Lag0002891 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0002891
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	VQ motif-containing protein 11-like
Location	chr4: 46501351 .. 46501776 (+)
RNA-Seq Expression	Lag0002891
Synteny	Lag0002891

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCACCAACGCCGCCGTCCATTCCTCCACCACGACCTTCGTCGAAGCCGACCCATCAACGTTCCGAGCAATAGTTCAGAGGCTGACCGGAGCGCCCAACGGCCCGCCGGCGTACCCCAAAACGGCGGCGTCTCGGCTCCAGGAACGGCGGCGGAGTAGCAAGAAGCTGGAGCTGGAGCTGAACGGCGGCGACACGGCGATCGGAATCGGAATCGGAATGGCGTCGCCGGTGTCGACGTTGGATTTTGTGGCACGTGCGAGTCCGTGTGAAGAGGAAGAGAAGGCGATTGCGGGAAAAGGGTTTTATTTGCACCCGAGTCCGATTAGCACTCCGAGAGGATCCGACCCGCCTCAGCTTTTGCCTTTGTTTCCCCTTTCTTCTCCTAGGGATTTTAATCACAGAAATCATTCTGTTTCTTCTTAA

mRNA sequence

ATGGCCACCAACGCCGCCGTCCATTCCTCCACCACGACCTTCGTCGAAGCCGACCCATCAACGTTCCGAGCAATAGTTCAGAGGCTGACCGGAGCGCCCAACGGCCCGCCGGCGTACCCCAAAACGGCGGCGTCTCGGCTCCAGGAACGGCGGCGGAGTAGCAAGAAGCTGGAGCTGGAGCTGAACGGCGGCGACACGGCGATCGGAATCGGAATCGGAATGGCGTCGCCGGTGTCGACGTTGGATTTTGTGGCACGTGCGAGTCCGTGTGAAGAGGAAGAGAAGGCGATTGCGGGAAAAGGGTTTTATTTGCACCCGAGTCCGATTAGCACTCCGAGAGGATCCGACCCGCCTCAGCTTTTGCCTTTGTTTCCCCTTTCTTCTCCTAGGGATTTTAATCACAGAAATCATTCTGTTTCTTCTTAA

Coding sequence (CDS)

ATGGCCACCAACGCCGCCGTCCATTCCTCCACCACGACCTTCGTCGAAGCCGACCCATCAACGTTCCGAGCAATAGTTCAGAGGCTGACCGGAGCGCCCAACGGCCCGCCGGCGTACCCCAAAACGGCGGCGTCTCGGCTCCAGGAACGGCGGCGGAGTAGCAAGAAGCTGGAGCTGGAGCTGAACGGCGGCGACACGGCGATCGGAATCGGAATCGGAATGGCGTCGCCGGTGTCGACGTTGGATTTTGTGGCACGTGCGAGTCCGTGTGAAGAGGAAGAGAAGGCGATTGCGGGAAAAGGGTTTTATTTGCACCCGAGTCCGATTAGCACTCCGAGAGGATCCGACCCGCCTCAGCTTTTGCCTTTGTTTCCCCTTTCTTCTCCTAGGGATTTTAATCACAGAAATCATTCTGTTTCTTCTTAA

Protein sequence

MATNAAVHSSTTTFVEADPSTFRAIVQRLTGAPNGPPAYPKTAASRLQERRRSSKKLELELNGGDTAIGIGIGMASPVSTLDFVARASPCEEEEKAIAGKGFYLHPSPISTPRGSDPPQLLPLFPLSSPRDFNHRNHSVSS

Homology

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BLAST of Lag0002891 vs. NCBI nr
Match: XP_022960160.1 (VQ motif-containing protein 11-like [Cucurbita moschata])

HSP 1 Score: 216.9 bits (551), Expect = 1.2e-52
Identity = 116/142 (81.69%), Postives = 122/142 (85.92%), Query Frame = 0


Query: 2   ATNAAVHSSTTTFVEADPSTFRAIVQRLTGAPNGPPAYPKTAASRLQERRRSSKKLELEL 61
           AT A VHSSTTTFVEADPS+FRAIVQ+LTGAPN P     +A+ RLQERRRSSKKLELEL
Sbjct: 5   ATAATVHSSTTTFVEADPSSFRAIVQKLTGAPNAP-----SASFRLQERRRSSKKLELEL 64

Query: 62  NGGD--TAIGIGIGMASPVSTLDFVARASPCEEEEKAIAGKGFYLHPSPISTPRGSDPPQ 121
           NGGD  T IGIGI M SPVSTLDFVAR +PCEEEEKAIAGKGFYLHPSPIS P GS PP+
Sbjct: 65  NGGDGLTGIGIGIEMVSPVSTLDFVARGNPCEEEEKAIAGKGFYLHPSPISPPGGSQPPR 124

Query: 122 LLPLFPLSSPRDFNHRNHSVSS 142
           LLPLFPLSSPRD N RNHSVSS
Sbjct: 125 LLPLFPLSSPRDCNFRNHSVSS 141

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BLAST of Lag0002891 vs. NCBI nr
Match: XP_023004337.1 (VQ motif-containing protein 11-like [Cucurbita maxima])

HSP 1 Score: 215.7 bits (548), Expect = 2.6e-52
Identity = 115/143 (80.42%), Postives = 123/143 (86.01%), Query Frame = 0


Query: 1   MATNAAVHSSTTTFVEADPSTFRAIVQRLTGAPNGPPAYPKTAASRLQERRRSSKKLELE 60
           +AT A VHSSTTTFVEADPS+FRAIVQ+LTGAP+ P     +A+ RLQERRRSSKKLELE
Sbjct: 8   IATAATVHSSTTTFVEADPSSFRAIVQKLTGAPDAP-----SASYRLQERRRSSKKLELE 67

Query: 61  LNGGD--TAIGIGIGMASPVSTLDFVARASPCEEEEKAIAGKGFYLHPSPISTPRGSDPP 120
           LNGGD  T IGIGI M SPVSTLDFVAR +PCEEEEKAIAGKGFYLHPSPIS P GS PP
Sbjct: 68  LNGGDGLTGIGIGIEMVSPVSTLDFVARGNPCEEEEKAIAGKGFYLHPSPISPPGGSQPP 127

Query: 121 QLLPLFPLSSPRDFNHRNHSVSS 142
           +LLPLFPLSSPRD N RNHSVSS
Sbjct: 128 RLLPLFPLSSPRDCNFRNHSVSS 145

[Close]

BLAST of Lag0002891 vs. NCBI nr
Match: KAG6593385.1 (VQ motif-containing protein 11, partial [Cucurbita argyrosperma subsp. sororia] >KAG7025733.1 VQ motif-containing protein 11, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 213.4 bits (542), Expect = 1.3e-51
Identity = 114/142 (80.28%), Postives = 120/142 (84.51%), Query Frame = 0


Query: 2   ATNAAVHSSTTTFVEADPSTFRAIVQRLTGAPNGPPAYPKTAASRLQERRRSSKKLELEL 61
           A    VHSSTTTFVEADPS+FRAIVQ+LTGAPN P     +A+ RLQERRRSSKKLELEL
Sbjct: 3   AAATTVHSSTTTFVEADPSSFRAIVQKLTGAPNAP-----SASFRLQERRRSSKKLELEL 62

Query: 62  NGGD--TAIGIGIGMASPVSTLDFVARASPCEEEEKAIAGKGFYLHPSPISTPRGSDPPQ 121
           NGGD  T IGIGI M SPVSTLDFVAR +PCEEEEKAIAGKGFYLHPSPIS P GS PP+
Sbjct: 63  NGGDGLTGIGIGIEMVSPVSTLDFVARGNPCEEEEKAIAGKGFYLHPSPISPPGGSQPPR 122

Query: 122 LLPLFPLSSPRDFNHRNHSVSS 142
           LLPLFPLSSPRD N RNHSVSS
Sbjct: 123 LLPLFPLSSPRDCNFRNHSVSS 139

[Close]

BLAST of Lag0002891 vs. NCBI nr
Match: XP_023514799.1 (VQ motif-containing protein 11-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 211.5 bits (537), Expect = 4.8e-51
Identity = 113/142 (79.58%), Postives = 119/142 (83.80%), Query Frame = 0


Query: 2   ATNAAVHSSTTTFVEADPSTFRAIVQRLTGAPNGPPAYPKTAASRLQERRRSSKKLELEL 61
           A    VHSSTTTFVEADPS+FRAIVQ+LTGAPN P     + + RLQERRRSSKKLELEL
Sbjct: 4   AAATTVHSSTTTFVEADPSSFRAIVQKLTGAPNAP-----SPSFRLQERRRSSKKLELEL 63

Query: 62  NGGD--TAIGIGIGMASPVSTLDFVARASPCEEEEKAIAGKGFYLHPSPISTPRGSDPPQ 121
           NGGD  T IGIGI M SPVSTLDFVAR +PCEEEEKAIAGKGFYLHPSPIS P GS PP+
Sbjct: 64  NGGDGLTGIGIGIEMVSPVSTLDFVARGNPCEEEEKAIAGKGFYLHPSPISPPGGSQPPR 123

Query: 122 LLPLFPLSSPRDFNHRNHSVSS 142
           LLPLFPLSSPRD N RNHSVSS
Sbjct: 124 LLPLFPLSSPRDCNFRNHSVSS 140

[Close]

BLAST of Lag0002891 vs. NCBI nr
Match: XP_038897860.1 (VQ motif-containing protein 11-like [Benincasa hispida])

HSP 1 Score: 207.6 bits (527), Expect = 7.0e-50
Identity = 110/137 (80.29%), Postives = 117/137 (85.40%), Query Frame = 0


Query: 5   AAVHSSTTTFVEADPSTFRAIVQRLTGAPNGPPAYPKTAASRLQERRRSSKKLELELNGG 64
           A VHS+TTTFVEADPSTFRAIVQ+LTGAPN PP     AA RLQERRRSSKKLELELN G
Sbjct: 8   AVVHSATTTFVEADPSTFRAIVQKLTGAPNRPP-----AAFRLQERRRSSKKLELELNSG 67

Query: 65  DTAIGIGIGMASPVSTLDFVARASPCEEEEKAIAGKGFYLHPSPISTPRGSDPPQLLPLF 124
            TA G GIGM SPVSTL+F+ R SPCEEEE+AIA KGFYLHPSPISTP GSDPP LLPLF
Sbjct: 68  YTAAG-GIGMVSPVSTLEFIGRGSPCEEEERAIAEKGFYLHPSPISTPGGSDPPHLLPLF 127

Query: 125 PLSSPRDFNHRNHSVSS 142
           PLSSP + N+RNHSVSS
Sbjct: 128 PLSSPSNCNNRNHSVSS 138

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BLAST of Lag0002891 vs. ExPASy Swiss-Prot
Match: Q9M8L3 (VQ motif-containing protein 11 OS=Arabidopsis thaliana OX=3702 GN=VQ11 PE=1 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 1.2e-20
Identity = 76/159 (47.80%), Postives = 88/159 (55.35%), Query Frame = 0


Query: 12  TTFVEADPSTFRAIVQRLTGAP---------------NGPPAYPKTAASRLQERRRSSKK 71
           T FV+ADPS FR IVQ+LTGAP                  P  PK  A +L ERR+SSKK
Sbjct: 15  TMFVQADPSNFRNIVQKLTGAPPDISSSSFSAVSAAHQKLPLTPKKPAFKLHERRQSSKK 74

Query: 72  LELELNG----GDTAIGIGIG-MASPVSTLD-FVAR-----------ASPCEEEEKAIAG 131
           +EL++N      D       G + SPVS LD F AR           A P +EE+KAIA 
Sbjct: 75  MELKVNNITNPNDAFSHFHRGFLVSPVSHLDPFWARVSPHSAREEHHAQPDKEEQKAIAE 134

Query: 132 KGFYLHPSPISTPRGSDP-PQLLPLFPLSSPRDFNHRNH 138
           KGFY  PSP S   GS+P P+LLPLFPL SP   NHR H
Sbjct: 135 KGFYFLPSPRS---GSEPAPELLPLFPLRSPNGTNHRIH 170

[Close]

BLAST of Lag0002891 vs. ExPASy Swiss-Prot
Match: Q9LDZ1 (VQ motif-containing protein 19 OS=Arabidopsis thaliana OX=3702 GN=VQ19 PE=1 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.1e-12
Identity = 66/179 (36.87%), Postives = 83/179 (46.37%), Query Frame = 0


Query: 12  TTFVEADPSTFRAIVQRLTG--APNGP--PAYPKTAASR----------LQERRRSSKKL 71
           TTFV+AD S+F+ +VQ LTG  +P  P  P  P T + +           Q ++ S  KL
Sbjct: 37  TTFVQADSSSFKQVVQMLTGSSSPRSPDSPRPPTTPSGKGNFVIPPIKTAQPKKHSGNKL 96

Query: 72  -ELELNGG-----------DTAIGIGIGMASP-----------VSTLDFVARA------- 131
            E   +GG           +T +  G G  SP            S LDF   A       
Sbjct: 97  YERRSHGGFNNNLKNSLMINTLMIGGGGAGSPRFSPRNQEILSPSCLDFPKLALNSPVTP 156

[Close]

BLAST of Lag0002891 vs. ExPASy Swiss-Prot
Match: Q9FNP0 (VQ motif-containing protein 31 OS=Arabidopsis thaliana OX=3702 GN=VQ31 PE=1 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.5e-10
Identity = 58/152 (38.16%), Postives = 74/152 (48.68%), Query Frame = 0


Query: 12  TTFVEADPSTFRAIVQRLTGAP--NGPPAYP----------KTAASRLQERRRSSK-KLE 71
           TTFV+ D +TFR IVQRLTG    N   A P          K   S+L ERR+  + KLE
Sbjct: 17  TTFVQTDTNTFREIVQRLTGPTENNAAAATPEATVIKTAIQKRPTSKLHERRQCMRPKLE 76

Query: 72  L---------------ELNGGDTAIGIGIGMASPV-STLDFV-----ARASPCEEEEKAI 130
           +                 +G    +   +G  S + S L  +     +  +  EEEEKAI
Sbjct: 77  IVKPPLSFKPTGTTPSSKSGNTNLLTSPVGTPSSLFSNLSLIEGEPDSCTTNIEEEEKAI 136

[Close]

BLAST of Lag0002891 vs. ExPASy Swiss-Prot
Match: Q9FHZ3 (VQ motif-containing protein 33 OS=Arabidopsis thaliana OX=3702 GN=VQ33 PE=1 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.3e-09
Identity = 37/67 (55.22%), Postives = 46/67 (68.66%), Query Frame = 0


Query: 72  IGMASPVSTL----DFVARASP-----CEEEEKAIAGKGFYLHPSPISTPRGSDPPQLLP 130
           +G+ SPV+ L    D   ++SP       EE+KAIA KGFYLHPSP+STPR S  P LLP
Sbjct: 174 LGLNSPVTPLRSNDDPFNKSSPLSLGNSSEEDKAIADKGFYLHPSPVSTPRDSQ-PLLLP 233

[Close]

BLAST of Lag0002891 vs. ExPASy Swiss-Prot
Match: Q5M750 (VQ motif-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=VQ4 PE=1 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 8.1e-09
Identity = 57/182 (31.32%), Postives = 75/182 (41.21%), Query Frame = 0


Query: 12  TTFVEADPSTFRAIVQRLTGA------------------------------------PNG 71
           TTFV+AD S+F+ +VQ LTG+                                    PN 
Sbjct: 57  TTFVQADTSSFKQVVQMLTGSAERPKHGSSLKPNPTHHQPDPRSTPSSFSIPPIKAVPNK 116

Query: 72  PPAYPKTAASRLQERRRSSKKLELE-LNGGDTAIGIGIGMASP----VSTLDF------- 131
             +    +  RL ERR S K L++  LN     +        P     S LDF       
Sbjct: 117 KQSSSSASGFRLYERRNSMKNLKINPLNPVFNPVNSAFSPRKPEILSPSILDFPSLVLSP 176

The following BLAST results are available for this feature:

BLAST of Lag0002891 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022960160.1	1.2e-52	81.69	VQ motif-containing protein 11-like [Cucurbita moschata]	[more]
XP_023004337.1	2.6e-52	80.42	VQ motif-containing protein 11-like [Cucurbita maxima]	[more]
KAG6593385.1	1.3e-51	80.28	VQ motif-containing protein 11, partial [Cucurbita argyrosperma subsp. sororia] ...	[more]
XP_023514799.1	4.8e-51	79.58	VQ motif-containing protein 11-like [Cucurbita pepo subsp. pepo]	[more]
XP_038897860.1	7.0e-50	80.29	VQ motif-containing protein 11-like [Benincasa hispida]	[more]

BLAST of Lag0002891 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M8L3	1.2e-20	47.80	VQ motif-containing protein 11 OS=Arabidopsis thaliana OX=3702 GN=VQ11 PE=1 SV=1	[more]
Q9LDZ1	2.1e-12	36.87	VQ motif-containing protein 19 OS=Arabidopsis thaliana OX=3702 GN=VQ19 PE=1 SV=1	[more]
Q9FNP0	2.5e-10	38.16	VQ motif-containing protein 31 OS=Arabidopsis thaliana OX=3702 GN=VQ31 PE=1 SV=1	[more]
Q9FHZ3	1.3e-09	55.22	VQ motif-containing protein 33 OS=Arabidopsis thaliana OX=3702 GN=VQ33 PE=1 SV=1	[more]
Q5M750	8.1e-09	31.32	VQ motif-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=VQ4 PE=1 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008889	VQ	PFAM	PF05678	VQ	coord: 10..33 e-value: 1.3E-11 score: 43.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 107..141
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 29..54
None	No IPR available	PANTHER	PTHR33402:SF19	VQ MOTIF-CONTAINING PROTEIN 11	coord: 1..133
IPR039611	VQ motif-containing protein 4/11/13/19/31/33	PANTHER	PTHR33402	VQ MOTIF-CONTAINING PROTEIN 11-LIKE	coord: 1..133

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0002891.1	Lag0002891.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus