Lag0004332 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0004332
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr6: 3006024 .. 3006485 (+)
RNA-Seq ExpressionLag0004332
SyntenyLag0004332
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCGGAGGCGGAGGCGTAGCCGCCGAGAGCCAAGAAGCCGGATCCCTGGGAGCTCAAGAGAGAAGTGAAGGTCCCAGGGGCGGGGATGTTGTCGTTGAGATTGACATTGATGTCATTGGCGAGGGATGGAGGGAGGACGGAAACAGAGGAGGAAGAGGAAACAGAGGTGGAGGAGGAAACAGAGGTGGAGGCAGAGGAGGGGAGGCTATGGTAACGAGAGCGCTTGGAGTTTTTGCGGGAGCCGCCGCCGACGGGGACGTCGCGGAGAGTGCCGCCGTGGGTCCAGTAGCGGCGGCAGGACTTGCAGAAGTGGCGGGGCTGGGAGAGGTTGTAGTTGTTGTAGTAGCAGAATTTGGTGTTGAGAGAGTCGCAGCGAGGGCAGGGGAGAGGGTCGGACTGGGGCGGGGGAGGGAAGGACATGGAGTGTTGAGGCCTGATGGGTCTGGTGGGATTGGGTGA

mRNA sequence

ATGGGCGGAGGCGGAGGCGTAGCCGCCGAGAGCCAAGAAGCCGGATCCCTGGGAGCTCAAGAGAGAAGTGAAGGTCCCAGGGGCGGGGATGTTGTCGTTGAGATTGACATTGATGTCATTGGCGAGGGATGGAGGGAGGACGGAAACAGAGGAGGAAGAGGAAACAGAGGTGGAGGAGGAAACAGAGGTGGAGGCAGAGGAGGGGAGGCTATGGTAACGAGAGCGCTTGGAGTTTTTGCGGGAGCCGCCGCCGACGGGGACGTCGCGGAGAGTGCCGCCGTGGGTCCAGTAGCGGCGGCAGGACTTGCAGAAGTGGCGGGGCTGGGAGAGGTTGTAGTTGTTGTAGTAGCAGAATTTGGTGTTGAGAGAGTCGCAGCGAGGGCAGGGGAGAGGGTCGGACTGGGGCGGGGGAGGGAAGGACATGGAGTGTTGAGGCCTGATGGGTCTGGTGGGATTGGGTGA

Coding sequence (CDS)

ATGGGCGGAGGCGGAGGCGTAGCCGCCGAGAGCCAAGAAGCCGGATCCCTGGGAGCTCAAGAGAGAAGTGAAGGTCCCAGGGGCGGGGATGTTGTCGTTGAGATTGACATTGATGTCATTGGCGAGGGATGGAGGGAGGACGGAAACAGAGGAGGAAGAGGAAACAGAGGTGGAGGAGGAAACAGAGGTGGAGGCAGAGGAGGGGAGGCTATGGTAACGAGAGCGCTTGGAGTTTTTGCGGGAGCCGCCGCCGACGGGGACGTCGCGGAGAGTGCCGCCGTGGGTCCAGTAGCGGCGGCAGGACTTGCAGAAGTGGCGGGGCTGGGAGAGGTTGTAGTTGTTGTAGTAGCAGAATTTGGTGTTGAGAGAGTCGCAGCGAGGGCAGGGGAGAGGGTCGGACTGGGGCGGGGGAGGGAAGGACATGGAGTGTTGAGGCCTGATGGGTCTGGTGGGATTGGGTGA

Protein sequence

MGGGGGVAAESQEAGSLGAQERSEGPRGGDVVVEIDIDVIGEGWREDGNRGGRGNRGGGGNRGGGRGGEAMVTRALGVFAGAAADGDVAESAAVGPVAAAGLAEVAGLGEVVVVVVAEFGVERVAARAGERVGLGRGREGHGVLRPDGSGGIG
Homology
[Close]
BLAST of Lag0004332 vs. NCBI nr
Match: KAF5468341.1 (hypothetical protein F2P56_012499 [Juglans regia])

HSP 1 Score: 68.2 bits (165), Expect = 7.2e-08
Identity = 61/108 (56.48%), Postives = 67/108 (62.04%), Query Frame = 0 

Query: 43  GWREDGNR-GGRGNRGGGGNRGGGRGGEAMVTRALG-VFAGAAADGDVAESAAVGPVAAA 102
           G   DG R  G    GG   RGGGR   +   RALG   AGA  DGDVA+ AA+GP+AAA
Sbjct: 6   GQNRDGVRVHGLAGHGGRRRRGGGRRSTSGRARALGDALAGATTDGDVAKGAALGPIAAA 65

Query: 103 GLAEVAGLGEVVVVVVAEFGVERVAARAGERVGLGRGREGHGVLRPDG 149
           GLAEVAGLGEVVVVVVAE G    AARA ER+ L   R    +L P G
Sbjct: 66  GLAEVAGLGEVVVVVVAELGGGGTAARARERLSLRWWRVREALLDPHG 113

[Close]
BLAST of Lag0004332 vs. NCBI nr
Match: KAG0452199.1 (hypothetical protein HPP92_026076 [Vanilla planifolia])

HSP 1 Score: 60.8 bits (146), Expect = 1.1e-05
Identity = 55/97 (56.70%), Postives = 58/97 (59.79%), Query Frame = 0 

Query: 55  NRGGGGNRGGGRGGEAMVTRALGVFAGAAADGDVAESAAVGPVAAAGLAEVAGLGEVVVV 114
           N  GGG RG   GG  +  R       AAADGDVAE AA GPVAAA LAEVAGL E VVV
Sbjct: 51  NEVGGGERGDEGGG--LAVRPRRDLQAAAADGDVAEGAAFGPVAAAALAEVAGLCEAVVV 110

Query: 115 VVAEFGVERVAARAGERVGLGRGREGHGVLRPDGSGG 152
           VVAE GV RVAARA   V         G  RP+G+ G
Sbjct: 111 VVAELGVRRVAARAARGVLDALPPSSFGHRRPEGAVG 145

[Close]
BLAST of Lag0004332 vs. NCBI nr
Match: PON82987.1 (hypothetical protein TorRG33x02_211930 [Trema orientale])

HSP 1 Score: 56.2 bits (134), Expect = 2.8e-04
Identity = 35/44 (79.55%), Postives = 38/44 (86.36%), Query Frame = 0 

Query: 84  ADGDVAESAAVGPVAAAGLAEVAGLGEVVVVVVAEFGVERVAAR 128
           ADG+VAE AA GPVAAA LAE+AGL EVVVVVVAE GVER+A R
Sbjct: 81  ADGNVAEDAAFGPVAAAVLAEMAGLREVVVVVVAELGVERIATR 124

The following BLAST results are available for this feature:
BLAST of Lag0004332 vs. NCBI nr
Match NameE-valueIdentityDescription
KAF5468341.17.2e-0856.48hypothetical protein F2P56_012499 [Juglans regia][more]
KAG0452199.11.1e-0556.70hypothetical protein HPP92_026076 [Vanilla planifolia][more]
PON82987.12.8e-0479.55hypothetical protein TorRG33x02_211930 [Trema orientale][more]
BLAST of Lag0004332 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 43..67
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..30

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0004332.1Lag0004332.1mRNA