTTAAAATGGGGGGACAAAAATACTAAATGGTTCCATAAGAGCGCCTCCATGAGGAAAAGCCGTAATCTAATACAAGGAATCACGAATGATAGTGGGACATGGATTACAGATAGCCAACAACTGGATCAAACTTTCGTTGCTTACTTCCAAAACATGTTCACATCCATCGATCCAAGCGAAGTAGCGTTCGATACTGCTTTACAGGAGATAAGTTGTAAGGTGTCCAAGGAAATGGATGATAAATTACTAGCTTCGTTTGATCGAGCAGAAGTGATTCGCGCTGTGAAATAA

Coding sequence (CDS)

ATGTTGGCAAAAATTCGGGGTGACATAAATAAAGTTAAAGCCATGTTGCAAGATTTGTACAGTGGGCAACCCCTATGGGATTTTAGATTAATTACAATCATGGAGGAACGACTTGACAAAGCGTTGGAAGCAGAGGAAATTTATTGGAAACAACGATCTAGAGACAACTGGTTAAAATGGGGGGACAAAAATACTAAATGGTTCCATAAGAGCGCCTCCATGAGGAAAAGCCGTAATCTAATACAAGGAATCACGAATGATAGTGGGACATGGATTACAGATAGCCAACAACTGGATCAAACTTTCGTTGCTTACTTCCAAAACATGTTCACATCCATCGATCCAAGCGAAGTAGCGTTCGATACTGCTTTACAGGAGATAAGTTGTAAGGTGTCCAAGGAAATGGATGATAAATTACTAGCTTCGTTTGATCGAGCAGAAGTGATTCGCGCTGTGAAATAA

Protein sequence

MLAKIRGDINKVKAMLQDLYSGQPLWDFRLITIMEERLDKALEAEEIYWKQRSRDNWLKWGDKNTKWFHKSASMRKSRNLIQGITNDSGTWITDSQQLDQTFVAYFQNMFTSIDPSEVAFDTALQEISCKVSKEMDDKLLASFDRAEVIRAVK
Homology
BLAST of Lag0005226 vs. NCBI nr
Match: XP_022158772.1 (uncharacterized protein LOC111025237 [Momordica charantia])

HSP 1 Score: 119.4 bits (298), Expect = 2.7e-23
Identity = 60/137 (43.80%), Postives = 86/137 (62.77%), Query Frame = 0

Query: 17  QDLYSGQPLWDFRLITIMEERLDKALEAEEIYWKQRSRDNWLKWGDKNTKWFHKSASMRK 76
           + L S  PL DF +I  +E  L   LE EEI+WKQRSR++WLKWGD N KWFHK A+MRK
Sbjct: 122 EQLISPLPL-DFTIIHDIENDLAGLLELEEIFWKQRSREDWLKWGDCNFKWFHKKATMRK 181

Query: 77  SRNLIQGITNDSGTWITDSQQLDQTFVAYFQNMFTSIDPSEVAFDTALQEISCKVSKEMD 136
           S N I GI +  G W  + +++   F+ YFQ++FTS  P  +  D+    I  +++ E++
Sbjct: 182 SCNYIHGIEDQYGCWTEEPKEIGNIFITYFQDIFTSTSPLPLDIDSITTHIPTRITSEIN 241

Query: 137 DKLLASFDRAEVIRAVK 154
            +LLA +   E+  A+K
Sbjct: 242 AQLLAPYKYEEIEIAIK 257

BLAST of Lag0005226 vs. NCBI nr
Match: XP_023874626.1 (uncharacterized protein LOC111987155 [Quercus suber])

HSP 1 Score: 110.5 bits (275), Expect = 1.3e-20
Identity = 60/147 (40.82%), Postives = 89/147 (60.54%), Query Frame = 0

Query: 7   GDINKVKAMLQDLYSGQPLWDFRL-----ITIMEERLDKALEAEEIYWKQRSRDNWLKWG 66
           G++NK+    QD      + D  L     I  +++ +++ L  EEI WKQRSR  WL+ G
Sbjct: 97  GNVNKILRQKQDQLQQLEIIDGMLDKAMEIKTLKKEINETLTKEEIMWKQRSRALWLESG 156

Query: 67  DKNTKWFHKSASMRKSRNLIQGITNDSGTWITDSQQLDQTFVAYFQNMFTSIDPSEVAFD 126
           D+NTK+FH +AS R+ +N I G+ ND G W+ D + +D+  + YF  +F S +PS  +FD
Sbjct: 157 DRNTKFFHATASQRRRKNRIGGLLNDQGVWVEDQEGIDRIILDYFSTIFKSGNPS--SFD 216

Query: 127 TALQEISCKVSKEMDDKLLASFDRAEV 149
            +L  IS +VS+EM+  LLA F   EV
Sbjct: 217 KSLSAISSRVSEEMNGDLLAVFKAEEV 241

BLAST of Lag0005226 vs. NCBI nr
Match: XP_006491472.1 (uncharacterized protein LOC102626455 [Citrus sinensis])

HSP 1 Score: 108.6 bits (270), Expect = 4.8e-20
Identity = 51/119 (42.86%), Postives = 77/119 (64.71%), Query Frame = 0

Query: 34  MEERLDKALEAEEIYWKQRSRDNWLKWGDKNTKWFHKSASMRKSRNLIQGITNDSGTWIT 93
           +E+++   L  EE+YWKQRSR +WLK GDKNTK+FH  AS R+ +N I G+ +D G W+ 
Sbjct: 414 LEDQISNMLVDEEVYWKQRSRADWLKEGDKNTKFFHSKASARRRKNKIWGVEDDQGNWVD 473

Query: 94  DSQQLDQTFVAYFQNMFTSIDPSEVAFDTALQEISCKVSKEMDDKLLASFDRAEVIRAV 153
           D + ++  F  +FQ +FTS +PS+     AL+ +  KVS+EM+  L   F   ++ RA+
Sbjct: 474 DPEGIEGEFCGFFQQLFTSSNPSQTQISEALKGLLPKVSQEMNTHLEEPFTPEDITRAL 532

BLAST of Lag0005226 vs. NCBI nr
Match: XP_015380705.1 (uncharacterized protein LOC107174377 [Citrus sinensis])

HSP 1 Score: 108.2 bits (269), Expect = 6.3e-20
Identity = 57/145 (39.31%), Postives = 90/145 (62.07%), Query Frame = 0

Query: 9   INKVKAMLQDL-YSGQPLWDFRLITIMEERLDKALEAEEIYWKQRSRDNWLKWGDKNTKW 68
           ++K+ A L++L +SG+   +   I  ++  +   L  EEIYWKQRS  +WLK  DKNTK+
Sbjct: 19  LDKLVARLKELRFSGRQYSNGEEIKRVKRHIQNILIDEEIYWKQRSWVDWLKEVDKNTKY 78

Query: 69  FHKSASMRKSRNLIQGITNDSGTWITDSQQLDQTFVAYFQNMFTSIDPSEVAFDTALQEI 128
           FH  AS RK +N I GI +    WI   +++++   AYF N+F++  P +   D AL+EI
Sbjct: 79  FHAKASSRKRKNRIWGIEDSQRNWIVMGEEVERELCAYFANLFSTTRPDQNQLDAALEEI 138

Query: 129 SCKVSKEMDDKLLASFDRAEVIRAV 153
           + +V+KEM+D+L   F   E++ A+
Sbjct: 139 TLRVTKEMNDQLQQPFTEEEILEAL 163

BLAST of Lag0005226 vs. NCBI nr
Match: XP_015388020.1 (uncharacterized protein LOC107177951 [Citrus sinensis])

HSP 1 Score: 106.7 bits (265), Expect = 1.8e-19
Identity = 50/122 (40.98%), Postives = 79/122 (64.75%), Query Frame = 0

Query: 31  ITIMEERLDKALEAEEIYWKQRSRDNWLKWGDKNTKWFHKSASMRKSRNLIQGITNDSGT 90
           + ++E ++D  L  EEIYW+QRSR  WL+ GDKNTK+FH  AS RK +N I GI +++  
Sbjct: 184 VKLLERQIDDLLIDEEIYWRQRSRAVWLQEGDKNTKFFHSKASARKRKNWISGIVDENNR 243

Query: 91  WITDSQQLDQTFVAYFQNMFTSIDPSEVAFDTALQEISCKVSKEMDDKLLASFDRAEVIR 150
           W   ++ +++ F  Y+ N+FTS +PS+   + AL+ +  KVS EM+  L   F  A+++ 
Sbjct: 244 WSEKAEDIERMFCEYYHNLFTSTNPSQQHLELALRNMPHKVSAEMNSHLDQPFTEADILE 303

Query: 151 AV 153
           A+
Sbjct: 304 AL 305

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022158772.12.7e-2343.80uncharacterized protein LOC111025237 [Momordica charantia][more]
XP_023874626.11.3e-2040.82uncharacterized protein LOC111987155 [Quercus suber][more]
XP_006491472.14.8e-2042.86uncharacterized protein LOC102626455 [Citrus sinensis][more]
XP_015380705.16.3e-2039.31uncharacterized protein LOC107174377 [Citrus sinensis][more]
XP_015388020.11.8e-1940.98uncharacterized protein LOC107177951 [Citrus sinensis][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33710:SF24SUBFAMILY NOT NAMEDcoord: 27..153
NoneNo IPR availablePANTHERPTHR33710BNAC02G09200D PROTEINcoord: 27..153

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0005226.1Lag0005226.1mRNA