Lag0003006 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0003006
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	30S ribosomal protein S17, chloroplastic
Location	chr4: 47331164 .. 47331640 (+)
RNA-Seq Expression	Lag0003006
Synteny	Lag0003006

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTGCAACTCTAACTTCCTCATCCCTTCTGCAAATTCCTCCATTACAGAGGCTAAAGAATCTCTCAATTTCCACCTCCTTCCTCCATGGCTCAACTCCCCTCTCATTCCTCTCTAAGCCCTCGCCATCTCTCCCCCAAACCCTCAATTTCCTCCCCTCCATTAGGGCCATGAGGTCCCTGCAAGGCCGCGTCGTCTGCGCCACCAACGACAAGACCGTCGCCGTCGAGGTCGTGCGATTGGCGCCTCATCCGAAGTACAAACGGCGCATCAGAATCAAGAAGAAGTACCAGGCGCACGATCCGGATAACCAGTTCAAGGTCGGAGACTTTGTGGAGCTTGAAAAATGCCGCCCGATTAGCAAGATGAAGACGTTCCTCGCCATTCCGGTTCCGGCGAGGAATTCGAAGCAGAAAGTGGCGGAAGCAGGGGCTGGGGAGCTCGGGATTCCATTGGAGTCTCAGCAACAGGTTTGA

mRNA sequence

ATGTCTGCAACTCTAACTTCCTCATCCCTTCTGCAAATTCCTCCATTACAGAGGCTAAAGAATCTCTCAATTTCCACCTCCTTCCTCCATGGCTCAACTCCCCTCTCATTCCTCTCTAAGCCCTCGCCATCTCTCCCCCAAACCCTCAATTTCCTCCCCTCCATTAGGGCCATGAGGTCCCTGCAAGGCCGCGTCGTCTGCGCCACCAACGACAAGACCGTCGCCGTCGAGGTCGTGCGATTGGCGCCTCATCCGAAGTACAAACGGCGCATCAGAATCAAGAAGAAGTACCAGGCGCACGATCCGGATAACCAGTTCAAGGTCGGAGACTTTGTGGAGCTTGAAAAATGCCGCCCGATTAGCAAGATGAAGACGTTCCTCGCCATTCCGGTTCCGGCGAGGAATTCGAAGCAGAAAGTGGCGGAAGCAGGGGCTGGGGAGCTCGGGATTCCATTGGAGTCTCAGCAACAGGTTTGA

Coding sequence (CDS)

ATGTCTGCAACTCTAACTTCCTCATCCCTTCTGCAAATTCCTCCATTACAGAGGCTAAAGAATCTCTCAATTTCCACCTCCTTCCTCCATGGCTCAACTCCCCTCTCATTCCTCTCTAAGCCCTCGCCATCTCTCCCCCAAACCCTCAATTTCCTCCCCTCCATTAGGGCCATGAGGTCCCTGCAAGGCCGCGTCGTCTGCGCCACCAACGACAAGACCGTCGCCGTCGAGGTCGTGCGATTGGCGCCTCATCCGAAGTACAAACGGCGCATCAGAATCAAGAAGAAGTACCAGGCGCACGATCCGGATAACCAGTTCAAGGTCGGAGACTTTGTGGAGCTTGAAAAATGCCGCCCGATTAGCAAGATGAAGACGTTCCTCGCCATTCCGGTTCCGGCGAGGAATTCGAAGCAGAAAGTGGCGGAAGCAGGGGCTGGGGAGCTCGGGATTCCATTGGAGTCTCAGCAACAGGTTTGA

Protein sequence

MSATLTSSSLLQIPPLQRLKNLSISTSFLHGSTPLSFLSKPSPSLPQTLNFLPSIRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARNSKQKVAEAGAGELGIPLESQQQV

Homology

[Close]

BLAST of Lag0003006 vs. NCBI nr
Match: XP_023000403.1 (30S ribosomal protein S17, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 285.0 bits (728), Expect = 3.9e-73
Identity = 147/158 (93.04%), Postives = 152/158 (96.20%), Query Frame = 0


Query: 1   MSATLTSSSLLQIPPLQRLKNLSISTSFLHGSTPLSFLSKPSPSLPQTLNFLPSIRAMRS 60
           M ATLT SS+LQIPPLQR K LS+STSFLHGSTPLSFLSKP+PS PQTLNFLPSIRAM+S
Sbjct: 1   MFATLTPSSVLQIPPLQRFKKLSLSTSFLHGSTPLSFLSKPAPSPPQTLNFLPSIRAMKS 60

Query: 61  LQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCRPI 120
           LQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCRPI
Sbjct: 61  LQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCRPI 120

Query: 121 SKMKTFLAIPVPARNSKQKVAEAGAGELGIPLESQQQV 159
           SKMKTFLAIPVPARNSKQKVAEA AG+LGIPLESQQQV
Sbjct: 121 SKMKTFLAIPVPARNSKQKVAEAAAGDLGIPLESQQQV 158

[Close]

BLAST of Lag0003006 vs. NCBI nr
Match: XP_022964008.1 (30S ribosomal protein S17, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 283.1 bits (723), Expect = 1.5e-72
Identity = 146/158 (92.41%), Postives = 151/158 (95.57%), Query Frame = 0


Query: 1   MSATLTSSSLLQIPPLQRLKNLSISTSFLHGSTPLSFLSKPSPSLPQTLNFLPSIRAMRS 60
           M ATL  SS+LQIPPLQR K LS+STSFLHGSTPLSFLSKP+PS PQTLNFLPSIRAM+S
Sbjct: 1   MFATLNPSSVLQIPPLQRFKKLSLSTSFLHGSTPLSFLSKPAPSPPQTLNFLPSIRAMKS 60

Query: 61  LQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCRPI 120
           LQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCRPI
Sbjct: 61  LQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCRPI 120

Query: 121 SKMKTFLAIPVPARNSKQKVAEAGAGELGIPLESQQQV 159
           SKMKTFLAIPVPARNSKQKVAEA AG+LGIPLESQQQV
Sbjct: 121 SKMKTFLAIPVPARNSKQKVAEAAAGDLGIPLESQQQV 158

[Close]

BLAST of Lag0003006 vs. NCBI nr
Match: XP_023513636.1 (30S ribosomal protein S17, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 281.6 bits (719), Expect = 4.3e-72
Identity = 145/158 (91.77%), Postives = 151/158 (95.57%), Query Frame = 0


Query: 1   MSATLTSSSLLQIPPLQRLKNLSISTSFLHGSTPLSFLSKPSPSLPQTLNFLPSIRAMRS 60
           M ATL  SS+LQIPPLQR K LS+STSFLHGSTPLSFLSKP+PS PQTLNFLPSIRAM+S
Sbjct: 1   MFATLNPSSVLQIPPLQRFKKLSLSTSFLHGSTPLSFLSKPAPSPPQTLNFLPSIRAMKS 60

Query: 61  LQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCRPI 120
           LQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCRPI
Sbjct: 61  LQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCRPI 120

Query: 121 SKMKTFLAIPVPARNSKQKVAEAGAGELGIPLESQQQV 159
           SKMKTFLAIPVPARNSK+KVAEA AG+LGIPLESQQQV
Sbjct: 121 SKMKTFLAIPVPARNSKKKVAEAAAGDLGIPLESQQQV 158

[Close]

BLAST of Lag0003006 vs. NCBI nr
Match: XP_023548191.1 (30S ribosomal protein S17, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 278.9 bits (712), Expect = 2.8e-71
Identity = 147/160 (91.88%), Postives = 151/160 (94.38%), Query Frame = 0


Query: 1   MSATLTSSSLLQIPPLQRLKNLSISTSFLHGSTPLSFLSKPSPSL--PQTLNFLPSIRAM 60
           MSATL+ SS LQIPPLQRLKNLS+STSFLHGS PLSFLSKPSPSL   QT NFLPSI+AM
Sbjct: 1   MSATLSPSSFLQIPPLQRLKNLSVSTSFLHGSVPLSFLSKPSPSLSASQTPNFLPSIKAM 60

Query: 61  RSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCR 120
           RSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDN+FKVGDFVELEKCR
Sbjct: 61  RSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNKFKVGDFVELEKCR 120

Query: 121 PISKMKTFLAIPVPARNSKQKVAEAGAGELGIPLESQQQV 159
           PISKMKTFLAIPVPARNSK K AEAGAGELGIPLESQQQV
Sbjct: 121 PISKMKTFLAIPVPARNSKPKAAEAGAGELGIPLESQQQV 160

[Close]

BLAST of Lag0003006 vs. NCBI nr
Match: KAG6593467.1 (30S ribosomal protein S17, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7025808.1 30S ribosomal protein S17, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 277.3 bits (708), Expect = 8.0e-71
Identity = 143/157 (91.08%), Postives = 149/157 (94.90%), Query Frame = 0


Query: 1   MSATLTSSSLLQIPPLQRLKNLSISTSFLHGSTPLSFLSKPSPSLPQTLNFLPSIRAMRS 60
           M ATL  SS+LQIPPLQR K LS+ST+FLHGSTPLSFLSKP+ S PQTLNFLPSIRAM+S
Sbjct: 1   MFATLNPSSVLQIPPLQRFKKLSLSTTFLHGSTPLSFLSKPASSPPQTLNFLPSIRAMKS 60

Query: 61  LQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCRPI 120
           LQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCRPI
Sbjct: 61  LQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCRPI 120

Query: 121 SKMKTFLAIPVPARNSKQKVAEAGAGELGIPLESQQQ 158
           SKMKTFLAIPVPARNSKQKVAEA AG+LGIPLESQQQ
Sbjct: 121 SKMKTFLAIPVPARNSKQKVAEAAAGDLGIPLESQQQ 157

[Close]

BLAST of Lag0003006 vs. ExPASy Swiss-Prot
Match: P16180 (30S ribosomal protein S17, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS17 PE=1 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 7.4e-43
Identity = 97/141 (68.79%), Postives = 116/141 (82.27%), Query Frame = 0


Query: 19  LKNLSISTSFLHGSTPLSFLSKPSPSLP--QTLNFLPSIRAMRSLQGRVVCATNDKTVAV 78
           L+ L +S+ F HGSTPLS LSKP+ S P  +    +P IRAM+++QGRVVCAT+DKTVAV
Sbjct: 10  LQALKLSSPFAHGSTPLSSLSKPN-SFPNHRMPALVPVIRAMKTMQGRVVCATSDKTVAV 69

Query: 79  EVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARNS 138
           EVVRLAPHPKYKRR+R+KKKYQAHDPDNQFKVGD V LEK RPISK K+F+A+PV AR +
Sbjct: 70  EVVRLAPHPKYKRRVRMKKKYQAHDPDNQFKVGDVVRLEKSRPISKTKSFVALPVIARAA 129

Query: 139 KQKVAEAGAGE-LGIPLESQQ 157
           ++  AEAG  E LG+PLESQQ
Sbjct: 130 RK--AEAGGDELLGLPLESQQ 147

[Close]

BLAST of Lag0003006 vs. ExPASy Swiss-Prot
Match: P82137 (30S ribosomal protein S17, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS17 PE=1 SV=2)

HSP 1 Score: 159.5 bits (402), Expect = 3.2e-38
Identity = 98/162 (60.49%), Postives = 113/162 (69.75%), Query Frame = 0


Query: 7   SSSLLQIPPLQRLKNLSISTSFLHGST----------PLSFLSKPSPSLPQTLNFLPSIR 66
           S SLL+ PPL    + S    FLHG+T           LS  S P PS   T  F P I+
Sbjct: 4   SFSLLK-PPL----SSSNPNPFLHGTTTKLSLLPSFSALSLSSSP-PSSSTTYTF-PVIK 63

Query: 67  AMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEK 126
           AMRS+QG+V+CATNDKTV VEVVRLAPHPKYKRR+R KKKYQAHDPDNQFKVGD+V+L+K
Sbjct: 64  AMRSMQGKVICATNDKTVNVEVVRLAPHPKYKRRVRKKKKYQAHDPDNQFKVGDWVQLDK 123

Query: 127 CRPISKMKTFLAIPVPARNS---KQKVAEAGAGELGIPLESQ 156
           CRPISK KTFLA+    R S   + K  +A + ELGIPLESQ
Sbjct: 124 CRPISKTKTFLAVAPEGRQSSATRPKPIQAASDELGIPLESQ 158

[Close]

BLAST of Lag0003006 vs. ExPASy Swiss-Prot
Match: P17092 (30S ribosomal protein S17, chloroplastic (Fragment) OS=Pisum sativum OX=3888 GN=RPS17 PE=2 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 2.2e-34
Identity = 76/126 (60.32%), Postives = 101/126 (80.16%), Query Frame = 0


Query: 32  STPLSFLSKPSPSLPQTLNFLPSIRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRI 91
           S P+S  S  + +  ++L F P+I+AM++++G+VVCA+ +KTVAVEV RLAPHPKY++RI
Sbjct: 15  SNPIS--SPQTQTQTRSLPF-PAIKAMKTMEGKVVCASGNKTVAVEVTRLAPHPKYQKRI 74

Query: 92  RIKKKYQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARNSKQKVAEAGAGELGIP 151
           R+KKKYQAHDP+N FKVGD V+L K RPISK KTFLA+P P+R SK+      +GELGIP
Sbjct: 75  RLKKKYQAHDPENDFKVGDIVQLLKTRPISKKKTFLAVPAPSRKSKK---AGSSGELGIP 134

Query: 152 LESQQQ 158
           L+SQQ+
Sbjct: 135 LQSQQE 134

[Close]

BLAST of Lag0003006 vs. ExPASy Swiss-Prot
Match: Q9ZST1 (30S ribosomal protein S17, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=RPS17 PE=2 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 1.8e-28
Identity = 67/103 (65.05%), Postives = 78/103 (75.73%), Query Frame = 0


Query: 55  IRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVEL 114
           I+A + L GRVV    DKTV VEVVRLAPHPKYKRR RIKKKYQAHDPDNQFKVGD VEL
Sbjct: 34  IQAAKQLTGRVVTTKADKTVGVEVVRLAPHPKYKRRERIKKKYQAHDPDNQFKVGDVVEL 93

Query: 115 EKCRPISKMKTFLAIPVPARNSKQKVAEAGAGELGIPLESQQQ 158
            + RPISK K FLA+P+P R++++K       +L  PL+SQ Q
Sbjct: 94  RRSRPISKTKHFLAVPLPPRDTRRK------SQLLPPLQSQSQ 130

[Close]

BLAST of Lag0003006 vs. ExPASy Swiss-Prot
Match: Q9TJN6 (30S ribosomal protein S17, chloroplastic OS=Zea mays OX=4577 GN=RPS17 PE=2 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 2.3e-28
Identity = 70/110 (63.64%), Postives = 81/110 (73.64%), Query Frame = 0


Query: 32  STPLSFLSKPSPSLPQTLNFLPSIR--AMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKR 91
           S+P   +S P P L  +    P++R  A R L GRVV    DKTV VEVVRLAPHPKYKR
Sbjct: 5   SSPFVSVSPPPPPL-SSHGARPALRIEAARQLTGRVVTTKADKTVGVEVVRLAPHPKYKR 64

Query: 92  RIRIKKKYQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARNSKQK 140
           R RIKKKYQAHDPDNQFKVGD VEL+  RPISK K FLAIP+P R++++K
Sbjct: 65  RERIKKKYQAHDPDNQFKVGDVVELQPSRPISKTKHFLAIPLPPRDTRRK 113

The following BLAST results are available for this feature:

BLAST of Lag0003006 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023000403.1	3.9e-73	93.04	30S ribosomal protein S17, chloroplastic-like [Cucurbita maxima]	[more]
XP_022964008.1	1.5e-72	92.41	30S ribosomal protein S17, chloroplastic-like [Cucurbita moschata]	[more]
XP_023513636.1	4.3e-72	91.77	30S ribosomal protein S17, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]
XP_023548191.1	2.8e-71	91.88	30S ribosomal protein S17, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]
KAG6593467.1	8.0e-71	91.08	30S ribosomal protein S17, chloroplastic, partial [Cucurbita argyrosperma subsp....	[more]

BLAST of Lag0003006 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P16180	7.4e-43	68.79	30S ribosomal protein S17, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS1...	[more]
P82137	3.2e-38	60.49	30S ribosomal protein S17, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS17 P...	[more]
P17092	2.2e-34	60.32	30S ribosomal protein S17, chloroplastic (Fragment) OS=Pisum sativum OX=3888 GN=...	[more]
Q9ZST1	1.8e-28	65.05	30S ribosomal protein S17, chloroplastic OS=Oryza sativa subsp. japonica OX=3994...	[more]
Q9TJN6	2.3e-28	63.64	30S ribosomal protein S17, chloroplastic OS=Zea mays OX=4577 GN=RPS17 PE=2 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000266	Ribosomal protein S17/S11	PRINTS	PR00973	RIBOSOMALS17	coord: 119..126 score: 52.75 coord: 109..119 score: 52.55 coord: 77..100 score: 34.25
IPR000266	Ribosomal protein S17/S11	PFAM	PF00366	Ribosomal_S17	coord: 63..126 e-value: 5.7E-24 score: 84.0
IPR000266	Ribosomal protein S17/S11	PANTHER	PTHR10744	40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER	coord: 37..157
None	No IPR available	GENE3D	2.40.50.140		coord: 57..148 e-value: 2.4E-25 score: 90.2
None	No IPR available	PANTHER	PTHR10744:SF7	30S RIBOSOMAL PROTEIN S17, CHLOROPLASTIC	coord: 37..157
IPR019979	Ribosomal protein S17, conserved site	PROSITE	PS00056	RIBOSOMAL_S17	coord: 109..121
IPR019984	30S ribosomal protein S17	HAMAP	MF_01345_B	Ribosomal_S17_B	coord: 58..133 score: 17.915262
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 58..134

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0003006.1	Lag0003006.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032544	plastid translation
biological_process	GO:0006412	translation
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome