Lag0004145 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0004145
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionProtein of unknown function (DUF3511)
Locationchr6: 1415921 .. 1416226 (+)
RNA-Seq ExpressionLag0004145
SyntenyLag0004145
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGCTGACAGAAGACCTTCTTATGGAAGCTCTTCTCTGCAGATTGAAAGCTATTATGGCCCTCCAAGACCCCAAACCCAAAGCCAGATTCCAGCCAAAGAACTGAATCTCAACAAGAAAGGCAAAAGCACTTCTGGGTCTGCTTCCAAATCATGGAGGTTTTCAGACCCTGAGTTTCAGAGGAAGAAGAGGGTTGCCAGTTACAAGATGTATTCTGTTGAAGGCAAGATGAAGGGCTCCTTTAGAAAGAGCTTCAGATGGCTTAAAGATAAGTACACACAAATGCTTTATGGTTGGTGGTGA

mRNA sequence

ATGGATGCTGACAGAAGACCTTCTTATGGAAGCTCTTCTCTGCAGATTGAAAGCTATTATGGCCCTCCAAGACCCCAAACCCAAAGCCAGATTCCAGCCAAAGAACTGAATCTCAACAAGAAAGGCAAAAGCACTTCTGGGTCTGCTTCCAAATCATGGAGGTTTTCAGACCCTGAGTTTCAGAGGAAGAAGAGGGTTGCCAGTTACAAGATGTATTCTGTTGAAGGCAAGATGAAGGGCTCCTTTAGAAAGAGCTTCAGATGGCTTAAAGATAAGTACACACAAATGCTTTATGGTTGGTGGTGA

Coding sequence (CDS)

ATGGATGCTGACAGAAGACCTTCTTATGGAAGCTCTTCTCTGCAGATTGAAAGCTATTATGGCCCTCCAAGACCCCAAACCCAAAGCCAGATTCCAGCCAAAGAACTGAATCTCAACAAGAAAGGCAAAAGCACTTCTGGGTCTGCTTCCAAATCATGGAGGTTTTCAGACCCTGAGTTTCAGAGGAAGAAGAGGGTTGCCAGTTACAAGATGTATTCTGTTGAAGGCAAGATGAAGGGCTCCTTTAGAAAGAGCTTCAGATGGCTTAAAGATAAGTACACACAAATGCTTTATGGTTGGTGGTGA

Protein sequence

MDADRRPSYGSSSLQIESYYGPPRPQTQSQIPAKELNLNKKGKSTSGSASKSWRFSDPEFQRKKRVASYKMYSVEGKMKGSFRKSFRWLKDKYTQMLYGWW
Homology
BLAST of Lag0004145 vs. NCBI nr
Match: KAG7029545.1 (hypothetical protein SDJN02_07884, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 152.5 bits (384), Expect = 1.9e-33
Identity = 80/101 (79.21%), Postives = 86/101 (85.15%), Query Frame = 0

Query: 1   MDADRRPSYGSSSLQIESYYGPPRPQTQSQIPAKELNLNKKGKSTSGSASKSWRFSDPEF 60
           MD DRR SYGSSS+QIESYYGPP+    SQIP       KK K +SGS+SKS++FSDPEF
Sbjct: 1   MDDDRRGSYGSSSMQIESYYGPPK----SQIP------GKKDKRSSGSSSKSFKFSDPEF 60

Query: 61  QRKKRVASYKMYSVEGKMKGSFRKSFRWLKDKYTQMLYGWW 102
           QRKKRVASYKMYSVEGKMKGSFRKSFRWLKDKYTQMLYGWW
Sbjct: 61  QRKKRVASYKMYSVEGKMKGSFRKSFRWLKDKYTQMLYGWW 91

BLAST of Lag0004145 vs. NCBI nr
Match: KAG6598609.1 (hypothetical protein SDJN03_08387, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 146.4 bits (368), Expect = 1.4e-31
Identity = 77/97 (79.38%), Postives = 83/97 (85.57%), Query Frame = 0

Query: 5   RRPSYGSSSLQIESYYGPPRPQTQSQIPAKELNLNKKGKSTSGSASKSWRFSDPEFQRKK 64
           RR SYGSSS+QIESYYGPP+    SQIP       KK K +SGS+SKS++FSDPEFQRKK
Sbjct: 406 RRGSYGSSSMQIESYYGPPK----SQIP------GKKDKRSSGSSSKSFKFSDPEFQRKK 465

Query: 65  RVASYKMYSVEGKMKGSFRKSFRWLKDKYTQMLYGWW 102
           RVASYKMYSVEGKMKGSFRKSFRWLKDKYTQMLYGWW
Sbjct: 466 RVASYKMYSVEGKMKGSFRKSFRWLKDKYTQMLYGWW 492

BLAST of Lag0004145 vs. NCBI nr
Match: KAA0064729.1 (hypothetical protein E6C27_scaffold82G00330 [Cucumis melo var. makuwa])

HSP 1 Score: 145.2 bits (365), Expect = 3.1e-31
Identity = 79/103 (76.70%), Postives = 86/103 (83.50%), Query Frame = 0

Query: 1   MDADRRPSY-GSSSLQIESYYGPPRPQTQSQIPAKELNLNKKGKSTSGSASKSWRF-SDP 60
           MD DRR SY GSSS++IE YYG   P ++SQ+        KKGKSTSGS+SKSWRF +DP
Sbjct: 1   MDDDRRSSYGGSSSMEIEKYYG---PSSKSQVSV------KKGKSTSGSSSKSWRFVADP 60

Query: 61  EFQRKKRVASYKMYSVEGKMKGSFRKSFRWLKDKYTQMLYGWW 102
           EFQRKKRVASYKMYSVEGKMKGSFRKSFRWLKDKYTQMLYGWW
Sbjct: 61  EFQRKKRVASYKMYSVEGKMKGSFRKSFRWLKDKYTQMLYGWW 94

BLAST of Lag0004145 vs. NCBI nr
Match: XP_038884184.1 (uncharacterized protein LOC120075092 [Benincasa hispida])

HSP 1 Score: 143.3 bits (360), Expect = 1.2e-30
Identity = 74/102 (72.55%), Postives = 82/102 (80.39%), Query Frame = 0

Query: 1   MDADRRPSYGSSSLQIESYYGPPRPQTQSQIPAKELNLNKKGKSTSGSASKSWRF-SDPE 60
           MD DRR  YG+SS++I+ YYGPP+ Q             KKGKS SGS+SKSWRF +DPE
Sbjct: 1   MDDDRRSYYGNSSMEIQKYYGPPKIQESV----------KKGKSISGSSSKSWRFVADPE 60

Query: 61  FQRKKRVASYKMYSVEGKMKGSFRKSFRWLKDKYTQMLYGWW 102
           FQRKKRVASYKMYSVEGKMKGSFRKSF+WLKDKYTQMLYGWW
Sbjct: 61  FQRKKRVASYKMYSVEGKMKGSFRKSFKWLKDKYTQMLYGWW 92

BLAST of Lag0004145 vs. NCBI nr
Match: XP_024019973.1 (uncharacterized protein LOC21384218 [Morus notabilis] >EXB55657.1 hypothetical protein L484_000591 [Morus notabilis])

HSP 1 Score: 134.0 bits (336), Expect = 7.0e-28
Identity = 72/112 (64.29%), Postives = 85/112 (75.89%), Query Frame = 0

Query: 2   DADRRPSYGSSSLQIESYYGPPR----PQTQSQIPAKELNLN-------KKGKSTSG-SA 61
           D +R  SYGS  +QI++YYGPPR      TQ+Q+   ++N N       KKGK+ SG S+
Sbjct: 3   DCNRSRSYGSGMMQIDNYYGPPRSFSTSHTQTQM-GNDINNNNIRDLKMKKGKNASGSSS 62

Query: 62  SKSWRFSDPEFQRKKRVASYKMYSVEGKMKGSFRKSFRWLKDKYTQMLYGWW 102
           SK W F DPEFQRKKRVASYKMYSVEGK+KGSFRKSFRWLKDKYTQ++YGWW
Sbjct: 63  SKPWSFGDPEFQRKKRVASYKMYSVEGKVKGSFRKSFRWLKDKYTQVVYGWW 113

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG7029545.11.9e-3379.21hypothetical protein SDJN02_07884, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6598609.11.4e-3179.38hypothetical protein SDJN03_08387, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAA0064729.13.1e-3176.70hypothetical protein E6C27_scaffold82G00330 [Cucumis melo var. makuwa][more]
XP_038884184.11.2e-3072.55uncharacterized protein LOC120075092 [Benincasa hispida][more]
XP_024019973.17.0e-2864.29uncharacterized protein LOC21384218 [Morus notabilis] >EXB55657.1 hypothetical p... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR021899Protein of unknown function DUF3511PFAMPF12023DUF3511coord: 55..99
e-value: 2.9E-25
score: 87.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..56
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 8..55
NoneNo IPR availablePANTHERPTHR33193:SF47SUBFAMILY NOT NAMEDcoord: 9..100
NoneNo IPR availablePANTHERPTHR33193DOMAIN PROTEIN, PUTATIVE (DUF3511)-RELATEDcoord: 9..100

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0004145.1Lag0004145.1mRNA