Lag0004718 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0004718
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Inorganic diphosphatase
Location	chr6: 6359333 .. 6360002 (-)
RNA-Seq Expression	Lag0004718
Synteny	Lag0004718

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGCAAGAAAAGACGATCTTGTGCTATACTCCGGAGATCTCTTTCCTACCGAGGCATGCAAACTTCCATTGTGTCCCAAATCACACTACATGAATCGAAAGGGGAAGCCTCTCAATCATCAGTGCAGGTTGGTGCGGTTTTACGAAGAGCTTTGCTGTCACTTCTTAAGGTTACCTGTTGTGTCATACACTTCTTACATTGTTTTCCACACTTCATACCTCCTATTTCTTATTAAGGTAAGGTAAAGGGACAAACATGGTGGGGTAGGAGCATTTTGTCAAAAATCTTTTTGGTTTGTCCAAATCAGTTTTATGTCCACCGAGTCGCACAACGTTTTAACCAAAAGAACTTCTTGCGCAATTCATGTCTTATGTTTTTATGACCAGAAATTGTTTTTTGATTTCCATTTCAAATTGTTCTCTAGACTTTTTTATCAATATGAGGTGATTGTAACACAATATAGTTGACTCGTGACTCAAGCAATCCAATCTTCATGCTATCTTCATGCTATCAAACAAAGGTTTTCCACGAAACAGCAGTGTGCATACATAGATTAACTGCTTATAGAATTAACTCAGAAATCTGTTTAGACACTGACCTGCTTTTGTGGATGATATGCAGCAGCAGATGGCCAAAACTATTCCTGCTTGCTCCAGCAAAGAATAA

mRNA sequence

ATGGCAGCAAGAAAAGACGATCTTGTGCTATACTCCGGAGATCTCTTTCCTACCGAGGCATGCAAACTTCCATTGTGTCCCAAATCACACTACATGAATCGAAAGGGGAAGCCTCTCAATCATCAGTGCAGGTTGGTGCGGTTTTACGAAGAGCTTTGCTGTCACTTCTTAAGGTTACCTGTTGTGTCATACACTTCTTACATTGTTTTCCACACTTCATACCTCCTATTTCTTATTAAGCAGCAGATGGCCAAAACTATTCCTGCTTGCTCCAGCAAAGAATAA

Coding sequence (CDS)

ATGGCAGCAAGAAAAGACGATCTTGTGCTATACTCCGGAGATCTCTTTCCTACCGAGGCATGCAAACTTCCATTGTGTCCCAAATCACACTACATGAATCGAAAGGGGAAGCCTCTCAATCATCAGTGCAGGTTGGTGCGGTTTTACGAAGAGCTTTGCTGTCACTTCTTAAGGTTACCTGTTGTGTCATACACTTCTTACATTGTTTTCCACACTTCATACCTCCTATTTCTTATTAAGCAGCAGATGGCCAAAACTATTCCTGCTTGCTCCAGCAAAGAATAA

Protein sequence

MAARKDDLVLYSGDLFPTEACKLPLCPKSHYMNRKGKPLNHQCRLVRFYEELCCHFLRLPVVSYTSYIVFHTSYLLFLIKQQMAKTIPACSSKE

Homology

[Close]

BLAST of Lag0004718 vs. NCBI nr
Match: OVA10604.1 (hypothetical protein BVC80_6627g2 [Macleaya cordata])

HSP 1 Score: 100.9 bits (250), Expect = 6.1e-18
Identity = 57/90 (63.33%), Postives = 60/90 (66.67%), Query Frame = 0


Query: 1  MAARKDDLVLYSGDLFPTEACKLPLCPKSHYMNRKGKPLNHQCRL---VRFYE------- 60
          MAARK DLVLYSGDLFPTEA KLP CP+SH +NRKGKP +    L   VRFYE       
Sbjct: 1  MAARKGDLVLYSGDLFPTEARKLPSCPRSHSVNRKGKPTHPSAPLVDAVRFYEASKHSSL 60

Query: 61 -----ELCCHFLRLPVVSYTSYIVFHTSYL 76
               E C H LRLPVVSYTS IV H SYL
Sbjct: 61 ALINQEFCRHSLRLPVVSYTSCIVSHASYL 90

[Close]

BLAST of Lag0004718 vs. NCBI nr
Match: KAF5176196.1 (hypothetical protein FRX31_034217 [Thalictrum thalictroides] >PIA32667.1 hypothetical protein AQUCO_04400097v1 [Aquilegia coerulea])

HSP 1 Score: 76.3 bits (186), Expect = 1.6e-10
Identity = 43/80 (53.75%), Postives = 49/80 (61.25%), Query Frame = 0


Query: 1  MAARKDDLVLYSGDLFPTEACKLPLCPKSHYMNRKGKPLNHQCRL---VRFYEE------ 60
          MAARK DLVLYSGDLFPTEA KLP CP+SH +NRKGKP +    L   VRFYE       
Sbjct: 1  MAARKGDLVLYSGDLFPTEARKLPSCPRSHSLNRKGKPTHPSAPLVDAVRFYEASKHSSL 60

Query: 61 LCCHFLRLPVVSYTSYIVFH 72
             H L LP +   +  + H
Sbjct: 61 ALIHLLVLPPLLKVTCCIIH 80

[Close]

BLAST of Lag0004718 vs. NCBI nr
Match: CAG1865667.1 (unnamed protein product [Musa acuminata subsp. malaccensis])

HSP 1 Score: 75.9 bits (185), Expect = 2.1e-10
Identity = 51/93 (54.84%), Postives = 55/93 (59.14%), Query Frame = 0


Query: 1  MAARKDDLVLYSGDLFPTEACKLPLCPKSHYMNRKGKPLNHQCRL---VRFYE------- 60
          MAARK DLVLYSGDL PTEA KLP C +SH +NRKGKP +    L   VRF E       
Sbjct: 1  MAARKGDLVLYSGDLLPTEARKLPSCLRSHSVNRKGKPTHQFAPLVDVVRFDEASKHSSL 60

Query: 61 -----ELC-CHFLRL-PVVSYTSYIVFHTSYLL 77
               E C  H LRL   V YT  I+FH SYLL
Sbjct: 61 ALINVEFCYLHSLRLHDDVIYTDCILFHASYLL 93

[Close]

BLAST of Lag0004718 vs. NCBI nr
Match: PPR89037.1 (hypothetical protein GOBAR_AA31657 [Gossypium barbadense] >TYH76667.1 hypothetical protein ES332_D04G101500v1 [Gossypium tomentosum])

HSP 1 Score: 73.2 bits (178), Expect = 1.4e-09
Identity = 34/46 (73.91%), Postives = 37/46 (80.43%), Query Frame = 0


Query: 1  MAARKDDLVLYSGDLFPTEACKLPLCPKSHYMNRKGKPLNHQCRLV 47
          MAARK DLVLYSGDLFPTEA KLP CP+SH +NRKGKP +    LV
Sbjct: 21 MAARKGDLVLYSGDLFPTEARKLPSCPRSHSVNRKGKPTHPSAPLV 66

[Close]

BLAST of Lag0004718 vs. NCBI nr
Match: GFS28502.1 (hypothetical protein Acr_00g0002190 [Actinidia rufa])

HSP 1 Score: 73.2 bits (178), Expect = 1.4e-09
Identity = 34/46 (73.91%), Postives = 37/46 (80.43%), Query Frame = 0


Query: 1  MAARKDDLVLYSGDLFPTEACKLPLCPKSHYMNRKGKPLNHQCRLV 47
          MAARK DLVLYSGDLFPTEA KLP CP+SH +NRKGKP +    LV
Sbjct: 29 MAARKGDLVLYSGDLFPTEARKLPSCPRSHSVNRKGKPTHPSAPLV 74

The following BLAST results are available for this feature:

BLAST of Lag0004718 vs. NCBI nr


Match Name	E-value	Identity	Description
OVA10604.1	6.1e-18	63.33	hypothetical protein BVC80_6627g2 [Macleaya cordata]	[more]
KAF5176196.1	1.6e-10	53.75	hypothetical protein FRX31_034217 [Thalictrum thalictroides] >PIA32667.1 hypothe...	[more]
CAG1865667.1	2.1e-10	54.84	unnamed protein product [Musa acuminata subsp. malaccensis]	[more]
PPR89037.1	1.4e-09	73.91	hypothetical protein GOBAR_AA31657 [Gossypium barbadense] >TYH76667.1 hypothetic...	[more]
GFS28502.1	1.4e-09	73.91	hypothetical protein Acr_00g0002190 [Actinidia rufa]	[more]

BLAST of Lag0004718 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 90..94

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0004718.1	Lag0004718.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane
cellular_component	GO:0005739	mitochondrion