Lag0002973 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0002973
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	thionin-like protein 2
Location	chr4: 47129987 .. 47130724 (+)
RNA-Seq Expression	Lag0002973
Synteny	Lag0002973

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGTCCCTTGTTCTCATTTGCTTCATTCTGAGCTTAGTTGCAGGCAGGTCCACAGCCTCGTTTGGGAAGTGCTACGCCAAGTGCTTCGTTGTGTGTGCTATCACACCAGGCATCCCCATCGGCACCTGCGGAGCAAAGTGCTTGGGAGATTGTCTTTTCATTGCATCAGCTCCTATGGATTTGAACCACATGGACACTCATTACTTCTGCAAACTTGGTTGTGCCACTACTCTCTGCACCAAATTCAGCACCAAGAAAGATCCCGGTGAGAAAATTTCTAATACTCTCGTAGTATCTATTTTGTAATGTTCATAAATTCATTTTTTATGGTGTTGGACTCCACGTCATTAACGATGTAGTTGACAGTGAAACAGAGTAATATGGGCAAGTTTTTCATACTCATGTAGTATTAGAAATTTTTCTATCCAAAGATGGGTATTTTTTATACTTTTTAGAGAAAATTTTAATATATTTGTAGTATTGCCTCACTTTTTTGTCTACGAATTTTTGTACATGACTAAATTTTTATTTTCATTGGACCTGACGTCGTTCTAAAATAGTACTGATAATAAATGAGAGTATTATCCATACTAGATTTAATGCTCTTTCTCTCTTCTTTCTTTCTCTAGTTTTGATGGATGTTTTCATTTTGTGTTTTTAATTATGAATGTGGCAGCTGAGAAGAAAGTGGAAAGCTGTGTGGACTCGTGCTCTCGAACATGCATAAAAGCTTAG

mRNA sequence

ATGAAGTCCCTTGTTCTCATTTGCTTCATTCTGAGCTTAGTTGCAGGCAGGTCCACAGCCTCGTTTGGGAAGTGCTACGCCAAGTGCTTCGTTGTGTGTGCTATCACACCAGGCATCCCCATCGGCACCTGCGGAGCAAAGTGCTTGGGAGATTGTCTTTTCATTGCATCAGCTCCTATGGATTTGAACCACATGGACACTCATTACTTCTGCAAACTTGGTTGTGCCACTACTCTCTGCACCAAATTCAGCACCAAGAAAGATCCCGCTGAGAAGAAAGTGGAAAGCTGTGTGGACTCGTGCTCTCGAACATGCATAAAAGCTTAG

Coding sequence (CDS)

ATGAAGTCCCTTGTTCTCATTTGCTTCATTCTGAGCTTAGTTGCAGGCAGGTCCACAGCCTCGTTTGGGAAGTGCTACGCCAAGTGCTTCGTTGTGTGTGCTATCACACCAGGCATCCCCATCGGCACCTGCGGAGCAAAGTGCTTGGGAGATTGTCTTTTCATTGCATCAGCTCCTATGGATTTGAACCACATGGACACTCATTACTTCTGCAAACTTGGTTGTGCCACTACTCTCTGCACCAAATTCAGCACCAAGAAAGATCCCGCTGAGAAGAAAGTGGAAAGCTGTGTGGACTCGTGCTCTCGAACATGCATAAAAGCTTAG

Protein sequence

MKSLVLICFILSLVAGRSTASFGKCYAKCFVVCAITPGIPIGTCGAKCLGDCLFIASAPMDLNHMDTHYFCKLGCATTLCTKFSTKKDPAEKKVESCVDSCSRTCIKA

Homology

[Close]

BLAST of Lag0002973 vs. NCBI nr
Match: XP_038899787.1 (thionin-like protein 2 [Benincasa hispida])

HSP 1 Score: 211.5 bits (537), Expect = 3.7e-51
Identity = 96/108 (88.89%), Postives = 105/108 (97.22%), Query Frame = 0


Query: 1   MKSLVLICFILSLVAGRSTASFGKCYAKCFVVCAITPGIPIGTCGAKCLGDCLFIASAPM 60
           MKS++LICFI+SLV GRSTASFGKCYAKCFVVCAITPGIPIGTCGAKCLGDCLFIAS+P+
Sbjct: 1   MKSVILICFIMSLVVGRSTASFGKCYAKCFVVCAITPGIPIGTCGAKCLGDCLFIASSPL 60

Query: 61  DLNHMDTHYFCKLGCATTLCTKFSTKKDPAEKKVESCVDSCSRTCIKA 109
           D NH+DTHYFCKLGCAT+LCTKFSTKKDPAEKKVESCV+SC +TCIKA
Sbjct: 61  DFNHLDTHYFCKLGCATSLCTKFSTKKDPAEKKVESCVNSCGQTCIKA 108

[Close]

BLAST of Lag0002973 vs. NCBI nr
Match: XP_023000407.1 (thionin-like protein 2 [Cucurbita maxima])

HSP 1 Score: 209.1 bits (531), Expect = 1.8e-50
Identity = 95/108 (87.96%), Postives = 104/108 (96.30%), Query Frame = 0


Query: 1   MKSLVLICFILSLVAGRSTASFGKCYAKCFVVCAITPGIPIGTCGAKCLGDCLFIASAPM 60
           MKS+V+ICFILSLVAGRSTASFGKCYAKCF+VCAITPG+PIGTCG KCL DCLF+ASAP 
Sbjct: 36  MKSVVVICFILSLVAGRSTASFGKCYAKCFIVCAITPGVPIGTCGGKCLADCLFLASAPR 95

Query: 61  DLNHMDTHYFCKLGCATTLCTKFSTKKDPAEKKVESCVDSCSRTCIKA 109
           DLNH+DTHYFCKLGCAT+LCTKFSTK DPAEKKVESCV+SCSRTC+KA
Sbjct: 96  DLNHLDTHYFCKLGCATSLCTKFSTKTDPAEKKVESCVNSCSRTCLKA 143

[Close]

BLAST of Lag0002973 vs. NCBI nr
Match: KAG6593441.1 (Thionin-like protein 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 207.6 bits (527), Expect = 5.4e-50
Identity = 95/108 (87.96%), Postives = 103/108 (95.37%), Query Frame = 0


Query: 1   MKSLVLICFILSLVAGRSTASFGKCYAKCFVVCAITPGIPIGTCGAKCLGDCLFIASAPM 60
           MKS+V+ICFILSLVAGRSTASFGKCYAKCF+VCAITPG+PIGTCG KCL DCLF ASAP 
Sbjct: 1   MKSIVVICFILSLVAGRSTASFGKCYAKCFIVCAITPGVPIGTCGGKCLADCLFPASAPR 60

Query: 61  DLNHMDTHYFCKLGCATTLCTKFSTKKDPAEKKVESCVDSCSRTCIKA 109
           DLNH+DTHYFCKLGCAT+LCTKFSTK DPAEKKVESCV+SCSRTC+KA
Sbjct: 61  DLNHLDTHYFCKLGCATSLCTKFSTKTDPAEKKVESCVNSCSRTCLKA 108

[Close]

BLAST of Lag0002973 vs. NCBI nr
Match: KAG7025781.1 (Thionin-like protein 2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 207.6 bits (527), Expect = 5.4e-50
Identity = 95/108 (87.96%), Postives = 103/108 (95.37%), Query Frame = 0


Query: 1   MKSLVLICFILSLVAGRSTASFGKCYAKCFVVCAITPGIPIGTCGAKCLGDCLFIASAPM 60
           MKS+V+ICFILSLVAGRSTASFGKCYAKCF+VCAITPG+PIGTCG KCL DCLF ASAP 
Sbjct: 1   MKSIVVICFILSLVAGRSTASFGKCYAKCFIVCAITPGVPIGTCGGKCLADCLFPASAPT 60

Query: 61  DLNHMDTHYFCKLGCATTLCTKFSTKKDPAEKKVESCVDSCSRTCIKA 109
           DLNH+DTHYFCKLGCAT+LCTKFSTK DPAEKKVESCV+SCSRTC+KA
Sbjct: 61  DLNHLDTHYFCKLGCATSLCTKFSTKTDPAEKKVESCVNSCSRTCLKA 108

[Close]

BLAST of Lag0002973 vs. NCBI nr
Match: KAG7014098.1 (Thionin-like protein 2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 193.0 bits (489), Expect = 1.4e-45
Identity = 88/108 (81.48%), Postives = 98/108 (90.74%), Query Frame = 0


Query: 1   MKSLVLICFILSLVAGRSTASFGKCYAKCFVVCAITPGIPIGTCGAKCLGDCLFIASAPM 60
           MKS+V+ICFILSL+AGRSTASF KCYAKCF+ CAITPGI +GTCGA CL  CLFIASAPM
Sbjct: 1   MKSVVIICFILSLMAGRSTASFRKCYAKCFIACAITPGITLGTCGATCLAKCLFIASAPM 60

Query: 61  DLNHMDTHYFCKLGCATTLCTKFSTKKDPAEKKVESCVDSCSRTCIKA 109
           D NHM+THYFCKLGCAT++CTKFSTK DP+EKKVE CVDSC+ TCIKA
Sbjct: 61  DFNHMNTHYFCKLGCATSMCTKFSTKNDPSEKKVERCVDSCAGTCIKA 108

[Close]

BLAST of Lag0002973 vs. ExPASy Swiss-Prot
Match: A8MRP4 (Thionin-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=At1g12663 PE=3 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.6e-09
Identity = 39/109 (35.78%), Postives = 57/109 (52.29%), Query Frame = 0


Query: 5   VLICFILSLVAGRSTAS---FGKCYAKCFVVCAITPGIP-IGTCGAKCLGDCLFIASAP- 64
           V+I  ++  +  ++ A    F +CY  C V C      P    C   C  +CL   S P 
Sbjct: 5   VMIVMVIGNLLAQTAAQKIPFKECYPACLVECKAGSKFPKYLKCPFTCTKECLQQPSPPS 64

Query: 65  MDLNHMD-THYFCKLGCATTLCTKFSTKKDPAEKKVESCVDSCSRTCIK 108
           +  N++D + YFCKLGCAT  C   S+ ++P  ++V +CVDSCS  C K
Sbjct: 65  VSSNNIDESDYFCKLGCATYHCVSLSSIQNPNVERVSACVDSCSNKCTK 113

The following BLAST results are available for this feature:

BLAST of Lag0002973 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038899787.1	3.7e-51	88.89	thionin-like protein 2 [Benincasa hispida]	[more]
XP_023000407.1	1.8e-50	87.96	thionin-like protein 2 [Cucurbita maxima]	[more]
KAG6593441.1	5.4e-50	87.96	Thionin-like protein 2, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7025781.1	5.4e-50	87.96	Thionin-like protein 2, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG7014098.1	1.4e-45	81.48	Thionin-like protein 2 [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of Lag0002973 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A8MRP4	1.6e-09	35.78	Thionin-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=At1g12663 PE=3 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36312:SF1	THIONIN-LIKE PROTEIN 1	coord: 2..107
IPR038975	Thionin-like protein	PANTHER	PTHR36312	THIONIN-LIKE PROTEIN 1	coord: 2..107

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0002973.1	Lag0002973.1	mRNA