Lag0004961 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0004961
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionChloroquine-resistance transporter-like
Locationchr6: 9019485 .. 9020113 (+)
RNA-Seq ExpressionLag0004961
SyntenyLag0004961
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGATGCAGAAGATTGTGTTATCTTGAGATAAGCATATCCAAATCTGAGAATGGTCCATTAATTATCAGCCCTGGTCTCTTCTCTCTTCCATTCCACGGGACGAGTACTAGCTATTCCTTGAATCAACGTGTTAGCAACTCCCATTGGCTTGAATCGATTCCTCTGAATGATGAATTAACTTCTTTGACTCTTAATGAAATTCGGGTTTTGCATTCGAAAAGAAAAACGCCAAGCCAAAACTAATGGACATATGATCTATTGAATGCAGGTTGTGAAGGGGCTCCATTGCTTCCACTGCTTTACGTGATTACAAATTTGTCCTTCAACATAACTTTGCTCAGCTTGGTGAAGAAATCTTCGGCAGTCGTTGCTTCTCTTGTTGTGATGCTTTCAGGTTCTTTTCTTCTCTGTAGAATATATGAACTAATATTGGATAATGTTATTTCATATGCATGAGCTAAAGATTGGTCTTGTTGCCATTTGCAGTGCCAATTTCAATTTATATTCTATCACTTCCATTGCCATATCTACCTGAAGGCGCAAGCTTAAGCCCCCTCTTTCTCACGGGGAGTTTAATGCTTGTGTTGGGTCTTGCTTTTTACTACATTCCTCAGCGTTCAAAGTAA

mRNA sequence

ATGAGATGCAGAAGATTGTGTTATCTTGAGATAAGCATATCCAAATCTGAGAATGGTCCATTAATTATCAGCCCTGGTCTCTTCTCTCTTCCATTCCACGGGACGAGTTGTGAAGGGGCTCCATTGCTTCCACTGCTTTACGTGATTACAAATTTGTCCTTCAACATAACTTTGCTCAGCTTGGTGAAGAAATCTTCGGCAGTCGTTGCTTCTCTTGTTGTGATGCTTTCAGTGCCAATTTCAATTTATATTCTATCACTTCCATTGCCATATCTACCTGAAGGCGCAAGCTTAAGCCCCCTCTTTCTCACGGGGAGTTTAATGCTTGTGTTGGGTCTTGCTTTTTACTACATTCCTCAGCGTTCAAAGTAA

Coding sequence (CDS)

ATGAGATGCAGAAGATTGTGTTATCTTGAGATAAGCATATCCAAATCTGAGAATGGTCCATTAATTATCAGCCCTGGTCTCTTCTCTCTTCCATTCCACGGGACGAGTTGTGAAGGGGCTCCATTGCTTCCACTGCTTTACGTGATTACAAATTTGTCCTTCAACATAACTTTGCTCAGCTTGGTGAAGAAATCTTCGGCAGTCGTTGCTTCTCTTGTTGTGATGCTTTCAGTGCCAATTTCAATTTATATTCTATCACTTCCATTGCCATATCTACCTGAAGGCGCAAGCTTAAGCCCCCTCTTTCTCACGGGGAGTTTAATGCTTGTGTTGGGTCTTGCTTTTTACTACATTCCTCAGCGTTCAAAGTAA

Protein sequence

MRCRRLCYLEISISKSENGPLIISPGLFSLPFHGTSCEGAPLLPLLYVITNLSFNITLLSLVKKSSAVVASLVVMLSVPISIYILSLPLPYLPEGASLSPLFLTGSLMLVLGLAFYYIPQRSK
Homology
BLAST of Lag0004961 vs. NCBI nr
Match: KAG7020259.1 (Protein CLT2, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 151.0 bits (380), Expect = 6.8e-33
Identity = 80/91 (87.91%), Postives = 86/91 (94.51%), Query Frame = 0

Query: 33  HGTSCEGAPLLPLLYVITNLSFNITLLSLVKKSSAVVASLVVMLSVPISIYILSLPLPYL 92
           HG  C GAPLLPLLYVITNLSFNITLLSLVKKSSAV++SLVVMLSVP+SIYILSLPLPYL
Sbjct: 321 HGAGCGGAPLLPLLYVITNLSFNITLLSLVKKSSAVISSLVVMLSVPVSIYILSLPLPYL 380

Query: 93  PEGASLSPLFLTGSLMLVLGLAFYYIPQRSK 124
           P+GA+LSPLFLTGSLMLVLGLA YY PQR+K
Sbjct: 381 PQGATLSPLFLTGSLMLVLGLALYYSPQRTK 411

BLAST of Lag0004961 vs. NCBI nr
Match: XP_038885312.1 (protein CLT2, chloroplastic [Benincasa hispida])

HSP 1 Score: 149.1 bits (375), Expect = 2.6e-32
Identity = 81/86 (94.19%), Postives = 85/86 (98.84%), Query Frame = 0

Query: 37  CEGAPLLPLLYVITNLSFNITLLSLVKKSSAVVASLVVMLSVPISIYILSLPLPYLPEGA 96
           CEGAPLLPLLYVITNLSFNIT+LS+VKKSSAVVASLVVMLSVP+SIYILSLPLPYLP+GA
Sbjct: 354 CEGAPLLPLLYVITNLSFNITVLSVVKKSSAVVASLVVMLSVPVSIYILSLPLPYLPQGA 413

Query: 97  SLSPLFLTGSLMLVLGLAFYYIPQRS 123
           SLSPLFLTGSLMLVLGLAFYYIPQ S
Sbjct: 414 SLSPLFLTGSLMLVLGLAFYYIPQPS 439

BLAST of Lag0004961 vs. NCBI nr
Match: XP_022132091.1 (protein CLT2, chloroplastic-like [Momordica charantia])

HSP 1 Score: 149.1 bits (375), Expect = 2.6e-32
Identity = 81/87 (93.10%), Postives = 85/87 (97.70%), Query Frame = 0

Query: 37  CEGAPLLPLLYVITNLSFNITLLSLVKKSSAVVASLVVMLSVPISIYILSLPLPYLPEGA 96
           C+GAPLLPLLYVITNL+FNITLLSLVKK SAVVASL+VMLSVPISIYILSLPLPYLPEGA
Sbjct: 342 CKGAPLLPLLYVITNLAFNITLLSLVKKFSAVVASLLVMLSVPISIYILSLPLPYLPEGA 401

Query: 97  SLSPLFLTGSLMLVLGLAFYYIPQRSK 124
           SLSPLFLTGSL+LVLGL FYYIPQRSK
Sbjct: 402 SLSPLFLTGSLLLVLGLVFYYIPQRSK 428

BLAST of Lag0004961 vs. NCBI nr
Match: XP_023001859.1 (protein CLT2, chloroplastic [Cucurbita maxima])

HSP 1 Score: 147.5 bits (371), Expect = 7.5e-32
Identity = 79/87 (90.80%), Postives = 85/87 (97.70%), Query Frame = 0

Query: 37  CEGAPLLPLLYVITNLSFNITLLSLVKKSSAVVASLVVMLSVPISIYILSLPLPYLPEGA 96
           C GAPLLPLLYVITNLSFNITLLSLVKKSSAV++SLVVMLSVP+SIYILSLPLPYLP+GA
Sbjct: 340 CGGAPLLPLLYVITNLSFNITLLSLVKKSSAVISSLVVMLSVPVSIYILSLPLPYLPQGA 399

Query: 97  SLSPLFLTGSLMLVLGLAFYYIPQRSK 124
           +LSPLFLTGSLMLVLGLA YYIPQR+K
Sbjct: 400 TLSPLFLTGSLMLVLGLALYYIPQRAK 426

BLAST of Lag0004961 vs. NCBI nr
Match: XP_023537000.1 (protein CLT2, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 145.2 bits (365), Expect = 3.7e-31
Identity = 78/87 (89.66%), Postives = 84/87 (96.55%), Query Frame = 0

Query: 37  CEGAPLLPLLYVITNLSFNITLLSLVKKSSAVVASLVVMLSVPISIYILSLPLPYLPEGA 96
           C GAPLLPLLYVITNLSFNITLLSLVKKSSAV++SLVVMLSVP+SIYILSLPLPYLP+GA
Sbjct: 340 CGGAPLLPLLYVITNLSFNITLLSLVKKSSAVISSLVVMLSVPVSIYILSLPLPYLPQGA 399

Query: 97  SLSPLFLTGSLMLVLGLAFYYIPQRSK 124
           +LSPLFLTGSLMLVLGLA YY PQR+K
Sbjct: 400 TLSPLFLTGSLMLVLGLALYYSPQRTK 426

BLAST of Lag0004961 vs. ExPASy Swiss-Prot
Match: A1L4X0 (Protein CLT2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CLT2 PE=2 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 3.6e-21
Identity = 54/85 (63.53%), Postives = 70/85 (82.35%), Query Frame = 0

Query: 35  TSCEGAPLLPLLYVITNLSFNITLLSLVKKSSAVVASLVVMLSVPISIYILSLPLPYLPE 94
           + C+GAP+LPLLY+ TNL+FNI+LL LVK SSA+V+SL +MLSVP+++YI+S PLPYLP 
Sbjct: 336 SGCDGAPILPLLYISTNLAFNISLLHLVKISSAIVSSLTMMLSVPLAVYIMSKPLPYLPG 395

Query: 95  GASLSPLFLTGSLMLVLGLAFYYIP 120
           G+SLS  F  G ++LVLGL  Y IP
Sbjct: 396 GSSLSSNFTMGCIVLVLGLLLYNIP 420

BLAST of Lag0004961 vs. ExPASy Swiss-Prot
Match: Q058P6 (Protein CLT1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CLT1 PE=2 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 8.6e-15
Identity = 42/82 (51.22%), Postives = 64/82 (78.05%), Query Frame = 0

Query: 35  TSCEGAPLLPLLYVITNLSFNITLLSLVKKSSAVVASLVVMLSVPISIYILSLPLPYLPE 94
           T CEGAPLLP+++V+ N+++NI+LL L+K SSAVV+SL   +SVPI++Y  +LPLPYL  
Sbjct: 347 TGCEGAPLLPVMFVMMNMAYNISLLRLIKISSAVVSSLASTVSVPIAVYCFTLPLPYLGV 406

Query: 95  GASLSPLFLTGSLMLVLGLAFY 117
            ++L   F+ G+++LV+G+  Y
Sbjct: 407 ASTLPRGFVAGTIILVVGMLLY 428

BLAST of Lag0004961 vs. ExPASy Swiss-Prot
Match: Q8RWL5 (Protein CLT3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CLT3 PE=2 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.2e-13
Identity = 41/80 (51.25%), Postives = 60/80 (75.00%), Query Frame = 0

Query: 37  CEGAPLLPLLYVITNLSFNITLLSLVKKSSAVVASLVVMLSVPISIYILSLPLPYLPEGA 96
           C+GAP LPLL+VI N+ +NI LL L+K SSAVV+ L   +SVPI++++ ++PLPYL   +
Sbjct: 351 CDGAPFLPLLFVIMNIGYNIALLRLLKISSAVVSCLASTVSVPIAVFLFTMPLPYLGVAS 410

Query: 97  SLSPLFLTGSLMLVLGLAFY 117
           SL   F+ G+++LVLG+  Y
Sbjct: 411 SLPKGFMGGTIILVLGMILY 430

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG7020259.16.8e-3387.91Protein CLT2, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_038885312.12.6e-3294.19protein CLT2, chloroplastic [Benincasa hispida][more]
XP_022132091.12.6e-3293.10protein CLT2, chloroplastic-like [Momordica charantia][more]
XP_023001859.17.5e-3290.80protein CLT2, chloroplastic [Cucurbita maxima][more]
XP_023537000.13.7e-3189.66protein CLT2, chloroplastic-like [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
A1L4X03.6e-2163.53Protein CLT2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CLT2 PE=2 SV=1[more]
Q058P68.6e-1551.22Protein CLT1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CLT1 PE=2 SV=1[more]
Q8RWL51.2e-1351.25Protein CLT3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CLT3 PE=2 SV=1[more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013936Chloroquine-resistance transporter-likePFAMPF08627CRT-likecoord: 35..116
e-value: 7.1E-7
score: 28.5
IPR013936Chloroquine-resistance transporter-likePANTHERPTHR31326PROTEIN CLT2, CHLOROPLASTICcoord: 35..122
NoneNo IPR availablePANTHERPTHR31326:SF1PROTEIN CLT2, CHLOROPLASTICcoord: 35..122

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0004961.1Lag0004961.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane