Lag0002867 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0002867
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	40S ribosomal protein S12
Location	chr4: 46347684 .. 46349142 (-)
RNA-Seq Expression	Lag0002867
Synteny	Lag0002867

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAGCGTGAGTGGAAACTTTCTTATAACAATTTCTAACTTCCCTGTTAATTGCCTTTTTTTTTCGTGTTGTATCTGGGTGCTTCGTGTTCAGTATCTTAGATATAGACGATGCCTTGATTTTTTCTAGACTAGAATCTACTGCTTGTAATGTTAGTCGAGTATGAATAAGAAGAAAGTTTATGAGTGGAAACTCGATTGGTGAAGGCGATGAAGCTGTACATCTTGATGCCTTGTGATGCAAATAATACCTTTTGGTCTTAGGTCTTAAAATATTGATATTTGAAGTTCAGTCCGTGATTTATACGTTGTTCAGTAACATTTCTTTGTGGGTGATTAACGTTCCTTAGGAGTCAAGATCCCTTTATTGACTTGTTTTATAGTGAACTACTACTGAATTTCGGCTTCTTTTGTTAGTGTCTTTATATTTGCTGCAATGACTTTGTAATTGGCTTCAATTGGTTGTTAGCAGTATGCCATAGATGAGTGTTTTAATCTCTTTTAACTTGGTTACTTTTGCAGTGATGAAGGTGCAGTTGTGGCTGAGGCGCCCGCCCCAGCTCTAGGTGAGCCGATGGACATTGAGACTGCTTTGCAGCTTGTTCTTAGAAAATCATTGGCTCACGGTGGTCTTGTTCGAGGCCTTCATGAGAGCGCTAAAGCTATTGAGAAGCACGCTGCTCAGCTTTGTGTCTTGGGAGAAGACTGTAACCAGCCAGATTATGTTAAACTAGTCAAAGCACTTTGTGCTGAGCACAACGTTAACTTGATGACAGTTCCTAGTGCAAAAACCCTTGGCGAGTGGGCTGGTGTAAGTGTTTAATCTTATTTAGACATATTATTTTACATTCTATCCAAATAAAATGGTTTACCTTTTGCTCGATTATACTTCATCTCTGGTACCATTCCATACTACTATATTCATTCTTCCCAGATCGAACTACCTGTCAATTTTTAGGTCCATGTGTTGCGTGTTCTGGATTATACAAGGATATAAACATAATGTATTTATGCAAAATCAAGATAAATATTTTTGTGATTCTCACCTAAAAAGTGACCTGCTAAGAACACTATGAAAAATTCGTTTTTGCTTCAAAGTTCAAACATTTGCATTCTACACCATCTGTTTGATTTTGATATTCAAGGTGCACGGAATATTCTCTGCCAATATTACTAGCAAGGCTTGCCAATGTGAGTTCAGGATAAGTGATTTTCTTCTTGTTTGGTCTAATGCAGCTATGCAAGATTGATTCCGAGGGAAAGGCTAGGAAAGTTGTTGGTTGCTCCTGTGTCGTAGTTAAGGTACATCTGTGTGCTCATCACTTTCAGAGCAAATGTTCTGTTCCTCTTCTTTTAAAACATTGTTGTTTACTTGAATTTTGCATGTGTTATCCCCAGGATTTTGGGGAGGATCACGAGGCACTCCACATTGTCCAGAAGCATGTGAGTTCAAATTGA

mRNA sequence

ATGTCAGCTGATGAAGGTGCAGTTGTGGCTGAGGCGCCCGCCCCAGCTCTAGGTGAGCCGATGGACATTGAGACTGCTTTGCAGCTTGTTCTTAGAAAATCATTGGCTCACGGTGGTCTTGTTCGAGGCCTTCATGAGAGCGCTAAAGCTATTGAGAAGCACGCTGCTCAGCTTTGTGTCTTGGGAGAAGACTGTAACCAGCCAGATTATGTTAAACTAGTCAAAGCACTTTGTGCTGAGCACAACGTTAACTTGATGACAGTTCCTAGTGCAAAAACCCTTGGCGAGTGGGCTGGTCTATGCAAGATTGATTCCGAGGGAAAGGCTAGGAAAGTTGTTGGTTGCTCCTGTGTCGTAGTTAAGGATTTTGGGGAGGATCACGAGGCACTCCACATTGTCCAGAAGCATGTGAGTTCAAATTGA

Coding sequence (CDS)

ATGTCAGCTGATGAAGGTGCAGTTGTGGCTGAGGCGCCCGCCCCAGCTCTAGGTGAGCCGATGGACATTGAGACTGCTTTGCAGCTTGTTCTTAGAAAATCATTGGCTCACGGTGGTCTTGTTCGAGGCCTTCATGAGAGCGCTAAAGCTATTGAGAAGCACGCTGCTCAGCTTTGTGTCTTGGGAGAAGACTGTAACCAGCCAGATTATGTTAAACTAGTCAAAGCACTTTGTGCTGAGCACAACGTTAACTTGATGACAGTTCCTAGTGCAAAAACCCTTGGCGAGTGGGCTGGTCTATGCAAGATTGATTCCGAGGGAAAGGCTAGGAAAGTTGTTGGTTGCTCCTGTGTCGTAGTTAAGGATTTTGGGGAGGATCACGAGGCACTCCACATTGTCCAGAAGCATGTGAGTTCAAATTGA

Protein sequence

MSADEGAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKHVSSN

Homology

[Close]

BLAST of Lag0002867 vs. NCBI nr
Match: XP_004147008.1 (40S ribosomal protein S12 [Cucumis sativus] >XP_008457630.1 PREDICTED: 40S ribosomal protein S12-like [Cucumis melo] >XP_031736838.1 40S ribosomal protein S12 [Cucumis sativus] >KAA0045670.1 40S ribosomal protein S12 [Cucumis melo var. makuwa] >KGN61872.1 hypothetical protein Csa_006022 [Cucumis sativus] >TYJ99613.1 40S ribosomal protein S12 [Cucumis melo var. makuwa])

HSP 1 Score: 282.3 bits (721), Expect = 2.2e-72
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 1   MSADEGAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60
           MSADEGAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV
Sbjct: 1   MSADEGAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60

Query: 61  LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120
           LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV
Sbjct: 61  LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120

Query: 121 KDFGEDHEALHIVQKHVSSN 141
           KDFGEDHEALHIVQKHVSSN
Sbjct: 121 KDFGEDHEALHIVQKHVSSN 140

[Close]

BLAST of Lag0002867 vs. NCBI nr
Match: XP_038901505.1 (40S ribosomal protein S12-like [Benincasa hispida])

HSP 1 Score: 280.8 bits (717), Expect = 6.5e-72
Identity = 139/140 (99.29%), Postives = 139/140 (99.29%), Query Frame = 0


Query: 1   MSADEGAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60
           MSADEGAVV EAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV
Sbjct: 1   MSADEGAVVVEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60

Query: 61  LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120
           LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV
Sbjct: 61  LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120

Query: 121 KDFGEDHEALHIVQKHVSSN 141
           KDFGEDHEALHIVQKHVSSN
Sbjct: 121 KDFGEDHEALHIVQKHVSSN 140

[Close]

BLAST of Lag0002867 vs. NCBI nr
Match: XP_023004118.1 (40S ribosomal protein S12-like [Cucurbita maxima] >XP_023514414.1 40S ribosomal protein S12-like [Cucurbita pepo subsp. pepo] >KAG6593366.1 40S ribosomal protein S12, partial [Cucurbita argyrosperma subsp. sororia] >KAG7025714.1 40S ribosomal protein S12, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 280.4 bits (716), Expect = 8.4e-72
Identity = 138/140 (98.57%), Postives = 139/140 (99.29%), Query Frame = 0


Query: 1   MSADEGAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60
           MSADEGAVV EAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV
Sbjct: 1   MSADEGAVVVEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60

Query: 61  LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120
           LGEDCNQPDY+KLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV
Sbjct: 61  LGEDCNQPDYIKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120

Query: 121 KDFGEDHEALHIVQKHVSSN 141
           KDFGEDHEALHIVQKHVSSN
Sbjct: 121 KDFGEDHEALHIVQKHVSSN 140

[Close]

BLAST of Lag0002867 vs. NCBI nr
Match: XP_023512603.1 (40S ribosomal protein S12-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 278.9 bits (712), Expect = 2.5e-71
Identity = 138/140 (98.57%), Postives = 139/140 (99.29%), Query Frame = 0


Query: 1   MSADEGAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60
           MSADEGAVV EAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV
Sbjct: 1   MSADEGAVVVEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60

Query: 61  LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120
           LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV
Sbjct: 61  LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120

Query: 121 KDFGEDHEALHIVQKHVSSN 141
           KDFGEDHEALHIVQKHVSS+
Sbjct: 121 KDFGEDHEALHIVQKHVSSS 140

[Close]

BLAST of Lag0002867 vs. NCBI nr
Match: XP_022960502.1 (40S ribosomal protein S12-like [Cucurbita moschata])

HSP 1 Score: 278.9 bits (712), Expect = 2.5e-71
Identity = 137/140 (97.86%), Postives = 138/140 (98.57%), Query Frame = 0


Query: 1   MSADEGAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60
           MSADEGAVV EAP PALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV
Sbjct: 1   MSADEGAVVVEAPTPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60

Query: 61  LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120
           LGEDCNQPDY+KLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV
Sbjct: 61  LGEDCNQPDYIKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120

Query: 121 KDFGEDHEALHIVQKHVSSN 141
           KDFGEDHEALHIVQKHVSSN
Sbjct: 121 KDFGEDHEALHIVQKHVSSN 140

[Close]

BLAST of Lag0002867 vs. ExPASy Swiss-Prot
Match: Q9XHS0 (40S ribosomal protein S12 OS=Hordeum vulgare OX=4513 GN=RPS12 PE=2 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 5.2e-56
Identity = 103/129 (79.84%), Postives = 119/129 (92.25%), Query Frame = 0


Query: 11  EAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDY 70
           EAP P LGEPMD+ TALQLV++KS AH GLV+GL E+AK+IEKHAAQLCVL EDC+QPDY
Sbjct: 14  EAPTPILGEPMDLMTALQLVMKKSSAHDGLVKGLREAAKSIEKHAAQLCVLAEDCDQPDY 73

Query: 71  VKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEAL 130
           VKLVKALCAEHNV+L+TVPSAKTLGEWAGLCKID+EGKARKVVGCSC+VVKD+GE+ E L
Sbjct: 74  VKLVKALCAEHNVHLVTVPSAKTLGEWAGLCKIDTEGKARKVVGCSCIVVKDYGEESEGL 133

Query: 131 HIVQKHVSS 140
           +IVQ++V S
Sbjct: 134 NIVQQYVKS 142

[Close]

BLAST of Lag0002867 vs. ExPASy Swiss-Prot
Match: Q9SKZ3 (40S ribosomal protein S12-2 OS=Arabidopsis thaliana OX=3702 GN=RPS12C PE=1 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 1.3e-51
Identity = 100/144 (69.44%), Postives = 116/144 (80.56%), Query Frame = 0


Query: 1   MSADEGAVVAEAP----APALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAA 60
           MS DE       P    A  + E MD+ TAL+L +RKS A+GG+VRGLHESAK IEK  A
Sbjct: 1   MSGDEAVAAPVVPPVAEAAVIPEDMDVSTALELTVRKSRAYGGVVRGLHESAKLIEKRNA 60

Query: 61  QLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCS 120
           QLCVL EDCNQPDYVKLVKALCA+H++ L+TVPSAKTLGEWAGLCKIDSEG ARKVVGCS
Sbjct: 61  QLCVLAEDCNQPDYVKLVKALCADHSIKLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCS 120

Query: 121 CVVVKDFGEDHEALHIVQKHVSSN 141
           C+V+KDFGE+  AL+IV+KH+ SN
Sbjct: 121 CLVIKDFGEETTALNIVKKHLDSN 144

[Close]

BLAST of Lag0002867 vs. ExPASy Swiss-Prot
Match: Q9S9P1 (40S ribosomal protein S12-1 OS=Arabidopsis thaliana OX=3702 GN=RPS12A PE=2 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 7.2e-50
Identity = 101/143 (70.63%), Postives = 113/143 (79.02%), Query Frame = 0


Query: 1   MSADEGAVVAEAP----APALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAA 60
           MS DE A V   P      A+ E MD+ TAL+L LRK+ A+GG+VRGLHE AK IEK  A
Sbjct: 1   MSGDEAAPVVVPPPVAEPAAIPEDMDLMTALELTLRKARAYGGVVRGLHECAKLIEKRVA 60

Query: 61  QLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCS 120
           QL VL EDCNQPDYVKLVKALCA+H V L+TVPSAKTLGEWAGLCKIDSEG ARKVVGCS
Sbjct: 61  QLVVLAEDCNQPDYVKLVKALCADHEVRLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCS 120

Query: 121 CVVVKDFGEDHEALHIVQKHVSS 140
           C+VVKDFGE+  AL IV KH++S
Sbjct: 121 CLVVKDFGEETTALSIVNKHIAS 143

[Close]

BLAST of Lag0002867 vs. ExPASy Swiss-Prot
Match: Q76I81 (40S ribosomal protein S12 OS=Bos taurus OX=9913 GN=RPS12 PE=2 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 5.4e-37
Identity = 71/121 (58.68%), Postives = 93/121 (76.86%), Query Frame = 0


Query: 16  ALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVK 75
           A G  MD+ TALQ VL+ +L H GL RG+ E+AKA++K  A LCVL  +C++P YVKLV+
Sbjct: 7   AAGGVMDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVE 66

Query: 76  ALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQK 135
           ALCAEH +NL+ V   K LGEW GLCKID EGK RKVVGCSCVVVKD+G++ +A  ++++
Sbjct: 67  ALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEE 126

Query: 136 H 137
           +
Sbjct: 127 Y 127

[Close]

BLAST of Lag0002867 vs. ExPASy Swiss-Prot
Match: P25398 (40S ribosomal protein S12 OS=Homo sapiens OX=9606 GN=RPS12 PE=1 SV=3)

HSP 1 Score: 155.2 bits (391), Expect = 5.4e-37
Identity = 71/121 (58.68%), Postives = 93/121 (76.86%), Query Frame = 0


Query: 16  ALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVK 75
           A G  MD+ TALQ VL+ +L H GL RG+ E+AKA++K  A LCVL  +C++P YVKLV+
Sbjct: 7   AAGGVMDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVE 66

Query: 76  ALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQK 135
           ALCAEH +NL+ V   K LGEW GLCKID EGK RKVVGCSCVVVKD+G++ +A  ++++
Sbjct: 67  ALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEE 126

Query: 136 H 137
           +
Sbjct: 127 Y 127

The following BLAST results are available for this feature:

BLAST of Lag0002867 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004147008.1	2.2e-72	100.00	40S ribosomal protein S12 [Cucumis sativus] >XP_008457630.1 PREDICTED: 40S ribos...	[more]
XP_038901505.1	6.5e-72	99.29	40S ribosomal protein S12-like [Benincasa hispida]	[more]
XP_023004118.1	8.4e-72	98.57	40S ribosomal protein S12-like [Cucurbita maxima] >XP_023514414.1 40S ribosomal ...	[more]
XP_023512603.1	2.5e-71	98.57	40S ribosomal protein S12-like [Cucurbita pepo subsp. pepo]	[more]
XP_022960502.1	2.5e-71	97.86	40S ribosomal protein S12-like [Cucurbita moschata]	[more]

BLAST of Lag0002867 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9XHS0	5.2e-56	79.84	40S ribosomal protein S12 OS=Hordeum vulgare OX=4513 GN=RPS12 PE=2 SV=1	[more]
Q9SKZ3	1.3e-51	69.44	40S ribosomal protein S12-2 OS=Arabidopsis thaliana OX=3702 GN=RPS12C PE=1 SV=1	[more]
Q9S9P1	7.2e-50	70.63	40S ribosomal protein S12-1 OS=Arabidopsis thaliana OX=3702 GN=RPS12A PE=2 SV=1	[more]
Q76I81	5.4e-37	58.68	40S ribosomal protein S12 OS=Bos taurus OX=9913 GN=RPS12 PE=2 SV=1	[more]
P25398	5.4e-37	58.68	40S ribosomal protein S12 OS=Homo sapiens OX=9606 GN=RPS12 PE=1 SV=3	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000530	Ribosomal protein S12e	PRINTS	PR00972	RIBSOMALS12E	coord: 85..106 score: 57.85 coord: 110..123 score: 81.17 coord: 30..43 score: 54.55 coord: 44..60 score: 48.13
IPR000530	Ribosomal protein S12e	PANTHER	PTHR11843	40S RIBOSOMAL PROTEIN S12	coord: 7..139
IPR000530	Ribosomal protein S12e	PROSITE	PS01189	RIBOSOMAL_S12E	coord: 26..44
IPR004038	Ribosomal protein L7Ae/L30e/S12e/Gadd45	PFAM	PF01248	Ribosomal_L7Ae	coord: 26..119 e-value: 8.1E-28 score: 96.0
IPR029064	50S ribosomal protein L30e-like	GENE3D	3.30.1330.30		coord: 8..140 e-value: 1.3E-54 score: 185.1
IPR029064	50S ribosomal protein L30e-like	SUPERFAMILY	55315	L30e-like	coord: 19..138
None	No IPR available	PANTHER	PTHR11843:SF20	40S RIBOSOMAL PROTEIN S12	coord: 7..139

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0002867.1	Lag0002867.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome