Lag0003141 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0003141
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	transcription initiation factor TFIID subunit 9
Location	chr4: 48384275 .. 48386169 (+)
RNA-Seq Expression	Lag0003141
Synteny	Lag0003141

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTCGTGGAAGTGGCGGTGGATATGACAACCAAAACACTACTTTCTCGCCCGAAGCTCGACCTTCACAAGCGGGTATGTCGTTGTTTTTCTTCTTTCCGTTGATGATCCCATCGAGCTCTTACTTCTTTTCGAGTTTTATTCAATTTTTCTCGGTATTTTGAGGTTTTAGGGCAACTGATTTTGAGTTGTTTAGCTCGTAGATCGGGGGGAAGATGTGAATTTGGGGTTTCTTTATGATTTTCCATTTTCGAATTGCTGAATTATGGCTCTCGATACAAAATGGTAGTATGAAATTTAGAAATTGGTTTTCTGGAAGGGTTGAATTTGGGGGGAATTAGGAAGAAAAAGTGGGAAATTTCAATATTATACCGTAGTCTTGATAGGCGAAGAAGTTTTAGTTTGAGAAGCCAAATTGTTTTCGTCCTTTGTTTATTTTCAAGCTTTAAGATTAGACAATGTATCTGTTTTTTTTTTTTGTCCTGGAGTTGCCATCTACATACTATACTACTATTTTCAAAAATCAATATTGTCAATGAAAGACATTGAATTCATCTCTAGAGTAATGCTGTATCTGAAAGTTGACTGGGATTTTTCATACTGGAGATTAAATCCTATTTGATCGGTGAACTTTTTTCTCTTTTTCTTTTCTTTTCCGAGTTCTACAACATTTTGGGGTTGGATTTGAACCTTTGACCTTGCTAGCGGTCACTAAACTTTTATATTTAGATTACTTTGGTTCTTAAATTTTCAAACATTTATTTTGCATAAAATGATTTCTTACACAAAGTTTAGAGAAAAGAGCAAAGCAGAAGTACAGAAAATATGGAAGTCTATTGCACTTAGATTGTTATTGCCGTTGCCGAATTGATGTTCTACTTCATAATTATCAAACGTGTAAGGTGAAACAAGCTGGTTATGTTTGATGGAATATCAGTTAGAAAATTACAAGAATGATGTCAATCTCTTGTCCAGGTGAAAGGGGCAGTAAGGAAATAACTGAGGGAGACGATGACCTGCCAAGGGATGCAAAGATTGTGAAAACACTTCTGAAATCAATGGGAGTTGAAGATTATGAACCGCGAGTTATACACCAGTTTCTTGAGTTGTGGTATCGCTATGTTGTCGACGTACTGACGGATGCACAAGTTTACTCAGAGCATGCGGGCAAAGCAGCCATTGACTGTGATGATGTGAAGCTTGCCATCCAGTCCAAAGTTAATTTCAGCTTCTCGCAACCTCCTCCAAGAGAGGTAACATGGCTTTGTAGTCCCGACTAGATGTGATTTATTTTTAGAGAGAATTTTTGGACAATTGATCTCTGATATAGGACCTACCGATAGGAAGTCTTTTGAAATGTAAATTATTTGAGTAATATGGCAATCACTGATCTCTGATAAGTTACTGCAGCTTACAACGAAATATTTGTCTTGTTAGCAAGAAATATCAATTTGTGCATGTGAAAGAACGTGTAATGTTGGAGAAAGAGGCTTTAAATGGGGCGATATTTATTGTATCTTATCAAAAGATGATGAATCATATTCTCAGATTTACCTTTTCCCTCATTTTCTTCTTTCCCATTAGAGGAAAATTGTTGAACCATGTGTTTCTTTTTTATCAGGTTCTTCTAGAGTTGGCTAGAAACAGGAATAAAATTCCATTGCCAAGGTCGATTGGCGGGCCTGGTATCGCCCTTCCACCTGATCAAGACACATTACTCAGCCCCAACTATCAACTGGCAATCCCAAGGAAGCAACCAGTCGAAACCATGGAGGAAACGGAGGAAGATGAAGGCGTTGACGCTGTTCCATCCCAAGAACCCAGTTCTGAAGTACCTCAACATACCCCACAGAGAGTATCTTTCCCCTTGGCAAAACGTCCAAAAATAACATAG

mRNA sequence

ATGAGTCGTGGAAGTGGCGGTGGATATGACAACCAAAACACTACTTTCTCGCCCGAAGCTCGACCTTCACAAGCGGGTGAAAGGGGCAGTAAGGAAATAACTGAGGGAGACGATGACCTGCCAAGGGATGCAAAGATTGTGAAAACACTTCTGAAATCAATGGGAGTTGAAGATTATGAACCGCGAGTTATACACCAGTTTCTTGAGTTGTGGTATCGCTATGTTGTCGACGTACTGACGGATGCACAAGTTTACTCAGAGCATGCGGGCAAAGCAGCCATTGACTGTGATGATGTGAAGCTTGCCATCCAGTCCAAAGTTAATTTCAGCTTCTCGCAACCTCCTCCAAGAGAGGTTCTTCTAGAGTTGGCTAGAAACAGGAATAAAATTCCATTGCCAAGGTCGATTGGCGGGCCTGGTATCGCCCTTCCACCTGATCAAGACACATTACTCAGCCCCAACTATCAACTGGCAATCCCAAGGAAGCAACCAGTCGAAACCATGGAGGAAACGGAGGAAGATGAAGGCGTTGACGCTGTTCCATCCCAAGAACCCAGTTCTGAAGTACCTCAACATACCCCACAGAGAGTATCTTTCCCCTTGGCAAAACGTCCAAAAATAACATAG

Coding sequence (CDS)

ATGAGTCGTGGAAGTGGCGGTGGATATGACAACCAAAACACTACTTTCTCGCCCGAAGCTCGACCTTCACAAGCGGGTGAAAGGGGCAGTAAGGAAATAACTGAGGGAGACGATGACCTGCCAAGGGATGCAAAGATTGTGAAAACACTTCTGAAATCAATGGGAGTTGAAGATTATGAACCGCGAGTTATACACCAGTTTCTTGAGTTGTGGTATCGCTATGTTGTCGACGTACTGACGGATGCACAAGTTTACTCAGAGCATGCGGGCAAAGCAGCCATTGACTGTGATGATGTGAAGCTTGCCATCCAGTCCAAAGTTAATTTCAGCTTCTCGCAACCTCCTCCAAGAGAGGTTCTTCTAGAGTTGGCTAGAAACAGGAATAAAATTCCATTGCCAAGGTCGATTGGCGGGCCTGGTATCGCCCTTCCACCTGATCAAGACACATTACTCAGCCCCAACTATCAACTGGCAATCCCAAGGAAGCAACCAGTCGAAACCATGGAGGAAACGGAGGAAGATGAAGGCGTTGACGCTGTTCCATCCCAAGAACCCAGTTCTGAAGTACCTCAACATACCCCACAGAGAGTATCTTTCCCCTTGGCAAAACGTCCAAAAATAACATAG

Protein sequence

MSRGSGGGYDNQNTTFSPEARPSQAGERGSKEITEGDDDLPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKAAIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLSPNYQLAIPRKQPVETMEETEEDEGVDAVPSQEPSSEVPQHTPQRVSFPLAKRPKIT

Homology

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BLAST of Lag0003141 vs. NCBI nr
Match: XP_022953465.1 (transcription initiation factor TFIID subunit 9 [Cucurbita moschata])

HSP 1 Score: 379.4 bits (973), Expect = 2.0e-101
Identity = 192/206 (93.20%), Postives = 199/206 (96.60%), Query Frame = 0


Query: 4   GSGGGYDNQNTTFSPEARPSQAGERGSKEITEGDDDLPRDAKIVKTLLKSMGVEDYEPRV 63
           G GGGYDNQNT FSPEARPSQ G+RG KE++EGD+DLPRDAKIVKTLLKSMGVEDYEPRV
Sbjct: 12  GGGGGYDNQNTNFSPEARPSQLGDRGVKEMSEGDEDLPRDAKIVKTLLKSMGVEDYEPRV 71

Query: 64  IHQFLELWYRYVVDVLTDAQVYSEHAGKAAIDCDDVKLAIQSKVNFSFSQPPPREVLLEL 123
           IHQFLELWYRYVVDVLTDAQVYSEHAGKAAIDCDDVKLAIQSKVNFSFSQPPPREVLLEL
Sbjct: 72  IHQFLELWYRYVVDVLTDAQVYSEHAGKAAIDCDDVKLAIQSKVNFSFSQPPPREVLLEL 131

Query: 124 ARNRNKIPLPRSIGGPGIALPPDQDTLLSPNYQLAIPRKQPVETMEETEEDEGVDAVPSQ 183
           ARNRNKIPLPRSIGGPGIALPPDQDTLLSPNYQLAIPRK+ VE MEETEEDEGVDAVPSQ
Sbjct: 132 ARNRNKIPLPRSIGGPGIALPPDQDTLLSPNYQLAIPRKRQVEAMEETEEDEGVDAVPSQ 191

Query: 184 EPSSEVP-QHTPQRVSFPLAKRPKIT 209
           EPS+EVP QHTPQRVSFPL+KRPKIT
Sbjct: 192 EPSTEVPQQHTPQRVSFPLSKRPKIT 217

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BLAST of Lag0003141 vs. NCBI nr
Match: XP_022144675.1 (transcription initiation factor TFIID subunit 9 [Momordica charantia])

HSP 1 Score: 378.3 bits (970), Expect = 4.4e-101
Identity = 189/208 (90.87%), Postives = 198/208 (95.19%), Query Frame = 0


Query: 1   MSRGSGGGYDNQNTTFSPEARPSQAGERGSKEITEGDDDLPRDAKIVKTLLKSMGVEDYE 60
           MSRG+GGGYDNQNT FSPEARPSQ GERGSKE+TEGD+DLPRDA+IVK LLKSMGVEDYE
Sbjct: 1   MSRGTGGGYDNQNTNFSPEARPSQLGERGSKEVTEGDEDLPRDARIVKALLKSMGVEDYE 60

Query: 61  PRVIHQFLELWYRYVVDVLTDAQVYSEHAGKAAIDCDDVKLAIQSKVNFSFSQPPPREVL 120
           PRVIHQFLELWYRYVVDVLTDAQVYSEHA KAAIDCDDVKLAIQSKVNFSFSQPPPREVL
Sbjct: 61  PRVIHQFLELWYRYVVDVLTDAQVYSEHACKAAIDCDDVKLAIQSKVNFSFSQPPPREVL 120

Query: 121 LELARNRNKIPLPRSIGGPGIALPPDQDTLLSPNYQLAIPRKQPVETMEETEEDEGVDAV 180
           LELARNRNKIPLPR+IGGPGIALPPD D L+SPNYQLAIP+KQPVETMEETEE+E VD  
Sbjct: 121 LELARNRNKIPLPRTIGGPGIALPPDLDALVSPNYQLAIPKKQPVETMEETEEEENVDFA 180

Query: 181 PSQEPSSEVPQHTPQRVSFPLAKRPKIT 209
            SQEPS+EVPQHTPQRVSFPLAKRPKIT
Sbjct: 181 SSQEPSTEVPQHTPQRVSFPLAKRPKIT 208

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BLAST of Lag0003141 vs. NCBI nr
Match: KAG7013987.1 (Transcription initiation factor TFIID subunit 9 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 377.9 bits (969), Expect = 5.8e-101
Identity = 195/211 (92.42%), Postives = 202/211 (95.73%), Query Frame = 0


Query: 1   MSRGS--GGGYDNQNTTFSPEARPSQAGERGSKEITEGDDDLPRDAKIVKTLLKSMGVED 60
           MSRGS  GGGYDNQNT FSPEARPSQ G+RG KE++EGD+DLPRDAKIVKTLLKSMGVED
Sbjct: 1   MSRGSGGGGGYDNQNTNFSPEARPSQLGDRGVKEMSEGDEDLPRDAKIVKTLLKSMGVED 60

Query: 61  YEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKAAIDCDDVKLAIQSKVNFSFSQPPPRE 120
           YEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKAAIDCDDVKLAIQSKVNFSFSQPPPRE
Sbjct: 61  YEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKAAIDCDDVKLAIQSKVNFSFSQPPPRE 120

Query: 121 VLLELARNRNKIPLPRSIGGPGIALPPDQDTLLSPNYQLAIPRKQPVETMEETEEDEGVD 180
           VLLELARNRNKIPLPRSIGGPGIALPPDQDTLLSPNYQLAIPRK+ VE MEETEEDEGVD
Sbjct: 121 VLLELARNRNKIPLPRSIGGPGIALPPDQDTLLSPNYQLAIPRKRQVEAMEETEEDEGVD 180

Query: 181 AVPSQEPSSEVP-QHTPQRVSFPLAKRPKIT 209
           AVPSQE S+EVP QHTPQRVSFPL+KRPKIT
Sbjct: 181 AVPSQELSTEVPQQHTPQRVSFPLSKRPKIT 211

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BLAST of Lag0003141 vs. NCBI nr
Match: KAG6575445.1 (Transcription initiation factor TFIID subunit 9, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 376.3 bits (965), Expect = 1.7e-100
Identity = 195/215 (90.70%), Postives = 202/215 (93.95%), Query Frame = 0


Query: 1   MSRGS------GGGYDNQNTTFSPEARPSQAGERGSKEITEGDDDLPRDAKIVKTLLKSM 60
           MSRGS      GGGYDNQNT FSPEARPSQ G+RG KE++EGD+DLPRDAKIVKTLLKSM
Sbjct: 1   MSRGSGGGGGGGGGYDNQNTNFSPEARPSQLGDRGVKEMSEGDEDLPRDAKIVKTLLKSM 60

Query: 61  GVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKAAIDCDDVKLAIQSKVNFSFSQP 120
           GVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKAAIDCDDVKLAIQSKVNFSFSQP
Sbjct: 61  GVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKAAIDCDDVKLAIQSKVNFSFSQP 120

Query: 121 PPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLSPNYQLAIPRKQPVETMEETEED 180
           PPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLSPNYQLAIPRK+ VE MEETEED
Sbjct: 121 PPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLSPNYQLAIPRKRQVEAMEETEED 180

Query: 181 EGVDAVPSQEPSSEVP-QHTPQRVSFPLAKRPKIT 209
           EGVDAVPSQE S+EVP QHTPQRVSFPL+KRPKIT
Sbjct: 181 EGVDAVPSQELSTEVPQQHTPQRVSFPLSKRPKIT 215

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BLAST of Lag0003141 vs. NCBI nr
Match: XP_022992393.1 (transcription initiation factor TFIID subunit 9 [Cucurbita maxima])

HSP 1 Score: 368.6 bits (945), Expect = 3.5e-98
Identity = 187/206 (90.78%), Postives = 196/206 (95.15%), Query Frame = 0


Query: 4   GSGGGYDNQNTTFSPEARPSQAGERGSKEITEGDDDLPRDAKIVKTLLKSMGVEDYEPRV 63
           G GGGYDNQNT FSPEAR SQ G+RG KE++EGD+DLPRDA+IVKTLLKSMGVEDYEPRV
Sbjct: 8   GGGGGYDNQNTNFSPEARTSQLGDRGVKEMSEGDEDLPRDARIVKTLLKSMGVEDYEPRV 67

Query: 64  IHQFLELWYRYVVDVLTDAQVYSEHAGKAAIDCDDVKLAIQSKVNFSFSQPPPREVLLEL 123
           IHQFLELWYRYVVDVLTDAQVYSEHAGKAAIDCDDVKLAIQSKVNFSFSQPPPREVLLEL
Sbjct: 68  IHQFLELWYRYVVDVLTDAQVYSEHAGKAAIDCDDVKLAIQSKVNFSFSQPPPREVLLEL 127

Query: 124 ARNRNKIPLPRSIGGPGIALPPDQDTLLSPNYQLAIPRKQPVETMEETEEDEGVDAVPSQ 183
           ARNRNKIPLPRSIGGPGIALPPD DTLLSPNYQLAIP+K+PVE MEETEEDEGVD VPSQ
Sbjct: 128 ARNRNKIPLPRSIGGPGIALPPDIDTLLSPNYQLAIPKKRPVEAMEETEEDEGVDTVPSQ 187

Query: 184 EPSSEVP-QHTPQRVSFPLAKRPKIT 209
           E S+EVP QHTPQRVSFPL+KRPKIT
Sbjct: 188 ELSTEVPQQHTPQRVSFPLSKRPKIT 213

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BLAST of Lag0003141 vs. ExPASy Swiss-Prot
Match: Q9SYH2 (Transcription initiation factor TFIID subunit 9 OS=Arabidopsis thaliana OX=3702 GN=TAF9 PE=1 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 6.0e-69
Identity = 132/180 (73.33%), Postives = 151/180 (83.89%), Query Frame = 0


Query: 35  EGDDDLPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKAAI 94
           EG++D+PRDAKIVK+LLKSMGVEDYEPRVIHQFLELWYRYVV+VLTDAQVYSEHA K  I
Sbjct: 4   EGEEDVPRDAKIVKSLLKSMGVEDYEPRVIHQFLELWYRYVVEVLTDAQVYSEHASKPNI 63

Query: 95  DCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLSPN 154
           DCDDVKLAIQSKVNFSFSQPPPREVLLELA +RNKIPLP+SI GPG+ LPP+QDTLLSPN
Sbjct: 64  DCDDVKLAIQSKVNFSFSQPPPREVLLELAASRNKIPLPKSIAGPGVPLPPEQDTLLSPN 123

Query: 155 YQLAIPRKQPVETMEETEEDEGV--------DAVPSQEPSSEVPQHTPQRVSFPLAKRPK 207
           YQL IP+K      EETE+DE +        +    Q+ +S++P  TPQRVSFPL++RPK
Sbjct: 124 YQLVIPKKSVSTEPEETEDDEEMTDPGQSSQEQQQQQQQTSDLPSQTPQRVSFPLSRRPK 183

[Close]

BLAST of Lag0003141 vs. ExPASy Swiss-Prot
Match: Q8VI33 (Transcription initiation factor TFIID subunit 9 OS=Mus musculus OX=10090 GN=Taf9 PE=1 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 1.5e-30
Identity = 71/160 (44.38%), Postives = 104/160 (65.00%), Query Frame = 0


Query: 40  LPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKAAIDCDDV 99
           +P+DA+++  +LK MG+ +YEPRVI+Q LE  +RYV  +L DA++YS HA KA +D DDV
Sbjct: 12  MPKDAQMMAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSHAKKATVDADDV 71

Query: 100 KLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLSPNYQL-A 159
           +LAIQ + + SF+ PPPR+ LL++AR RN+ PLP      G  LPPD+  L +PNY+L +
Sbjct: 72  RLAIQCRADQSFTSPPPRDFLLDIARQRNQTPLPLIKPYSGPRLPPDRYCLTAPNYRLKS 131

Query: 160 IPRKQPVETMEETEEDEGVDAVPSQEPSSEVPQHTPQRVS 199
           + +K P      T     V +V S+  +  +   TPQ +S
Sbjct: 132 LQKKAPAPAGRITVPRLSVGSVSSRPSTPTLGTPTPQTMS 171

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BLAST of Lag0003141 vs. ExPASy Swiss-Prot
Match: Q5BKE0 (Transcription initiation factor TFIID subunit 9 OS=Rattus norvegicus OX=10116 GN=Taf9 PE=2 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 5.5e-30
Identity = 70/160 (43.75%), Postives = 103/160 (64.38%), Query Frame = 0


Query: 40  LPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKAAIDCDDV 99
           +P+DA+++  +LK MG+ +YEPRVI+Q LE  +RYV  +L DA++YS HA K  +D DDV
Sbjct: 12  MPKDAQMMAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSHAKKPTVDADDV 71

Query: 100 KLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLSPNYQL-A 159
           +LAIQ + + SF+ PPPR+ LL++AR RN+ PLP      G  LPPD+  L +PNY+L +
Sbjct: 72  RLAIQCRADQSFTSPPPRDFLLDIARQRNQTPLPLIKPYSGPRLPPDRYCLTAPNYRLKS 131

Query: 160 IPRKQPVETMEETEEDEGVDAVPSQEPSSEVPQHTPQRVS 199
           + +K P      T     V +V S+  +  +   TPQ +S
Sbjct: 132 LQKKAPTPAGRITVPRLSVGSVSSRPSTPTLGTPTPQAMS 171

[Close]

BLAST of Lag0003141 vs. ExPASy Swiss-Prot
Match: Q16594 (Transcription initiation factor TFIID subunit 9 OS=Homo sapiens OX=9606 GN=TAF9 PE=1 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 1.2e-29
Identity = 71/166 (42.77%), Postives = 104/166 (62.65%), Query Frame = 0


Query: 34  TEGDDDLPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKAA 93
           T     +P+DA+++  +LK MG+ +YEPRVI+Q LE  +RYV  +L DA++YS HA KA 
Sbjct: 6   TASPKSMPKDAQMMAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSHAKKAT 65

Query: 94  IDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLSP 153
           +D DDV+LAIQ + + SF+ PPPR+ LL++AR RN+ PLP      G  LPPD+  L +P
Sbjct: 66  VDADDVRLAIQCRADQSFTSPPPRDFLLDIARQRNQTPLPLIKPYSGPRLPPDRYCLTAP 125

Query: 154 NYQL-AIPRKQPVETMEETEEDEGVDAVPSQEPSSEVPQHTPQRVS 199
           NY+L ++ +K        T     V +V S+  +  +   TPQ +S
Sbjct: 126 NYRLKSLQKKASTSAGRITVPRLSVGSVTSRPSTPTLGTPTPQTMS 171

[Close]

BLAST of Lag0003141 vs. ExPASy Swiss-Prot
Match: Q17QQ4 (Transcription initiation factor TFIID subunit 9 OS=Bos taurus OX=9913 GN=TAF9 PE=2 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 4.7e-29
Identity = 69/160 (43.12%), Postives = 102/160 (63.75%), Query Frame = 0


Query: 40  LPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKAAIDCDDV 99
           +P+DA+++  +LK MG+ +YEPRVI+Q LE  +RYV  +L DA++YS HA KA +D DDV
Sbjct: 12  MPKDAQMMAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSHAKKATVDADDV 71

Query: 100 KLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLSPNYQL-A 159
           +LAIQ + + SF+ PPPR+ LL++AR RN+ PLP      G  LPPD+  L +PNY+L +
Sbjct: 72  RLAIQCRADQSFTSPPPRDFLLDIARQRNQTPLPLIKPYSGPRLPPDRYCLTAPNYRLKS 131

Query: 160 IPRKQPVETMEETEEDEGVDAVPSQEPSSEVPQHTPQRVS 199
           + +K        T     V +V S+  +  +   TP  +S
Sbjct: 132 LQKKASASAGRITVPRLSVGSVTSRPSTPTLGTPTPPAMS 171

[Close]

BLAST of Lag0003141 vs. ExPASy TrEMBL
Match: A0A6J1GPP8 (transcription initiation factor TFIID subunit 9 OS=Cucurbita moschata OX=3662 GN=LOC111456006 PE=3 SV=1)

HSP 1 Score: 379.4 bits (973), Expect = 9.6e-102
Identity = 192/206 (93.20%), Postives = 199/206 (96.60%), Query Frame = 0


Query: 4   GSGGGYDNQNTTFSPEARPSQAGERGSKEITEGDDDLPRDAKIVKTLLKSMGVEDYEPRV 63
           G GGGYDNQNT FSPEARPSQ G+RG KE++EGD+DLPRDAKIVKTLLKSMGVEDYEPRV
Sbjct: 12  GGGGGYDNQNTNFSPEARPSQLGDRGVKEMSEGDEDLPRDAKIVKTLLKSMGVEDYEPRV 71

Query: 64  IHQFLELWYRYVVDVLTDAQVYSEHAGKAAIDCDDVKLAIQSKVNFSFSQPPPREVLLEL 123
           IHQFLELWYRYVVDVLTDAQVYSEHAGKAAIDCDDVKLAIQSKVNFSFSQPPPREVLLEL
Sbjct: 72  IHQFLELWYRYVVDVLTDAQVYSEHAGKAAIDCDDVKLAIQSKVNFSFSQPPPREVLLEL 131

Query: 124 ARNRNKIPLPRSIGGPGIALPPDQDTLLSPNYQLAIPRKQPVETMEETEEDEGVDAVPSQ 183
           ARNRNKIPLPRSIGGPGIALPPDQDTLLSPNYQLAIPRK+ VE MEETEEDEGVDAVPSQ
Sbjct: 132 ARNRNKIPLPRSIGGPGIALPPDQDTLLSPNYQLAIPRKRQVEAMEETEEDEGVDAVPSQ 191

Query: 184 EPSSEVP-QHTPQRVSFPLAKRPKIT 209
           EPS+EVP QHTPQRVSFPL+KRPKIT
Sbjct: 192 EPSTEVPQQHTPQRVSFPLSKRPKIT 217

[Close]

BLAST of Lag0003141 vs. ExPASy TrEMBL
Match: A0A6J1CSB1 (transcription initiation factor TFIID subunit 9 OS=Momordica charantia OX=3673 GN=LOC111014303 PE=3 SV=1)

HSP 1 Score: 378.3 bits (970), Expect = 2.1e-101
Identity = 189/208 (90.87%), Postives = 198/208 (95.19%), Query Frame = 0


Query: 1   MSRGSGGGYDNQNTTFSPEARPSQAGERGSKEITEGDDDLPRDAKIVKTLLKSMGVEDYE 60
           MSRG+GGGYDNQNT FSPEARPSQ GERGSKE+TEGD+DLPRDA+IVK LLKSMGVEDYE
Sbjct: 1   MSRGTGGGYDNQNTNFSPEARPSQLGERGSKEVTEGDEDLPRDARIVKALLKSMGVEDYE 60

Query: 61  PRVIHQFLELWYRYVVDVLTDAQVYSEHAGKAAIDCDDVKLAIQSKVNFSFSQPPPREVL 120
           PRVIHQFLELWYRYVVDVLTDAQVYSEHA KAAIDCDDVKLAIQSKVNFSFSQPPPREVL
Sbjct: 61  PRVIHQFLELWYRYVVDVLTDAQVYSEHACKAAIDCDDVKLAIQSKVNFSFSQPPPREVL 120

Query: 121 LELARNRNKIPLPRSIGGPGIALPPDQDTLLSPNYQLAIPRKQPVETMEETEEDEGVDAV 180
           LELARNRNKIPLPR+IGGPGIALPPD D L+SPNYQLAIP+KQPVETMEETEE+E VD  
Sbjct: 121 LELARNRNKIPLPRTIGGPGIALPPDLDALVSPNYQLAIPKKQPVETMEETEEEENVDFA 180

Query: 181 PSQEPSSEVPQHTPQRVSFPLAKRPKIT 209
            SQEPS+EVPQHTPQRVSFPLAKRPKIT
Sbjct: 181 SSQEPSTEVPQHTPQRVSFPLAKRPKIT 208

[Close]

BLAST of Lag0003141 vs. ExPASy TrEMBL
Match: A0A6J1JZ27 (transcription initiation factor TFIID subunit 9 OS=Cucurbita maxima OX=3661 GN=LOC111488713 PE=3 SV=1)

HSP 1 Score: 368.6 bits (945), Expect = 1.7e-98
Identity = 187/206 (90.78%), Postives = 196/206 (95.15%), Query Frame = 0


Query: 4   GSGGGYDNQNTTFSPEARPSQAGERGSKEITEGDDDLPRDAKIVKTLLKSMGVEDYEPRV 63
           G GGGYDNQNT FSPEAR SQ G+RG KE++EGD+DLPRDA+IVKTLLKSMGVEDYEPRV
Sbjct: 8   GGGGGYDNQNTNFSPEARTSQLGDRGVKEMSEGDEDLPRDARIVKTLLKSMGVEDYEPRV 67

Query: 64  IHQFLELWYRYVVDVLTDAQVYSEHAGKAAIDCDDVKLAIQSKVNFSFSQPPPREVLLEL 123
           IHQFLELWYRYVVDVLTDAQVYSEHAGKAAIDCDDVKLAIQSKVNFSFSQPPPREVLLEL
Sbjct: 68  IHQFLELWYRYVVDVLTDAQVYSEHAGKAAIDCDDVKLAIQSKVNFSFSQPPPREVLLEL 127

Query: 124 ARNRNKIPLPRSIGGPGIALPPDQDTLLSPNYQLAIPRKQPVETMEETEEDEGVDAVPSQ 183
           ARNRNKIPLPRSIGGPGIALPPD DTLLSPNYQLAIP+K+PVE MEETEEDEGVD VPSQ
Sbjct: 128 ARNRNKIPLPRSIGGPGIALPPDIDTLLSPNYQLAIPKKRPVEAMEETEEDEGVDTVPSQ 187

Query: 184 EPSSEVP-QHTPQRVSFPLAKRPKIT 209
           E S+EVP QHTPQRVSFPL+KRPKIT
Sbjct: 188 ELSTEVPQQHTPQRVSFPLSKRPKIT 213

[Close]

BLAST of Lag0003141 vs. ExPASy TrEMBL
Match: A0A1S4E4D8 (transcription initiation factor TFIID subunit 9 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103500691 PE=3 SV=1)

HSP 1 Score: 323.6 bits (828), Expect = 6.2e-85
Identity = 168/182 (92.31%), Postives = 175/182 (96.15%), Query Frame = 0


Query: 30  SKEITEGDDDLPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHA 89
           SKE+++GD++LPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHA
Sbjct: 17  SKEMSDGDEELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHA 76

Query: 90  GKAAIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDT 149
           GKAAIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDT
Sbjct: 77  GKAAIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDT 136

Query: 150 LLSPNYQLAIPRKQPVETMEETEEDEGVD-AVPSQEP-SSEVP-QHTPQRVSFPLAKRPK 209
           LLSPNYQLAIP+KQ VETMEETEEDEG D  VPSQEP SSEVP QH PQRVSFPLAKRPK
Sbjct: 137 LLSPNYQLAIPKKQAVETMEETEEDEGDDTVVPSQEPSSSEVPQQHAPQRVSFPLAKRPK 196

[Close]

BLAST of Lag0003141 vs. ExPASy TrEMBL
Match: A0A1S3CGN5 (transcription initiation factor TFIID subunit 9 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103500691 PE=3 SV=1)

HSP 1 Score: 318.5 bits (815), Expect = 2.0e-83
Identity = 165/179 (92.18%), Postives = 172/179 (96.09%), Query Frame = 0


Query: 33  ITEGDDDLPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKA 92
           +++GD++LPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKA
Sbjct: 1   MSDGDEELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKA 60

Query: 93  AIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLS 152
           AIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLS
Sbjct: 61  AIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLS 120

Query: 153 PNYQLAIPRKQPVETMEETEEDEGVD-AVPSQEP-SSEVP-QHTPQRVSFPLAKRPKIT 209
           PNYQLAIP+KQ VETMEETEEDEG D  VPSQEP SSEVP QH PQRVSFPLAKRPK+T
Sbjct: 121 PNYQLAIPKKQAVETMEETEEDEGDDTVVPSQEPSSSEVPQQHAPQRVSFPLAKRPKLT 179

[Close]

BLAST of Lag0003141 vs. TAIR 10
Match: AT1G54140.1 (TATA binding protein associated factor 21kDa subunit )

HSP 1 Score: 261.9 bits (668), Expect = 4.3e-70
Identity = 132/180 (73.33%), Postives = 151/180 (83.89%), Query Frame = 0


Query: 35  EGDDDLPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKAAI 94
           EG++D+PRDAKIVK+LLKSMGVEDYEPRVIHQFLELWYRYVV+VLTDAQVYSEHA K  I
Sbjct: 4   EGEEDVPRDAKIVKSLLKSMGVEDYEPRVIHQFLELWYRYVVEVLTDAQVYSEHASKPNI 63

Query: 95  DCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLSPN 154
           DCDDVKLAIQSKVNFSFSQPPPREVLLELA +RNKIPLP+SI GPG+ LPP+QDTLLSPN
Sbjct: 64  DCDDVKLAIQSKVNFSFSQPPPREVLLELAASRNKIPLPKSIAGPGVPLPPEQDTLLSPN 123

Query: 155 YQLAIPRKQPVETMEETEEDEGV--------DAVPSQEPSSEVPQHTPQRVSFPLAKRPK 207
           YQL IP+K      EETE+DE +        +    Q+ +S++P  TPQRVSFPL++RPK
Sbjct: 124 YQLVIPKKSVSTEPEETEDDEEMTDPGQSSQEQQQQQQQTSDLPSQTPQRVSFPLSRRPK 183

The following BLAST results are available for this feature:

BLAST of Lag0003141 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022953465.1	2.0e-101	93.20	transcription initiation factor TFIID subunit 9 [Cucurbita moschata]	[more]
XP_022144675.1	4.4e-101	90.87	transcription initiation factor TFIID subunit 9 [Momordica charantia]	[more]
KAG7013987.1	5.8e-101	92.42	Transcription initiation factor TFIID subunit 9 [Cucurbita argyrosperma subsp. a...	[more]
KAG6575445.1	1.7e-100	90.70	Transcription initiation factor TFIID subunit 9, partial [Cucurbita argyrosperma...	[more]
XP_022992393.1	3.5e-98	90.78	transcription initiation factor TFIID subunit 9 [Cucurbita maxima]	[more]

BLAST of Lag0003141 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SYH2	6.0e-69	73.33	Transcription initiation factor TFIID subunit 9 OS=Arabidopsis thaliana OX=3702 ...	[more]
Q8VI33	1.5e-30	44.38	Transcription initiation factor TFIID subunit 9 OS=Mus musculus OX=10090 GN=Taf9...	[more]
Q5BKE0	5.5e-30	43.75	Transcription initiation factor TFIID subunit 9 OS=Rattus norvegicus OX=10116 GN...	[more]
Q16594	1.2e-29	42.77	Transcription initiation factor TFIID subunit 9 OS=Homo sapiens OX=9606 GN=TAF9 ...	[more]
Q17QQ4	4.7e-29	43.13	Transcription initiation factor TFIID subunit 9 OS=Bos taurus OX=9913 GN=TAF9 PE...	[more]

BLAST of Lag0003141 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GPP8	9.6e-102	93.20	transcription initiation factor TFIID subunit 9 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1CSB1	2.1e-101	90.87	transcription initiation factor TFIID subunit 9 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1JZ27	1.7e-98	90.78	transcription initiation factor TFIID subunit 9 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A1S4E4D8	6.2e-85	92.31	transcription initiation factor TFIID subunit 9 isoform X1 OS=Cucumis melo OX=36...	[more]
A0A1S3CGN5	2.0e-83	92.18	transcription initiation factor TFIID subunit 9 isoform X2 OS=Cucumis melo OX=36...	[more]

BLAST of Lag0003141 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G54140.1	4.3e-70	73.33	TATA binding protein associated factor 21kDa subunit	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 41..108 e-value: 1.3E-30 score: 107.4
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 41..105
IPR003162	Transcription initiation factor TAFII31	PFAM	PF02291	TFIID-31kDa	coord: 39..157 e-value: 1.3E-46 score: 157.6
IPR003162	Transcription initiation factor TAFII31	CDD	cd07979	TAF9	coord: 41..157 e-value: 6.27803E-67 score: 199.38
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..40
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 161..208
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 25..40
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21
None	No IPR available	PANTHER	PTHR48068	TAF9 RNA POLYMERASE II, TATA BOX-BINDING PROTEIN (TBP)-ASSOCIATED FACTOR	coord: 24..193

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0003141.1	Lag0003141.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043966	histone H3 acetylation
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
biological_process	GO:0051123	RNA polymerase II preinitiation complex assembly
biological_process	GO:0006352	DNA-templated transcription, initiation
cellular_component	GO:0000124	SAGA complex
cellular_component	GO:0005669	transcription factor TFIID complex
molecular_function	GO:0046982	protein heterodimerization activity
molecular_function	GO:0016251	RNA polymerase II general transcription initiation factor activity
molecular_function	GO:0003713	transcription coactivator activity