Lag0003113 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0003113
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionPlant/F1L3-4 protein, putative
Locationchr4: 48167497 .. 48168382 (+)
RNA-Seq ExpressionLag0003113
SyntenyLag0003113
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGAGCCAAAGATTGAGATGAAAGATTCTTCTTCAGGTATTGCCAAACTTTCAATCTATTTCTTGTTCTTATCAACTTCATTTTAGGAATTATGAATCGATTGCTCTGATGTTATGTGCGTTTCTTCTAGATGCCGTTTCTAAAATATAATCAGCTCGAAATTGTTGCATTGAGTAAATATCATCTAGTGGCATGCAATTGATAACGTATTTCATCTTTTCCAGTGATTTCTGTCGGCGATGATGTGTTATCCAGCTAGAAAATAATATAACAGCCCGTATTTTGAGTAATTAATGGCGTTGATTGATTACTACGGCTATTCTAAGGCAATGTTTGATTTCGAAGCATTAGTATAATTCAGATGTTTAGGATTAATCGATTCAATGGGAATTATGTTTAGTTGAAAGGAATCTGCTGTCGTTTCTGAAGAGATTATTTTCCTTCTGCCTTTTCTAGAGCAAATTCTTATCAAAAAGCATGAAATCTCGAGCTTATGCTTATTAAGGTGTTGCTCCAATTGTTTATAAGGAGTTTTTTTTTAGATCGGAAACAACTTCTCTGGCATAGTTTGATTTTGCTAATAGAGATTTTGGCTGACTGACATTCTCTCTTTTTTCCCCTGGTGTGTAACACATACTTTGAGAAGAAAAGGATGCAAAAGCACCCAATATTTTTGAGAGAGCCAAAGAAGAAATAGAGGCTGTGATCCACTCTAATAAATCACCACGCCATCACAAAGAAACACATGGAAGAAGTGATGATATCGACGAGACTACGCCCGCGGATGAAGTAAAGGCCCCTGGAGTGTTTGGAAGAGTGAAGGAAGAGATTGAGGCAGTTGTGGAAGCAATTCATCCCACGAAGGATTCTGGAGATCACTAG

mRNA sequence

ATGGAGGAGCCAAAGATTGAGATGAAAGATTCTTCTTCAGAAAAGGATGCAAAAGCACCCAATATTTTTGAGAGAGCCAAAGAAGAAATAGAGGCTGTGATCCACTCTAATAAATCACCACGCCATCACAAAGAAACACATGGAAGAAGTGATGATATCGACGAGACTACGCCCGCGGATGAAGTAAAGGCCCCTGGAGTGTTTGGAAGAGTGAAGGAAGAGATTGAGGCAGTTGTGGAAGCAATTCATCCCACGAAGGATTCTGGAGATCACTAG

Coding sequence (CDS)

ATGGAGGAGCCAAAGATTGAGATGAAAGATTCTTCTTCAGAAAAGGATGCAAAAGCACCCAATATTTTTGAGAGAGCCAAAGAAGAAATAGAGGCTGTGATCCACTCTAATAAATCACCACGCCATCACAAAGAAACACATGGAAGAAGTGATGATATCGACGAGACTACGCCCGCGGATGAAGTAAAGGCCCCTGGAGTGTTTGGAAGAGTGAAGGAAGAGATTGAGGCAGTTGTGGAAGCAATTCATCCCACGAAGGATTCTGGAGATCACTAG

Protein sequence

MEEPKIEMKDSSSEKDAKAPNIFERAKEEIEAVIHSNKSPRHHKETHGRSDDIDETTPADEVKAPGVFGRVKEEIEAVVEAIHPTKDSGDH
Homology
BLAST of Lag0003113 vs. NCBI nr
Match: XP_038900254.1 (uncharacterized protein LOC120087339 [Benincasa hispida] >XP_038900255.1 uncharacterized protein LOC120087339 [Benincasa hispida])

HSP 1 Score: 162.9 bits (411), Expect = 1.3e-36
Identity = 81/91 (89.01%), Postives = 87/91 (95.60%), Query Frame = 0

Query: 1  MEEPKIEMKDSSSEKDAKAPNIFERAKEEIEAVIHSNKSPRHHKETHGRSDDIDETTPAD 60
          MEEPK E+KDSSSEKDAK+PNIFERAKEEIEAVIHSNKSPRHHKETHGRSDDIDETTPAD
Sbjct: 1  MEEPKTEIKDSSSEKDAKSPNIFERAKEEIEAVIHSNKSPRHHKETHGRSDDIDETTPAD 60

Query: 61 EVKAPGVFGRVKEEIEAVVEAIHPTKDSGDH 92
          EVKAPGVFGRVKEE+EA++ AIHP KDS +H
Sbjct: 61 EVKAPGVFGRVKEEVEALIGAIHPKKDSDNH 91

BLAST of Lag0003113 vs. NCBI nr
Match: XP_008462344.1 (PREDICTED: uncharacterized protein LOC103500717 [Cucumis melo] >KAA0059422.1 uncharacterized protein E6C27_scaffold242G001490 [Cucumis melo var. makuwa] >TYK03904.1 uncharacterized protein E5676_scaffold347G001000 [Cucumis melo var. makuwa])

HSP 1 Score: 155.6 bits (392), Expect = 2.0e-34
Identity = 78/91 (85.71%), Postives = 83/91 (91.21%), Query Frame = 0

Query: 1  MEEPKIEMKDSSSEKDAKAPNIFERAKEEIEAVIHSNKSPRHHKETHGRSDDIDETTPAD 60
          MEEPK E+K SSSEK+ K+PNIFERAKEEIEAV H NKSPRHHKETHGRSDDIDETTPAD
Sbjct: 1  MEEPKAEIKGSSSEKEPKSPNIFERAKEEIEAVTHCNKSPRHHKETHGRSDDIDETTPAD 60

Query: 61 EVKAPGVFGRVKEEIEAVVEAIHPTKDSGDH 92
          EVKAPGVFGRVKEE+EA+V AIHP KDSG H
Sbjct: 61 EVKAPGVFGRVKEEVEALVGAIHPKKDSGSH 91

BLAST of Lag0003113 vs. NCBI nr
Match: XP_022144348.1 (uncharacterized protein LOC111014044 isoform X2 [Momordica charantia])

HSP 1 Score: 155.2 bits (391), Expect = 2.7e-34
Identity = 77/91 (84.62%), Postives = 84/91 (92.31%), Query Frame = 0

Query: 1  MEEPKIEMKDSSSEKDAKAPNIFERAKEEIEAVIHSNKSPRHHKETHGRSDDIDETTPAD 60
          MEEPK  +KDSSS KDAKAPN+FERAKEEIEA++HSNKSPRHHKETHGRSDDIDETTP+D
Sbjct: 1  MEEPKTVIKDSSSGKDAKAPNLFERAKEEIEAIVHSNKSPRHHKETHGRSDDIDETTPSD 60

Query: 61 EVKAPGVFGRVKEEIEAVVEAIHPTKDSGDH 92
          EVKAPGVFGRVKEEIEA+V  IHP KDS +H
Sbjct: 61 EVKAPGVFGRVKEEIEALVGTIHPKKDSDNH 91

BLAST of Lag0003113 vs. NCBI nr
Match: KGN45517.1 (hypothetical protein Csa_016837 [Cucumis sativus])

HSP 1 Score: 153.3 bits (386), Expect = 1.0e-33
Identity = 77/91 (84.62%), Postives = 83/91 (91.21%), Query Frame = 0

Query: 1  MEEPKIEMKDSSSEKDAKAPNIFERAKEEIEAVIHSNKSPRHHKETHGRSDDIDETTPAD 60
          MEE K E+K SSSE++ K+PNIFERAKEEIEAVIH NKSPRHHKETHGRSDDIDETTPAD
Sbjct: 1  MEESKTEIKGSSSEREPKSPNIFERAKEEIEAVIHCNKSPRHHKETHGRSDDIDETTPAD 60

Query: 61 EVKAPGVFGRVKEEIEAVVEAIHPTKDSGDH 92
          EVKAPGVFGRVKEE+EA+V AIHP KDSG H
Sbjct: 61 EVKAPGVFGRVKEEVEALVGAIHPKKDSGSH 91

BLAST of Lag0003113 vs. NCBI nr
Match: XP_022144340.1 (uncharacterized protein LOC111014044 isoform X1 [Momordica charantia])

HSP 1 Score: 153.3 bits (386), Expect = 1.0e-33
Identity = 78/92 (84.78%), Postives = 85/92 (92.39%), Query Frame = 0

Query: 1  MEEPKIEMKDSSSE-KDAKAPNIFERAKEEIEAVIHSNKSPRHHKETHGRSDDIDETTPA 60
          MEEPK  +KDSSSE KDAKAPN+FERAKEEIEA++HSNKSPRHHKETHGRSDDIDETTP+
Sbjct: 1  MEEPKTVIKDSSSEGKDAKAPNLFERAKEEIEAIVHSNKSPRHHKETHGRSDDIDETTPS 60

Query: 61 DEVKAPGVFGRVKEEIEAVVEAIHPTKDSGDH 92
          DEVKAPGVFGRVKEEIEA+V  IHP KDS +H
Sbjct: 61 DEVKAPGVFGRVKEEIEALVGTIHPKKDSDNH 92

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038900254.11.3e-3689.01uncharacterized protein LOC120087339 [Benincasa hispida] >XP_038900255.1 unchara... [more]
XP_008462344.12.0e-3485.71PREDICTED: uncharacterized protein LOC103500717 [Cucumis melo] >KAA0059422.1 unc... [more]
XP_022144348.12.7e-3484.62uncharacterized protein LOC111014044 isoform X2 [Momordica charantia][more]
KGN45517.11.0e-3384.62hypothetical protein Csa_016837 [Cucumis sativus][more]
XP_022144340.11.0e-3384.78uncharacterized protein LOC111014044 isoform X1 [Momordica charantia][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..67
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..59
NoneNo IPR availablePANTHERPTHR35277OS09G0363700 PROTEINcoord: 3..89
NoneNo IPR availablePANTHERPTHR35277:SF12PROTEIN, PUTATIVE-RELATEDcoord: 3..89

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0003113.1Lag0003113.1mRNA