Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCCGACCTCAGCAACGCTATCGCGGTGTTCGCCAACGTCATTGGGGCTCTTGGGTCTCCGAAATTCGCCACCCTCTATTGTAATTCTCCTCCTCTATTTCTCTCTTTCATATTCTTCACCACGGGTAGAGCTAGAAATTTTCATAGAAAGAGATCGAAAATTTATAGTCTAATTTTTATATATTAAAAATAAAAAAATTTAAAATCTTTAATATAATTCTGTCAATTGCTCTCTCCTTCCTTCTTCGCTCTACTCAAGAACTTTCTGAACTTTCAGGAAGACAAGAATATGGTTAGGGACGTTCGAGACGGCGGAGGACGCAGCCCGAGCCTACGACGAGGCGGCACGGCTGATGTGCGGACCGAAAGCGCGAACCAACTTCCAATTCAATCCCAACGATCAACAGTCATCTTCTTCTTCCTCTTCCTCCAAGCTTCTCTCCGCCGCGCTGATTGCGAAATTACACAAATGCCATTTGGCCTCACTCCAAATTGCCAAAAAACACGTCCAGAAACAACACCTAGGATTCGACCCCAACTACGCCGCATACGGCGGCCCTCCGCCGAGCATTGCCGGAACCTCCACCGGCGGGTGGCTGCCGGAAGAAACATGGGTCTACTCCGACGAAGCCCAAATGGAGAGCAATAATATCAATAACAACAACAATATTCATCATCAGCAATGCCTTCAGCCTCTTGAAGATGATCATATCGAACAAATGATACAAGAGCTGCTACACCTCGGATCTTTCGAAATTGTTACATAA
mRNA sequence
ATGGCCCGACCTCAGCAACGCTATCGCGGTGTTCGCCAACGTCATTGGGGCTCTTGGGTCTCCGAAATTCGCCACCCTCTATTGAAGACAAGAATATGGTTAGGGACGTTCGAGACGGCGGAGGACGCAGCCCGAGCCTACGACGAGGCGGCACGGCTGATGTGCGGACCGAAAGCGCGAACCAACTTCCAATTCAATCCCAACGATCAACAGTCATCTTCTTCTTCCTCTTCCTCCAAGCTTCTCTCCGCCGCGCTGATTGCGAAATTACACAAATGCCATTTGGCCTCACTCCAAATTGCCAAAAAACACGTCCAGAAACAACACCTAGGATTCGACCCCAACTACGCCGCATACGGCGGCCCTCCGCCGAGCATTGCCGGAACCTCCACCGGCGGGTGGCTGCCGGAAGAAACATGGGTCTACTCCGACGAAGCCCAAATGGAGAGCAATAATATCAATAACAACAACAATATTCATCATCAGCAATGCCTTCAGCCTCTTGAAGATGATCATATCGAACAAATGATACAAGAGCTGCTACACCTCGGATCTTTCGAAATTGTTACATAA
Coding sequence (CDS)
ATGGCCCGACCTCAGCAACGCTATCGCGGTGTTCGCCAACGTCATTGGGGCTCTTGGGTCTCCGAAATTCGCCACCCTCTATTGAAGACAAGAATATGGTTAGGGACGTTCGAGACGGCGGAGGACGCAGCCCGAGCCTACGACGAGGCGGCACGGCTGATGTGCGGACCGAAAGCGCGAACCAACTTCCAATTCAATCCCAACGATCAACAGTCATCTTCTTCTTCCTCTTCCTCCAAGCTTCTCTCCGCCGCGCTGATTGCGAAATTACACAAATGCCATTTGGCCTCACTCCAAATTGCCAAAAAACACGTCCAGAAACAACACCTAGGATTCGACCCCAACTACGCCGCATACGGCGGCCCTCCGCCGAGCATTGCCGGAACCTCCACCGGCGGGTGGCTGCCGGAAGAAACATGGGTCTACTCCGACGAAGCCCAAATGGAGAGCAATAATATCAATAACAACAACAATATTCATCATCAGCAATGCCTTCAGCCTCTTGAAGATGATCATATCGAACAAATGATACAAGAGCTGCTACACCTCGGATCTTTCGAAATTGTTACATAA
Protein sequence
MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKARTNFQFNPNDQQSSSSSSSSKLLSAALIAKLHKCHLASLQIAKKHVQKQHLGFDPNYAAYGGPPPSIAGTSTGGWLPEETWVYSDEAQMESNNINNNNNIHHQQCLQPLEDDHIEQMIQELLHLGSFEIVT
Homology
BLAST of Lag0002872 vs. NCBI nr
Match:
XP_038899890.1 (ethylene-responsive transcription factor ERF003-like [Benincasa hispida])
HSP 1 Score: 319.7 bits (818), Expect = 1.7e-83
Identity = 164/192 (85.42%), Postives = 170/192 (88.54%), Query Frame = 0
Query: 1 MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKAR 60
MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGP AR
Sbjct: 1 MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPNAR 60
Query: 61 TNFQFNPNDQQSSSSSSSSKLLSAALIAKLHKCHLASLQIAKKHVQKQH-LGFDPNYAAY 120
TNFQ+NPNDQ SSSSSS+ LLSAALIAKLHKCHLASLQIAKKH+ KQH GF P
Sbjct: 61 TNFQYNPNDQHSSSSSSN--LLSAALIAKLHKCHLASLQIAKKHIHKQHPAGFQP----- 120
Query: 121 GGPPPSIAGTSTG-GWLPEETWVYSDEAQMESNNINNNNNIHHQQCLQPLEDDHIEQMIQ 180
PPPSIAG +TG W PEETWVYSDE QME N+ NNNNNIHHQQCLQPLEDDHIEQMIQ
Sbjct: 121 --PPPSIAGPTTGRRWTPEETWVYSDEGQMEMNDNNNNNNIHHQQCLQPLEDDHIEQMIQ 180
Query: 181 ELLHLGSFEIVT 191
ELLHLGSFEI+T
Sbjct: 181 ELLHLGSFEIIT 183
BLAST of Lag0002872 vs. NCBI nr
Match:
XP_008461170.1 (PREDICTED: ethylene-responsive transcription factor ERF003-like [Cucumis melo])
HSP 1 Score: 317.0 bits (811), Expect = 1.1e-82
Identity = 164/202 (81.19%), Postives = 175/202 (86.63%), Query Frame = 0
Query: 1 MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKAR 60
MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKAR
Sbjct: 1 MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKAR 60
Query: 61 TNFQFNPNDQQSS---SSSSSSKLLSAALIAKLHKCHLASLQIAKKHVQKQHLGFDPNYA 120
TNF +N NDQQSS SSSSSSKLLSAALI KLHKCHLASLQIAK+HV KQH GF+P+Y
Sbjct: 61 TNFPYNLNDQQSSSSFSSSSSSKLLSAALIEKLHKCHLASLQIAKQHVHKQHPGFEPSYL 120
Query: 121 AYGG-PPPSIAGTSTGGWLPEETWVYSDEAQME-------SNNINNNNNIHHQQC-LQPL 180
AYGG PPPSI G +T W +ETWVYSD+ Q+E +NN NNNNNIHHQQC L+PL
Sbjct: 121 AYGGSPPPSITGATTSRWTSDETWVYSDKGQLEMNNNNNNNNNNNNNNNIHHQQCQLEPL 180
Query: 181 EDDHIEQMIQELLHLGSFEIVT 191
EDDHIEQMIQELL LGSFEI+T
Sbjct: 181 EDDHIEQMIQELLDLGSFEIIT 202
BLAST of Lag0002872 vs. NCBI nr
Match:
XP_011659507.1 (ethylene-responsive transcription factor ERF003 [Cucumis sativus] >KGN45227.1 hypothetical protein Csa_015978 [Cucumis sativus])
HSP 1 Score: 314.3 bits (804), Expect = 7.1e-82
Identity = 161/196 (82.14%), Postives = 172/196 (87.76%), Query Frame = 0
Query: 1 MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKAR 60
MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKAR
Sbjct: 1 MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKAR 60
Query: 61 TNFQFNPNDQQSSSS-SSSSKLLSAALIAKLHKCHLASLQIAKKHVQKQHLGFDPNYAAY 120
TNF +NPNDQQSSSS SSSSKLLSAALI KLHKCHLASLQIAK+HV KQH GF+P+Y AY
Sbjct: 61 TNFPYNPNDQQSSSSFSSSSKLLSAALIEKLHKCHLASLQIAKQHVHKQHAGFEPSYLAY 120
Query: 121 -GGPPPSIAGTSTGGWLPEETWVYS---DEAQMESNNINNNNNIHHQQC-LQPLEDDHIE 180
G PPP I G +T W +ETWVYS D+ +M +NN N NNNIHHQQC L+PLEDDHIE
Sbjct: 121 SGSPPPIITGATTSQWASDETWVYSNKGDQMEMNNNNNNYNNNIHHQQCQLEPLEDDHIE 180
Query: 181 QMIQELLHLGSFEIVT 191
QMIQELL LGSFEI+T
Sbjct: 181 QMIQELLDLGSFEIIT 196
BLAST of Lag0002872 vs. NCBI nr
Match:
XP_023513557.1 (ethylene-responsive transcription factor ERF003-like [Cucurbita pepo subsp. pepo])
HSP 1 Score: 314.3 bits (804), Expect = 7.1e-82
Identity = 162/190 (85.26%), Postives = 168/190 (88.42%), Query Frame = 0
Query: 1 MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKAR 60
MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKAR
Sbjct: 1 MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKAR 60
Query: 61 TNFQFNPNDQQSSSSSSSSKLLSAALIAKLHKCHLASLQIAKKHVQKQHLGFDPNYAAYG 120
TNFQ N NDQ S SSSS+ LLS ALIAKLHKCHLASLQIAKKH+ KQH GFDPN G
Sbjct: 61 TNFQLNLNDQPSFSSSSN--LLSPALIAKLHKCHLASLQIAKKHIHKQHPGFDPN----G 120
Query: 121 GPPPSIAGTSTGGWLPEETWVYSDEAQMESNNINNNNNIHHQQCLQPLEDDHIEQMIQEL 180
GPPPSI+ T+TG W PEETWVYSDEAQME N NN+NNIH QQCLQPLEDDHIEQMIQEL
Sbjct: 121 GPPPSISRTTTGPWPPEETWVYSDEAQMEIN--NNDNNIHRQQCLQPLEDDHIEQMIQEL 180
Query: 181 LHLGSFEIVT 191
L LG FEI+T
Sbjct: 181 LDLGPFEIIT 182
BLAST of Lag0002872 vs. NCBI nr
Match:
XP_022959765.1 (ethylene-responsive transcription factor ERF003-like [Cucurbita moschata])
HSP 1 Score: 312.0 bits (798), Expect = 3.5e-81
Identity = 161/190 (84.74%), Postives = 167/190 (87.89%), Query Frame = 0
Query: 1 MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKAR 60
MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKAR
Sbjct: 1 MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKAR 60
Query: 61 TNFQFNPNDQQSSSSSSSSKLLSAALIAKLHKCHLASLQIAKKHVQKQHLGFDPNYAAYG 120
TNFQ N NDQ S SSSS+ LLS ALIAKLHKCHLASLQI KKH+ KQH GFD N G
Sbjct: 61 TNFQLNLNDQPSFSSSSN--LLSPALIAKLHKCHLASLQITKKHIHKQHPGFDLN----G 120
Query: 121 GPPPSIAGTSTGGWLPEETWVYSDEAQMESNNINNNNNIHHQQCLQPLEDDHIEQMIQEL 180
GPPPSI+ T+TG W PEETWVYSDEAQME NN N+NNNIHHQ CLQPLEDDHIEQMIQEL
Sbjct: 121 GPPPSISRTTTGQWPPEETWVYSDEAQMEINN-NDNNNIHHQPCLQPLEDDHIEQMIQEL 180
Query: 181 LHLGSFEIVT 191
L LG FEI+T
Sbjct: 181 LDLGPFEIIT 183
BLAST of Lag0002872 vs. ExPASy Swiss-Prot
Match:
Q94AW5 (Ethylene-responsive transcription factor ERF003 OS=Arabidopsis thaliana OX=3702 GN=ERF003 PE=1 SV=1)
HSP 1 Score: 194.5 bits (493), Expect = 1.1e-48
Identity = 114/189 (60.32%), Postives = 132/189 (69.84%), Query Frame = 0
Query: 1 MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKAR 60
MARPQQR+RGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGP+AR
Sbjct: 1 MARPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60
Query: 61 TNFQFNPNDQQSSSSSSSSKLLSAALIAKLHKCHLASLQIAKK-HVQKQHLGFDPNYAAY 120
TNF +NPN + +SSSKLLSA L AKLHKC++ASLQ+ K+ Q Q A
Sbjct: 61 TNFPYNPN----AIPTSSSKLLSATLTAKLHKCYMASLQMTKQTQTQTQTQTARSQSADS 120
Query: 121 GGPPPSIAGTSTGGWLPEETWVYSDEAQMESNNINNNNNIHHQQCLQPLEDDHIEQMIQE 180
G + + + G + E T E + E N N QQ +PLE+DHIEQMI+E
Sbjct: 121 DGVTANESHLNRG--VTETT-----EIKWEDGNAN------MQQNFRPLEEDHIEQMIEE 172
Query: 181 LLHLGSFEI 189
LLH GS E+
Sbjct: 181 LLHYGSIEL 172
BLAST of Lag0002872 vs. ExPASy Swiss-Prot
Match:
P16146 (Protein PPLZ02 OS=Lupinus polyphyllus OX=3874 GN=PPLZ02 PE=2 SV=1)
HSP 1 Score: 162.9 bits (411), Expect = 3.5e-39
Identity = 98/177 (55.37%), Postives = 117/177 (66.10%), Query Frame = 0
Query: 1 MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKAR 60
MARPQQRYRG RQRHWGSWVSEIRH +LKTRIW GTFE+AEDAARAYDEAARLMCG +AR
Sbjct: 1 MARPQQRYRGFRQRHWGSWVSEIRHSILKTRIWQGTFESAEDAARAYDEAARLMCGTRAR 60
Query: 61 TNFQFNPNDQQSSSSSSSSKLLSAALIAKLHKCHLASLQIAKKHVQKQHLGFDPNYAAYG 120
TNF +NPN +S SSSSKLLSA LIAKLH+C++ASLQ+ + L P A
Sbjct: 61 TNFPYNPN----ASQSSSSKLLSATLIAKLHRCYMASLQMTR----PSSLPEAPRIIA-- 120
Query: 121 GPPPSIAGTSTGGW-LPEETWVYSDEAQMESNNIN-NNNNIHHQQCLQPLEDDHIEQ 176
P ++ G LP++ E Q N++ + Q +PLE+DHI Q
Sbjct: 121 SPNNAVKGIGADAMLLPKKR---EQEEQETGGNLDFKKVKVECSQQFKPLEEDHIAQ 164
BLAST of Lag0002872 vs. ExPASy Swiss-Prot
Match:
Q9XI33 (Ethylene-responsive transcription factor WIN1 OS=Arabidopsis thaliana OX=3702 GN=WIN1 PE=2 SV=1)
HSP 1 Score: 116.3 bits (290), Expect = 3.7e-25
Identity = 66/122 (54.10%), Postives = 79/122 (64.75%), Query Frame = 0
Query: 6 QRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKARTNFQF 65
+++RGVRQRHWGSWV+EIRHPLLK RIWLGTFETAE+AARAYDEAA LM G A+TNF
Sbjct: 5 KKFRGVRQRHWGSWVAEIRHPLLKRRIWLGTFETAEEAARAYDEAAVLMSGRNAKTNFPL 64
Query: 66 NPND-------------QQSSSSSSSSKLLSAALIAKLHKCHLA---SLQIAKKHVQKQH 112
N N+ + SSS+SS LS+ L AKL KC + SL + H
Sbjct: 65 NNNNTGETSEGKTDISASSTMSSSTSSSSLSSILSAKLRKCCKSPSPSLTCLRLDTASSH 124
BLAST of Lag0002872 vs. ExPASy Swiss-Prot
Match:
Q3E958 (Ethylene-responsive transcription factor SHINE 3 OS=Arabidopsis thaliana OX=3702 GN=SHN3 PE=2 SV=1)
HSP 1 Score: 102.1 bits (253), Expect = 7.3e-21
Identity = 55/91 (60.44%), Postives = 65/91 (71.43%), Query Frame = 0
Query: 6 QRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKARTNFQF 65
+++RGVRQR WGSWVSEIRHPLLK R+WLGTF+TAE AARAYD+AA LM G A+TNF
Sbjct: 5 KKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAETAARAYDQAAVLMNGQSAKTNFPV 64
Query: 66 ----NPNDQQSSSSSSSSKLLSAALIAKLHK 93
N + +S+ S K LS L AKL K
Sbjct: 65 IKSNGSNSLEINSALRSPKSLSELLNAKLRK 95
BLAST of Lag0002872 vs. ExPASy Swiss-Prot
Match:
Q9LFN7 (Ethylene-responsive transcription factor SHINE 2 OS=Arabidopsis thaliana OX=3702 GN=SHN2 PE=2 SV=1)
HSP 1 Score: 100.9 bits (250), Expect = 1.6e-20
Identity = 75/186 (40.32%), Postives = 95/186 (51.08%), Query Frame = 0
Query: 6 QRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKARTNFQF 65
+++RGVRQR WGSWVSEIRHPLLK R+WLGTFETAE AARAYD+AA LM G A+TNF
Sbjct: 5 RKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAALLMNGQNAKTNFPV 64
Query: 66 NPNDQQS------SSSSSSSKLLSAALIAKLHK-CH--LASLQIAKKHVQKQHLGFDPNY 125
+++ S +S S K LS L AKL K C SL + H+G
Sbjct: 65 VKSEEGSDHVKDVNSPLMSPKSLSELLNAKLRKSCKDLTPSLTCLRLDTDSSHIGVWQKR 124
Query: 126 AAYGGPPPSIAGTSTGGWLPEETWVYSDEAQMESNNINNNNNIHHQQCLQPLEDDHIEQM 183
A P + G + E D N N ++ + ED +M
Sbjct: 125 AGSKTSPTWVMRLELGNVVNESA---VDLGLTTMNKQNVEKEEEEEEAIISDEDQLAMEM 184
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_038899890.1 | 1.7e-83 | 85.42 | ethylene-responsive transcription factor ERF003-like [Benincasa hispida] | [more] |
XP_008461170.1 | 1.1e-82 | 81.19 | PREDICTED: ethylene-responsive transcription factor ERF003-like [Cucumis melo] | [more] |
XP_011659507.1 | 7.1e-82 | 82.14 | ethylene-responsive transcription factor ERF003 [Cucumis sativus] >KGN45227.1 hy... | [more] |
XP_023513557.1 | 7.1e-82 | 85.26 | ethylene-responsive transcription factor ERF003-like [Cucurbita pepo subsp. pepo... | [more] |
XP_022959765.1 | 3.5e-81 | 84.74 | ethylene-responsive transcription factor ERF003-like [Cucurbita moschata] | [more] |
Match Name | E-value | Identity | Description | |
Q94AW5 | 1.1e-48 | 60.32 | Ethylene-responsive transcription factor ERF003 OS=Arabidopsis thaliana OX=3702 ... | [more] |
P16146 | 3.5e-39 | 55.37 | Protein PPLZ02 OS=Lupinus polyphyllus OX=3874 GN=PPLZ02 PE=2 SV=1 | [more] |
Q9XI33 | 3.7e-25 | 54.10 | Ethylene-responsive transcription factor WIN1 OS=Arabidopsis thaliana OX=3702 GN... | [more] |
Q3E958 | 7.3e-21 | 60.44 | Ethylene-responsive transcription factor SHINE 3 OS=Arabidopsis thaliana OX=3702... | [more] |
Q9LFN7 | 1.6e-20 | 40.32 | Ethylene-responsive transcription factor SHINE 2 OS=Arabidopsis thaliana OX=3702... | [more] |