Lag0002936 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0002936
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Histone H2A
Location	chr4: 46801689 .. 46805812 (+)
RNA-Seq Expression	Lag0002936
Synteny	Lag0002936

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGGGGAAGGGAGCCAAGGGTCTGATAATGGGCAAATCTGCCTCCAACAACAAGGATAAGGATAAAAAGAAGCCCGTCTCTCGCTCTTCTCGCGCCGGTCTCCAGGTCCTTCTTTCTCTACACGCTTCAATACTTGTATCTCTACGTTCTTTATGTGGGTCTTGTGTGGATCTGTGTTTCTGGCGCTTGTTTGAGCTCCATGCCGGTTTTGACCCAACAAAGACACGAATTTTCTAATTTAGATGCGTTTCAAGCCTTCCAAGCCTTAGAGTTTGGACATTGGGGGGTTTTTCTTTATTTTAAATTTCGTGTTTGGAAGTTTATAGTTGTTTATTTCTGATGGGTCCTCCTTTTCGTTCTCTCTTTTCTCCCTGTGTTTCTTGTTTTCGTCTCTCTCGAGCTGTATGGTGAGTTCTAAGTTTGTTTCGTCATGGGTTCTGCTTAGTGGAGCAGAAAGAGTGTGAGATCGACCGTTGATAATATTTTGGAGGTGGTTGTCTATAAAGGGGGAGCTCGAAGTCCTTCTCTTTGATGTTAGAAGTAGGTGCATGCCTTTGGGTTTGTGGTATCTTGAATGTGTTGCTGTGATCCTCTTTTAAGCCCGTGTTTCTCTGTGCGTCTCGGTTTCTTAATATTCCTCGGTGGTTGGAGTTGTCCTGCGGCCAAGGTTCTTTTGTTCAGGTCATGAAATGGCTGGAAAGAAGGAACTGCTATAAGACTTAGACTGATATTGTTATACTTATAAGTGAAGCATGCAAGATCTCTTTTTCTTGCTATTGAAGCTGCTTGTTGAAAGACGCACCAGGTGAATGTATTGGAGGTGGATTGGGATTTGACCATTTCTATGTCTAGAGCTATCATAATTTATTGGTTGGCAGTTCTCGAGGTATTTAGAGAACTTGTTCGCTTTCATGGTGCAAAGTGTGTTTCCTACCGTTAAGGGTGATAGAAACTACTTACGGAGTTGAACTAAAGGTTGTATTAAAAACTTGAAAACATAAAATACAGTATATTATCCCCAAGTAATTTGAGAAACTAGGACAATTCTTAACCACCATTCACTAACTAACTCTTTAGTCAATGATTCATACAAATCTACCATCAGCTCACGCCCTTTGTACATTGTCAATGATACCTTTGCTGGCAATCTCCCTTTTCACTTGTATTTTTTCCTCTCTCCATTGCTATAATATATTTCTCTCTGAGACTTGCACTATTATGAGAAGGTATGTACCCTGTTCAATCAAAGAAGGGTTTTTTTTGACCTCTCTTCCTTTATGATTCTAGTTCCAATCAAACATTCTGTCATTGGCATAGATCTCCTTCAGATCTGTTCTCTTTTTCATCAACTATTTGTCTTGCTTCTATTGCATTCATTTTCACCATATGTTCTCAATCAGACATCAATTCCATGCCACTCCACCCATGCCTCATGCATCGTTGCCAGATGGTATGAATCTGTATTCCTTTGGCTTGGTATGTGTGGTTTTCTTACCCTTTCACATGGAGGTGGATTTTATTACTAAAAGGGAAAAGAAATCTCCCTTTAGTTTGATTTGAGCCAGACATTATTACCCTAATAAGTGATTCTTAACCGCTAGAGTCTCTTCATGAGTTTTGTTCTGTGTTCTGTAGCTCTTTTTTGGCTTAAGCTTTTGCTTTTATTCAAAATAAGGGTGGAAGATAGATTGTTTGGAGACTTCTGTTTTGCTTTGATGGCGAAGTCAAGCTTTAAGAGGATTTCAGAGTATGTTCAATGTTTTGCTGGAATTTTGTTAGATTATGGGATGGGGCTACTTTTCCTTTGACAGTAATTGCTGGTTTTCATTGTCTGGAACATACTTTAAATCTTTCATGATTTTTTTTTCTTTGCCTACGTTTGCCTCAAATGACCTCTTGGGGGTTGCCAGAATTTGTGTAACTCTGTAACCCAGTGACTGACAAAGTTGTGGAAAGTTATTGTATTAGAAACTCCTATCTTTGAAAATAGAGACTGATCCAAGCTGTTTTAACCAATATTTGTGTACACTACCTCTTTTTATAAGTTCTCCGCCACTACTATGTTGATTAAATTAATTATCAGGAACTTTTAATGGGAAGGTTTATATCTGGATGGAGAAATTGTCTCCTACTCTAAACTTTGGATGGTCTTGGAATTGGTATTTTGAGCTTGAATTACACAACTTTGATTTGTAAGGTTGTGAAGATATTGGATAGAATAACTCTCTAATTGTGGCATAGGATCATAGTTGATAAATATGACCAGAAATCTTTTAGGTAGCTTATTAACAATGAACAACCGTGGTGTATTAAATTTGCTGGTCATCAGTTGTAACAAACTATACTCAATTATTCAAGCCAGTCTAGAAGGATAGTGGGGGATAATTGAAGAGTCCTAAGTTTTGTATGGACAATTGGATCAAATGATGAAACAAATGGTAAATTTCCAGTACTCTACATCACATAACATTCATTGCACTCATACCATGTATTAAAAAAGAATGAGAATTTGGTAGTTGGACTAGATTATATGACTTCAGTTGATGTGGAATTTTAGAATTGATGACTTCCATCCTTTCTTCAACCTTAGGATTTTCCCTGTAACATAACCCAGACATAAGAATTTGAAGATTTGAAAAGTCTGGGAATTTGTTTTGGTAAGTCTAAGATCGAGTGCCTTTTGAACGGTCTTGAGTATGTACAGCCATTTCTTCACTTAACTCTTTGTTTTGTAAGCCACTGGAAAATCATCACTTCATTTTCATATAGAAGAGGAATCCCAACACTGAGCTATCTCCTGCCTTGTGGTTTCTGTTTTGCAATTGATAAAGTGAAAATCAGAAATACGTTCACTCATATTGTGCTTTTCTGTAAACTCCTTGTGAGGGAATATCAGATTTCAGTACATTTCTTACTGCATCAGTGAGAAGAGTTTCTTTTTCTTTGCCAGTAATATTACACTCCAATGAGGAAGAAGAAGCTATTGTTGCTTATATATGTATGTACTATGTATATCTTGTTATGCCTTTATTGATTTTCCCCCATCTTTCTTGCTTTCCTTTTGTTTTCTTCTTAACCCTACTTTTCTTGTCTGATCAGTATCCAACTTATGGTGGATATGTGGCGTATGAAAAAATTTTCAGAGACTAACGCTTTTGTAGATGCCTCAATTCTTTAGCCTTTCTTTCTGTATACCTTCTGAACCACTGGCTTCTCAATTTAATTTCCCTCTGCATTTTTGTTTTGATGTTTTCATTTCGATGTCGTTGATAGTTTCTTCTGCTTTGCATTAGTATATTCCTTATGGTATACTACAAAAATGTTATCACTGCTTGTGGAATGATTACAATAAGGTGAGGGTGAGGTTTTATTGCATATCCTGTAAAGAATAACAAGGCATTATTGCCTGAAGTGTTTTTTAGATGACTTTATAGCATTCTTATGTGGAGTAATTTTTCTATAAGAATTTTTAGAGAAAACAGACAAGTATGGGAAGATTATGAAATAATGAATGATGATTTTAAATGAGTTAAAAACAGTTACTAGTAGTATGAAGGTTATGCCCATTTTTAACATTTTAGAGAGAATTACTTCGCATTTTCTTTATCAAGATCAAGTGAGTTGCATTGTATAAAAAAGGCATTTTAGATTAGTTAACTCTCAAGAGTACAAGTAGTACAAGTAGTGCACCGATCCAATGAGGCAGAATGGCCTCTATTATTCTCTATATTTGTTTGTTATCTTTGAAATATCAGTGCTTTAGGCCGTGGAAGCATTTTTTCATTTTCTTACTGTTGAGTATGGTGTTGAATGGCTTGCTGCAGTTTCCAGTGGGGAGGGTTCACCGGCAATTGAAATCAAGGGTTGCTGCAAACGGTCGAGTCGGGGCTACAGCAGCCGTATACACAGCAGCGATCTTGGAGTACCTGACTGCAGAAGTGTTGGAGCTGGCCGGAAACGCGAGCAAGGATCTGAAGGTGAAGCGTATAACACCAAGGCATTTGCAGCTTGCAATCAGAGGAGACGAAGAGCTGGACACACTCATTAAAGGAACCATTGCTGGTGGAGGAGTGATCCCCCACATCCACAAGTCACTCATTAACAAATCCTCCAAGGAATAG

mRNA sequence

ATGTCGGGGAAGGGAGCCAAGGGTCTGATAATGGGCAAATCTGCCTCCAACAACAAGGATAAGGATAAAAAGAAGCCCGTCTCTCGCTCTTCTCGCGCCGGTCTCCAGTTTCCAGTGGGGAGGGTTCACCGGCAATTGAAATCAAGGGTTGCTGCAAACGGTCGAGTCGGGGCTACAGCAGCCGTATACACAGCAGCGATCTTGGAGTACCTGACTGCAGAAGTGTTGGAGCTGGCCGGAAACGCGAGCAAGGATCTGAAGGTGAAGCGTATAACACCAAGGCATTTGCAGCTTGCAATCAGAGGAGACGAAGAGCTGGACACACTCATTAAAGGAACCATTGCTGGTGGAGGAGTGATCCCCCACATCCACAAGTCACTCATTAACAAATCCTCCAAGGAATAG

Coding sequence (CDS)

ATGTCGGGGAAGGGAGCCAAGGGTCTGATAATGGGCAAATCTGCCTCCAACAACAAGGATAAGGATAAAAAGAAGCCCGTCTCTCGCTCTTCTCGCGCCGGTCTCCAGTTTCCAGTGGGGAGGGTTCACCGGCAATTGAAATCAAGGGTTGCTGCAAACGGTCGAGTCGGGGCTACAGCAGCCGTATACACAGCAGCGATCTTGGAGTACCTGACTGCAGAAGTGTTGGAGCTGGCCGGAAACGCGAGCAAGGATCTGAAGGTGAAGCGTATAACACCAAGGCATTTGCAGCTTGCAATCAGAGGAGACGAAGAGCTGGACACACTCATTAAAGGAACCATTGCTGGTGGAGGAGTGATCCCCCACATCCACAAGTCACTCATTAACAAATCCTCCAAGGAATAG

Protein sequence

MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKSRVAANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE

Homology

[Close]

BLAST of Lag0002936 vs. NCBI nr
Match: XP_022152569.1 (probable histone H2A variant 3 [Momordica charantia] >XP_030526377.1 probable histone H2A variant 3 [Rhodamnia argentea] >XP_038899732.1 probable histone H2A variant 3 [Benincasa hispida] >KAF8011693.1 hypothetical protein BT93_J2080 [Corymbia citriodora subsp. variegata])

HSP 1 Score: 253.8 bits (647), Expect = 8.1e-64
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0


Query: 1   MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKSRVAANGRVGATA 60
           MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKSRVAANGRVGATA
Sbjct: 1   MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKSRVAANGRVGATA 60

Query: 61  AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 120
           AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI
Sbjct: 61  AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 120

Query: 121 PHIHKSLINKSSKE 135
           PHIHKSLINKSSKE
Sbjct: 121 PHIHKSLINKSSKE 134

[Close]

BLAST of Lag0002936 vs. NCBI nr
Match: XP_022953233.1 (probable histone H2A variant 3 [Cucurbita moschata] >XP_022959863.1 probable histone H2A variant 3 [Cucurbita moschata] >XP_022991416.1 probable histone H2A variant 3 [Cucurbita maxima] >XP_023004192.1 probable histone H2A variant 3 [Cucurbita maxima] >XP_023513932.1 probable histone H2A variant 3 [Cucurbita pepo subsp. pepo] >XP_023548701.1 probable histone H2A variant 3 [Cucurbita pepo subsp. pepo] >KAG6593413.1 putative histone H2A variant 3, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014117.1 putative histone H2A variant 3, partial [Cucurbita argyrosperma subsp. argyrosperma] >KAG7025761.1 putative histone H2A variant 3 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 252.7 bits (644), Expect = 1.8e-63
Identity = 133/134 (99.25%), Postives = 134/134 (100.00%), Query Frame = 0


Query: 1   MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKSRVAANGRVGATA 60
           MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQFPVGRVHRQLK+RVAANGRVGATA
Sbjct: 1   MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKTRVAANGRVGATA 60

Query: 61  AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 120
           AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI
Sbjct: 61  AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 120

Query: 121 PHIHKSLINKSSKE 135
           PHIHKSLINKSSKE
Sbjct: 121 PHIHKSLINKSSKE 134

[Close]

BLAST of Lag0002936 vs. NCBI nr
Match: XP_004135834.1 (probable histone H2A variant 3 isoform X2 [Cucumis sativus] >XP_008461070.2 PREDICTED: probable histone H2A variant 3 [Cucumis melo] >KAA0058784.1 putative histone H2A variant 3 [Cucumis melo var. makuwa] >KGN45310.1 hypothetical protein Csa_015723 [Cucumis sativus] >TYK10578.1 putative histone H2A variant 3 [Cucumis melo var. makuwa])

HSP 1 Score: 252.7 bits (644), Expect = 1.8e-63
Identity = 133/134 (99.25%), Postives = 134/134 (100.00%), Query Frame = 0


Query: 1   MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKSRVAANGRVGATA 60
           MSGKGAKGLIMGKSA+NNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKSRVAANGRVGATA
Sbjct: 1   MSGKGAKGLIMGKSAANNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKSRVAANGRVGATA 60

Query: 61  AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 120
           AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI
Sbjct: 61  AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 120

Query: 121 PHIHKSLINKSSKE 135
           PHIHKSLINKSSKE
Sbjct: 121 PHIHKSLINKSSKE 134

[Close]

BLAST of Lag0002936 vs. NCBI nr
Match: XP_010033915.1 (probable histone H2A variant 3 [Eucalyptus grandis] >XP_030464610.1 probable histone H2A variant 3 [Syzygium oleosum] >KCW53786.1 hypothetical protein EUGRSUZ_J03033 [Eucalyptus grandis])

HSP 1 Score: 251.9 bits (642), Expect = 3.1e-63
Identity = 133/134 (99.25%), Postives = 134/134 (100.00%), Query Frame = 0


Query: 1   MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKSRVAANGRVGATA 60
           MSGKGAKGLIMGKSASN+KDKDKKKPVSRSSRAGLQFPVGRVHRQLKSRVAANGRVGATA
Sbjct: 1   MSGKGAKGLIMGKSASNSKDKDKKKPVSRSSRAGLQFPVGRVHRQLKSRVAANGRVGATA 60

Query: 61  AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 120
           AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI
Sbjct: 61  AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 120

Query: 121 PHIHKSLINKSSKE 135
           PHIHKSLINKSSKE
Sbjct: 121 PHIHKSLINKSSKE 134

[Close]

BLAST of Lag0002936 vs. NCBI nr
Match: XP_031406453.1 (probable histone H2A variant 3 [Punica granatum] >OWM81812.1 hypothetical protein CDL15_Pgr007850 [Punica granatum] >PKI43477.1 hypothetical protein CRG98_036234 [Punica granatum])

HSP 1 Score: 245.4 bits (625), Expect = 2.9e-61
Identity = 132/134 (98.51%), Postives = 132/134 (98.51%), Query Frame = 0


Query: 1   MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKSRVAANGRVGATA 60
           MSGKGAKGLIMGKSA  NKDKDKKKPVSRSSRAGLQFPVGRVHRQLKSRVAANGRVGATA
Sbjct: 1   MSGKGAKGLIMGKSA--NKDKDKKKPVSRSSRAGLQFPVGRVHRQLKSRVAANGRVGATA 60

Query: 61  AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 120
           AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI
Sbjct: 61  AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 120

Query: 121 PHIHKSLINKSSKE 135
           PHIHKSLINKSSKE
Sbjct: 121 PHIHKSLINKSSKE 132

[Close]

BLAST of Lag0002936 vs. ExPASy Swiss-Prot
Match: Q9C944 (Probable histone H2A variant 3 OS=Arabidopsis thaliana OX=3702 GN=At1g52740 PE=1 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 5.6e-60
Identity = 120/134 (89.55%), Postives = 129/134 (96.27%), Query Frame = 0


Query: 1   MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKSRVAANGRVGATA 60
           MSGKGAKGLIMGK + ++KDKDKKKP++RSSRAGLQFPVGRVHR LK+R  A+GRVGATA
Sbjct: 1   MSGKGAKGLIMGKPSGSDKDKDKKKPITRSSRAGLQFPVGRVHRLLKTRSTAHGRVGATA 60

Query: 61  AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 120
           AVYTAAILEYLTAEVLELAGNASKDLKVKRI+PRHLQLAIRGDEELDTLIKGTIAGGGVI
Sbjct: 61  AVYTAAILEYLTAEVLELAGNASKDLKVKRISPRHLQLAIRGDEELDTLIKGTIAGGGVI 120

Query: 121 PHIHKSLINKSSKE 135
           PHIHKSLINKS+KE
Sbjct: 121 PHIHKSLINKSAKE 134

[Close]

BLAST of Lag0002936 vs. ExPASy Swiss-Prot
Match: O23628 (Histone H2A variant 1 OS=Arabidopsis thaliana OX=3702 GN=H2AV PE=1 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 9.0e-58
Identity = 115/136 (84.56%), Postives = 130/136 (95.59%), Query Frame = 0


Query: 1   MSGKGAKGLIMGK--SASNNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKSRVAANGRVGA 60
           M+GKG KGL+  K  +A+ +KDKDKKKP+SRS+RAG+QFPVGR+HRQLK+RV+A+GRVGA
Sbjct: 1   MAGKGGKGLVAAKTMAANKDKDKDKKKPISRSARAGIQFPVGRIHRQLKTRVSAHGRVGA 60

Query: 61  TAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG 120
           TAAVYTA+ILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG
Sbjct: 61  TAAVYTASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG 120

Query: 121 VIPHIHKSLINKSSKE 135
           VIPHIHKSLINK++KE
Sbjct: 121 VIPHIHKSLINKTTKE 136

[Close]

BLAST of Lag0002936 vs. ExPASy Swiss-Prot
Match: Q8S857 (Probable histone H2A variant 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os10g0418000 PE=2 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 9.9e-57
Identity = 118/139 (84.89%), Postives = 129/139 (92.81%), Query Frame = 0


Query: 1   MSGKGAKGLIMGKS----ASNNKDKDKKK-PVSRSSRAGLQFPVGRVHRQLKSRVAANGR 60
           M+GKG KGL+  K+    A+ +KDKD+KK PVSRSSRAG+QFPVGR+HRQLK RV+ANGR
Sbjct: 1   MAGKGGKGLLAAKTTAAKAAADKDKDRKKAPVSRSSRAGIQFPVGRIHRQLKGRVSANGR 60

Query: 61  VGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIA 120
           VGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIA
Sbjct: 61  VGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIA 120

Query: 121 GGGVIPHIHKSLINKSSKE 135
           GGGVIPHIHKSLINK++KE
Sbjct: 121 GGGVIPHIHKSLINKTAKE 139

[Close]

BLAST of Lag0002936 vs. ExPASy Swiss-Prot
Match: Q8H7Y8 (Probable histone H2A variant 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0162200 PE=2 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 1.3e-56
Identity = 119/138 (86.23%), Postives = 128/138 (92.75%), Query Frame = 0


Query: 1   MSGKGAKGLIMGKSA---SNNKDKDKKK-PVSRSSRAGLQFPVGRVHRQLKSRVAANGRV 60
           M+GKG KGL+  K+    S +KDKDKKK PVSRSSRAGLQFPVGR+HRQLKSR +A+GRV
Sbjct: 1   MAGKGGKGLLAAKTTAAKSADKDKDKKKAPVSRSSRAGLQFPVGRIHRQLKSRASAHGRV 60

Query: 61  GATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAG 120
           GATAAVY+AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAG
Sbjct: 61  GATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAG 120

Query: 121 GGVIPHIHKSLINKSSKE 135
           GGVIPHIHKSLINK+SKE
Sbjct: 121 GGVIPHIHKSLINKTSKE 138

[Close]

BLAST of Lag0002936 vs. ExPASy Swiss-Prot
Match: Q84MP7 (Probable histone H2A variant 3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0743400 PE=2 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 1.3e-56
Identity = 118/137 (86.13%), Postives = 123/137 (89.78%), Query Frame = 0


Query: 1   MSGKGAKGLIMGKSA---SNNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKSRVAANGRVG 60
           M+GKG KGL+  K+    S  KDK KK PVSRSSRAGLQFPVGR+HRQLK R  ANGRVG
Sbjct: 1   MAGKGGKGLLAAKTTAAKSAEKDKGKKAPVSRSSRAGLQFPVGRIHRQLKQRTQANGRVG 60

Query: 61  ATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGG 120
           ATAAVY+AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGG
Sbjct: 61  ATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGG 120

Query: 121 GVIPHIHKSLINKSSKE 135
           GVIPHIHKSLINKSSKE
Sbjct: 121 GVIPHIHKSLINKSSKE 137

The following BLAST results are available for this feature:

BLAST of Lag0002936 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022152569.1	8.1e-64	100.00	probable histone H2A variant 3 [Momordica charantia] >XP_030526377.1 probable hi...	[more]
XP_022953233.1	1.8e-63	99.25	probable histone H2A variant 3 [Cucurbita moschata] >XP_022959863.1 probable his...	[more]
XP_004135834.1	1.8e-63	99.25	probable histone H2A variant 3 isoform X2 [Cucumis sativus] >XP_008461070.2 PRED...	[more]
XP_010033915.1	3.1e-63	99.25	probable histone H2A variant 3 [Eucalyptus grandis] >XP_030464610.1 probable his...	[more]
XP_031406453.1	2.9e-61	98.51	probable histone H2A variant 3 [Punica granatum] >OWM81812.1 hypothetical protei...	[more]

BLAST of Lag0002936 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9C944	5.6e-60	89.55	Probable histone H2A variant 3 OS=Arabidopsis thaliana OX=3702 GN=At1g52740 PE=1...	[more]
O23628	9.0e-58	84.56	Histone H2A variant 1 OS=Arabidopsis thaliana OX=3702 GN=H2AV PE=1 SV=1	[more]
Q8S857	9.9e-57	84.89	Probable histone H2A variant 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os10g...	[more]
Q8H7Y8	1.3e-56	86.23	Probable histone H2A variant 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g...	[more]
Q84MP7	1.3e-56	86.13	Probable histone H2A variant 3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002119	Histone H2A	PRINTS	PR00620	HISTONEH2A	coord: 70..83 score: 84.63 coord: 55..70 score: 71.55 coord: 111..129 score: 51.98 coord: 25..47 score: 73.0 coord: 84..98 score: 65.78
IPR002119	Histone H2A	SMART	SM00414	h2a4	coord: 14..134 e-value: 4.2E-69 score: 245.6
IPR002119	Histone H2A	CDD	cd00074	H2A	coord: 26..130 e-value: 1.92273E-55 score: 167.127
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 18..103 e-value: 6.3E-20 score: 71.9
IPR032454	Histone H2A, C-terminal domain	PFAM	PF16211	Histone_H2A_C	coord: 104..133 e-value: 8.1E-11 score: 41.5
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 13..134 e-value: 2.0E-56 score: 191.2
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 4..111
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..38
None	No IPR available	PANTHER	PTHR23430:SF300	HISTONE H2A	coord: 2..132
None	No IPR available	PANTHER	PTHR23430	HISTONE H2A	coord: 2..132
IPR032458	Histone H2A conserved site	PROSITE	PS00046	HISTONE_H2A	coord: 33..39

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0002936.1	Lag0002936.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0031507	heterochromatin assembly
biological_process	GO:0044030	regulation of DNA methylation
biological_process	GO:0009266	response to temperature stimulus
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity