Lag0002802 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0002802
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	30S ribosomal protein 2, chloroplastic-like
Location	chr4: 45763601 .. 45766139 (+)
RNA-Seq Expression	Lag0002802
Synteny	Lag0002802

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCATCTCATCCATATTATCGCCAACCAATCTCATCCACTGCTCCACAAAATCCATCGAAACCCCACAAAAATTATCCAGTCAATTTCTCCGACCAATCTCATTTCACCGCCGTCATACCCTCCTCCGCCTCTCTCCCGGTCTTCAATCCTCCGCCACAAAACGCCCCGCCAGACTCTTCGCCGTCGCAGAAGCGGCGACCCAGAATCCCAGTTCGGTGGCGACAAGGAAACTGTACATTGGGAATATACCTAGAAATGTGGATAATGAGGAGCTCACTCGGATTGTCGAAGAACATGGGGCCGTGGAGAAGGCTGAGGTGCGTAATTTCTGCTTGGATTTGTTCTTGTTTTGGTTTTCTTATTTTGGGGATTTTGAATTTTGTTTGATACCCTGCGTCGAATTGTTGATGTTGAGTCTTGCTAGATTCATGAGGGCTTATATCTGCTTAGCTTGTCTTGAACCTTCGCATTGACTGAGTTTACTTGCTAATAAGTTCATCAGAAGTTGAGAACTGCTGAATTTAGCCTGATGTTGTGCTAAATTTCTCGACCATTACTTGGAAATGTAGTTTGCAGAATGTTATCCACGAAGGAAGATGGAAAAAGATTTGAAACGTTCTTTACCTCTAGTTTTGGGCAAGGTTTCAATGAGTTAGTTTTTAGTTTTTTGAGGTTGGATATGGTTCTTGTCATCCAAGAATCAGACGATTTTCACCTCTATAGAACTAGAATATGATAAAATGGTCTTCATTAACAGTAACAGCCAAGATAAGCATAAGACTAGGTAGTCCCTGTTTATTGCTTCCACATGGTTTCCATACCGTTCATTCCAATTAGAATATATATATATTAAGGCCATCCTCATAAGTTGCATCCACTGTTGTCGGGAATCGAGTTCATAGGAGGAAACAGACGTATAAAAGGGAAGAAGAATGTAGAGGATGTCATGATGCTGCTAGGAGAAAGGAGAATTGAAACCCGTGAAATGCTCGCCGCAGGCTCGTAGAAATTACATTGGTTATAATCAATTCTTGCTTGTTTTTGGGGTATATCAGCGTTGTTGCATTTGTATGAGAGTATCTAAGATGAGTACCTAGCTTTTCAATCTGCTCATTGCAGCTGCAGCTGATATTTAACTAGAGTCTTCTTGGTGACAAAATCAAAGGGAAACTACTTTTAGTTTTAGCACCAGAAAGATAAATAGTGCCATACACATTTGGTTTACTTTGGTCATGCATCTGACTCATGGAGATGTTATTGATCTTAAGTGCAGTTCTTCCTTGTTAGAAAAGTTACAAGCTAATCTATTAGAAAAAAAGATATCAATGCAATATAGCCATTTTGAAAAACTAGCTAGTTTTCATCTAAAAGTCAGAATTTTGCCTGGCAAGGTACTTGAACCAAACAGTCCCTTAAATTAAGTAGCTAGTGACATTTTTATTTTCGAAGAATTCTTTCCTGCAATCAATTTACTTGAAGAATTAGTTCTCCTTCTTTACTTTCTAACAGTTGGTATCGGCTTTAAAACTTATTTTGTTCTATTTCCAGGTCATGTATGACAAATACTCTGGAAGAAGCCGCAGATTTGCCTTCGTTACCATGAAAACAGTTGACGACGCAAATGCCGCAATTGAGAAACTGAATGAGACAGTAAGTTAATAGTAATACCTACAAAATGCAACAAAAATTGAAAAAGAAAAAGAACAAAACAGTTACTATACACTATACAGATCAGTTGTGCTGACAATATTGGTCTAATGACAGGAAGTTGGAGGACGTACGATTAAAGTGAACATAACTGAAAAACCTTTGGTTAATACAGCAGTTGATCTGTCATTTCTTCAGGCAGAGGAATCCCAGTTCATCGACAGTCCCTACAAAGTATACGTAGGAAATATTTCGAGTACAGTTTCTACTGAAACACTAAAAAATTTCTTCTCTGAGAAGGTTAAAGTTCTCAGTGCAAAGGTTTCACGGGTTCCCGGTACCTCGAAATCAAGTGGCTACGGTTTTGTTACCTTTCCTTCAGAGGAGGAAGTTGAAGCTGCCATTTCATCTTTTAACAATGCTGTAAGTAACTTCTTTCCATTCTCAATCATATCAAATATCGTGATATCGATATCGATTTATGCAGACTCTATCTCACTTTCTGGTCCATATCACCCCTTGGTTTGGGTTTCATGCATTGGCAACCTTTTTGCTCCTGTTTGGTAGACATTGTATAGTAGAGAATTCCTTGTTTCATTTTCTGTTTCCCTAAAACAAGTGCATACAGATTAGCATTCCTGATCACTGACTTGTAAGAAACATTTCTAAAACTAGTTCACCATTTTCCTACTCGAACTGCTTCTGTTAGTTATCGATAACACCAACGGTTCGACGAGCAATGTTCTCAAAGATAATGGCATTTAACTCGAAAAACTTTCATATGCACCTTTTTGTTTCGGCATGGTTTGAAGAAGCTTGTGTCTGATATGTTCTTCTTTGCTGCAGTTGTTGGAAGGCCAACCTATCCGTGTAAACAAGGCATAA

mRNA sequence

ATGGCTTCCATCTCATCCATATTATCGCCAACCAATCTCATCCACTGCTCCACAAAATCCATCGAAACCCCACAAAAATTATCCAGTCAATTTCTCCGACCAATCTCATTTCACCGCCGTCATACCCTCCTCCGCCTCTCTCCCGGTCTTCAATCCTCCGCCACAAAACGCCCCGCCAGACTCTTCGCCGTCGCAGAAGCGGCGACCCAGAATCCCAGTTCGGTGGCGACAAGGAAACTGTACATTGGGAATATACCTAGAAATGTGGATAATGAGGAGCTCACTCGGATTGTCGAAGAACATGGGGCCGTGGAGAAGGCTGAGGTCATGTATGACAAATACTCTGGAAGAAGCCGCAGATTTGCCTTCGTTACCATGAAAACAGTTGACGACGCAAATGCCGCAATTGAGAAACTGAATGAGACAGAAGTTGGAGGACGTACGATTAAAGTGAACATAACTGAAAAACCTTTGGTTAATACAGCAGTTGATCTGTCATTTCTTCAGGCAGAGGAATCCCAGTTCATCGACAGTCCCTACAAAGTATACGTAGGAAATATTTCGAGTACAGTTTCTACTGAAACACTAAAAAATTTCTTCTCTGAGAAGGTTAAAGTTCTCAGTGCAAAGGTTTCACGGGTTCCCGGTACCTCGAAATCAAGTGGCTACGGTTTTGTTACCTTTCCTTCAGAGGAGGAAGTTGAAGCTGCCATTTCATCTTTTAACAATGCTTTGTTGGAAGGCCAACCTATCCGTGTAAACAAGGCATAA

Coding sequence (CDS)

ATGGCTTCCATCTCATCCATATTATCGCCAACCAATCTCATCCACTGCTCCACAAAATCCATCGAAACCCCACAAAAATTATCCAGTCAATTTCTCCGACCAATCTCATTTCACCGCCGTCATACCCTCCTCCGCCTCTCTCCCGGTCTTCAATCCTCCGCCACAAAACGCCCCGCCAGACTCTTCGCCGTCGCAGAAGCGGCGACCCAGAATCCCAGTTCGGTGGCGACAAGGAAACTGTACATTGGGAATATACCTAGAAATGTGGATAATGAGGAGCTCACTCGGATTGTCGAAGAACATGGGGCCGTGGAGAAGGCTGAGGTCATGTATGACAAATACTCTGGAAGAAGCCGCAGATTTGCCTTCGTTACCATGAAAACAGTTGACGACGCAAATGCCGCAATTGAGAAACTGAATGAGACAGAAGTTGGAGGACGTACGATTAAAGTGAACATAACTGAAAAACCTTTGGTTAATACAGCAGTTGATCTGTCATTTCTTCAGGCAGAGGAATCCCAGTTCATCGACAGTCCCTACAAAGTATACGTAGGAAATATTTCGAGTACAGTTTCTACTGAAACACTAAAAAATTTCTTCTCTGAGAAGGTTAAAGTTCTCAGTGCAAAGGTTTCACGGGTTCCCGGTACCTCGAAATCAAGTGGCTACGGTTTTGTTACCTTTCCTTCAGAGGAGGAAGTTGAAGCTGCCATTTCATCTTTTAACAATGCTTTGTTGGAAGGCCAACCTATCCGTGTAAACAAGGCATAA

Protein sequence

MASISSILSPTNLIHCSTKSIETPQKLSSQFLRPISFHRRHTLLRLSPGLQSSATKRPARLFAVAEAATQNPSSVATRKLYIGNIPRNVDNEELTRIVEEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVDDANAAIEKLNETEVGGRTIKVNITEKPLVNTAVDLSFLQAEESQFIDSPYKVYVGNISSTVSTETLKNFFSEKVKVLSAKVSRVPGTSKSSGYGFVTFPSEEEVEAAISSFNNALLEGQPIRVNKA

Homology

[Close]

BLAST of Lag0002802 vs. NCBI nr
Match: XP_022991923.1 (30S ribosomal protein 2, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 417.9 bits (1073), Expect = 6.2e-113
Identity = 228/258 (88.37%), Postives = 237/258 (91.86%), Query Frame = 0


Query: 1   MASISSILSPTNLIHCSTKSIETPQKLSSQFLRPISFHRRHTLLRLSPGLQSSATKRPAR 60
           MASISSIL+P NLIH S K  E PQ LS+QFLRPISFH R+TLLR+SPGLQ+SA KR  R
Sbjct: 1   MASISSILTPANLIHSSIKPTEIPQNLSTQFLRPISFHPRYTLLRVSPGLQTSAGKRRTR 60

Query: 61  LFAVAEAA--TQNPSSVATRKLYIGNIPRNVDNEELTRIVEEHGAVEKAEVMYDKYSGRS 120
           LFAVAEAA   Q+PSSVA RKLYIGNIPRNV NEELTRIVEEHGAVEKAEVMYDKYSGRS
Sbjct: 61  LFAVAEAAVSVQDPSSVAARKLYIGNIPRNVGNEELTRIVEEHGAVEKAEVMYDKYSGRS 120

Query: 121 RRFAFVTMKTVDDANAAIEKLNETEVGGRTIKVNITEKPLVNTAVDLSFLQAEESQFIDS 180
           RRFAFVTMKTVDDANA IEKLN+TEVGGRTIKVNITEKPLVNT VD+S LQA+ESQFIDS
Sbjct: 121 RRFAFVTMKTVDDANAVIEKLNDTEVGGRTIKVNITEKPLVNT-VDMSLLQADESQFIDS 180

Query: 181 PYKVYVGNISSTVSTETLKNFFSEKVKVLSAKVSRVPGTSKSSGYGFVTFPSEEEVEAAI 240
           PYKVYVGNISSTVSTETLKNFFSEK KVLSAKVSRVPGTSKSSGYGFVTF SEEEVEAAI
Sbjct: 181 PYKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAI 240

Query: 241 SSFNNALLEGQPIRVNKA 257
           SSFNNALLEGQPIRVNKA
Sbjct: 241 SSFNNALLEGQPIRVNKA 257

[Close]

BLAST of Lag0002802 vs. NCBI nr
Match: XP_022954329.1 (30S ribosomal protein 2, chloroplastic-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 417.5 bits (1072), Expect = 8.1e-113
Identity = 228/258 (88.37%), Postives = 237/258 (91.86%), Query Frame = 0


Query: 1   MASISSILSPTNLIHCSTKSIETPQKLSSQFLRPISFHRRHTLLRLSPGLQSSATKRPAR 60
           MASISSIL+P NLIH S K  E PQ LS+QFLRPISFH R+TLLR+SPGLQ+SA KR  R
Sbjct: 1   MASISSILTPANLIHSSIKPTEIPQTLSTQFLRPISFHPRYTLLRVSPGLQTSAGKRRTR 60

Query: 61  LFAVAEAA--TQNPSSVATRKLYIGNIPRNVDNEELTRIVEEHGAVEKAEVMYDKYSGRS 120
           LFAVAEAA   Q+PSSVA RKLYIGNIPRNV NEELTRIVEEHGAVEKAEVMYDKYSGRS
Sbjct: 61  LFAVAEAAVSVQDPSSVAARKLYIGNIPRNVGNEELTRIVEEHGAVEKAEVMYDKYSGRS 120

Query: 121 RRFAFVTMKTVDDANAAIEKLNETEVGGRTIKVNITEKPLVNTAVDLSFLQAEESQFIDS 180
           RRFAFVTMKTVDDANA IEKLN+TEVGGRTIKVNITEKPLVNT VD+S LQA+ESQFIDS
Sbjct: 121 RRFAFVTMKTVDDANAVIEKLNDTEVGGRTIKVNITEKPLVNT-VDMSLLQADESQFIDS 180

Query: 181 PYKVYVGNISSTVSTETLKNFFSEKVKVLSAKVSRVPGTSKSSGYGFVTFPSEEEVEAAI 240
           PYKVYVGNISSTVSTETLKNFFSEK KVLSAKVSRVPGTSKSSGYGFVTF SEEEVEAAI
Sbjct: 181 PYKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAI 240

Query: 241 SSFNNALLEGQPIRVNKA 257
           SSFNNALLEGQPIRVNKA
Sbjct: 241 SSFNNALLEGQPIRVNKA 257

[Close]

BLAST of Lag0002802 vs. NCBI nr
Match: XP_022954328.1 (30S ribosomal protein 2, chloroplastic-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 417.5 bits (1072), Expect = 8.1e-113
Identity = 228/258 (88.37%), Postives = 237/258 (91.86%), Query Frame = 0


Query: 1   MASISSILSPTNLIHCSTKSIETPQKLSSQFLRPISFHRRHTLLRLSPGLQSSATKRPAR 60
           MASISSIL+P NLIH S K  E PQ LS+QFLRPISFH R+TLLR+SPGLQ+SA KR  R
Sbjct: 23  MASISSILTPANLIHSSIKPTEIPQTLSTQFLRPISFHPRYTLLRVSPGLQTSAGKRRTR 82

Query: 61  LFAVAEAA--TQNPSSVATRKLYIGNIPRNVDNEELTRIVEEHGAVEKAEVMYDKYSGRS 120
           LFAVAEAA   Q+PSSVA RKLYIGNIPRNV NEELTRIVEEHGAVEKAEVMYDKYSGRS
Sbjct: 83  LFAVAEAAVSVQDPSSVAARKLYIGNIPRNVGNEELTRIVEEHGAVEKAEVMYDKYSGRS 142

Query: 121 RRFAFVTMKTVDDANAAIEKLNETEVGGRTIKVNITEKPLVNTAVDLSFLQAEESQFIDS 180
           RRFAFVTMKTVDDANA IEKLN+TEVGGRTIKVNITEKPLVNT VD+S LQA+ESQFIDS
Sbjct: 143 RRFAFVTMKTVDDANAVIEKLNDTEVGGRTIKVNITEKPLVNT-VDMSLLQADESQFIDS 202

Query: 181 PYKVYVGNISSTVSTETLKNFFSEKVKVLSAKVSRVPGTSKSSGYGFVTFPSEEEVEAAI 240
           PYKVYVGNISSTVSTETLKNFFSEK KVLSAKVSRVPGTSKSSGYGFVTF SEEEVEAAI
Sbjct: 203 PYKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAI 262

Query: 241 SSFNNALLEGQPIRVNKA 257
           SSFNNALLEGQPIRVNKA
Sbjct: 263 SSFNNALLEGQPIRVNKA 279

[Close]

BLAST of Lag0002802 vs. NCBI nr
Match: KAG6575671.1 (30S ribosomal protein 2, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014222.1 30S ribosomal protein 2, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 416.4 bits (1069), Expect = 1.8e-112
Identity = 227/258 (87.98%), Postives = 236/258 (91.47%), Query Frame = 0


Query: 1   MASISSILSPTNLIHCSTKSIETPQKLSSQFLRPISFHRRHTLLRLSPGLQSSATKRPAR 60
           MASISSIL+P NLIH S K  E PQ LS+QFLRPISFH R+TLLR+SPGLQ+SA KR  R
Sbjct: 1   MASISSILTPANLIHSSIKPTEIPQNLSTQFLRPISFHPRYTLLRVSPGLQTSAGKRRTR 60

Query: 61  LFAVAEAA--TQNPSSVATRKLYIGNIPRNVDNEELTRIVEEHGAVEKAEVMYDKYSGRS 120
           LFAVAE A   Q+PSSVA RKLYIGNIPRNV NEELTRIVEEHGAVEKAEVMYDKYSGRS
Sbjct: 61  LFAVAEVAVSVQDPSSVAARKLYIGNIPRNVGNEELTRIVEEHGAVEKAEVMYDKYSGRS 120

Query: 121 RRFAFVTMKTVDDANAAIEKLNETEVGGRTIKVNITEKPLVNTAVDLSFLQAEESQFIDS 180
           RRFAFVTMKTVDDANA IEKLN+TEVGGRTIKVNITEKPLVNT VD+S LQA+ESQFIDS
Sbjct: 121 RRFAFVTMKTVDDANAVIEKLNDTEVGGRTIKVNITEKPLVNT-VDMSLLQADESQFIDS 180

Query: 181 PYKVYVGNISSTVSTETLKNFFSEKVKVLSAKVSRVPGTSKSSGYGFVTFPSEEEVEAAI 240
           PYKVYVGNISSTVSTETLKNFFSEK KVLSAKVSRVPGTSKSSGYGFVTF SEEEVEAAI
Sbjct: 181 PYKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAI 240

Query: 241 SSFNNALLEGQPIRVNKA 257
           SSFNNALLEGQPIRVNKA
Sbjct: 241 SSFNNALLEGQPIRVNKA 257

[Close]

BLAST of Lag0002802 vs. NCBI nr
Match: XP_023548333.1 (30S ribosomal protein 2, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 413.3 bits (1061), Expect = 1.5e-111
Identity = 226/258 (87.60%), Postives = 236/258 (91.47%), Query Frame = 0


Query: 1   MASISSILSPTNLIHCSTKSIETPQKLSSQFLRPISFHRRHTLLRLSPGLQSSATKRPAR 60
           MASISSIL+P NLI  S K  E PQ LS+QFLRPISFH R+TLLR+SPGLQ+SA KR  R
Sbjct: 1   MASISSILTPANLIQSSIKPTEIPQNLSTQFLRPISFHPRYTLLRVSPGLQTSAGKRCTR 60

Query: 61  LFAVAEAA--TQNPSSVATRKLYIGNIPRNVDNEELTRIVEEHGAVEKAEVMYDKYSGRS 120
           LFAVAEAA   Q+PSSVA RKLYIGNIPRNV NEELTRIVEEHGAVEKAEVMYDKYSGRS
Sbjct: 61  LFAVAEAAVSVQDPSSVAARKLYIGNIPRNVGNEELTRIVEEHGAVEKAEVMYDKYSGRS 120

Query: 121 RRFAFVTMKTVDDANAAIEKLNETEVGGRTIKVNITEKPLVNTAVDLSFLQAEESQFIDS 180
           RRFAFVTMKTVDDANA IEKLN+TEVGGRTIKVNITEKPLVNT VD+S LQA+ESQFIDS
Sbjct: 121 RRFAFVTMKTVDDANAVIEKLNDTEVGGRTIKVNITEKPLVNT-VDMSLLQADESQFIDS 180

Query: 181 PYKVYVGNISSTVSTETLKNFFSEKVKVLSAKVSRVPGTSKSSGYGFVTFPSEEEVEAAI 240
           PYKVYVGNISSTVST+TLKNFFSEK KVLSAKVSRVPGTSKSSGYGFVTF SEEEVEAAI
Sbjct: 181 PYKVYVGNISSTVSTDTLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAI 240

Query: 241 SSFNNALLEGQPIRVNKA 257
           SSFNNALLEGQPIRVNKA
Sbjct: 241 SSFNNALLEGQPIRVNKA 257

[Close]

BLAST of Lag0002802 vs. ExPASy Swiss-Prot
Match: P82277 (30S ribosomal protein 2, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSRP2 PE=1 SV=1)

HSP 1 Score: 273.9 bits (699), Expect = 1.9e-72
Identity = 152/262 (58.02%), Postives = 193/262 (73.66%), Query Frame = 0


Query: 1   MASISSILSPTNLI-HCSTKSIETPQKLSSQFLRPISFHRRHTLLRLSPGLQSSATKRPA 60
           MA+ISSIL    L+ HCS+ S  +  K SSQ L  +        L+L   + ++      
Sbjct: 1   MATISSILPCHGLLQHCSSSSSSSKPKFSSQNLVQLQSFSNGFGLKLKTRVSTNPPLLKV 60

Query: 61  RLFAVAEAATQNPSSVAT-----RKLYIGNIPRNVDNEELTRIVEEHGAVEKAEVMYDKY 120
           R     E ++ + +S ++     R+LY+GNIPRN++N+EL  IVEEHGA+E AEVMYDKY
Sbjct: 61  RAVVTEETSSSSTASSSSDGEGARRLYVGNIPRNLNNDELRTIVEEHGAIEIAEVMYDKY 120

Query: 121 SGRSRRFAFVTMKTVDDANAAIEKLNETEVGGRTIKVNITEKPLVNTAVDLSFLQAEESQ 180
           SGRSRRF FVTMKTV+DANA IEKLN+TE+GGR IKVNITEKPL    +D++  QAE+SQ
Sbjct: 121 SGRSRRFGFVTMKTVEDANAVIEKLNDTEIGGRKIKVNITEKPL--EGMDIATTQAEDSQ 180

Query: 181 FIDSPYKVYVGNISSTVSTETLKNFFSEKVKVLSAKVSRVPGTSKSSGYGFVTFPSEEEV 240
           F++SPYKVY+GN++ TV+ E LK+FFSEK KVL AKV R PGTSKS+G+GFV+F SEEEV
Sbjct: 181 FVESPYKVYIGNLAKTVTNELLKDFFSEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEEV 240

Query: 241 EAAISSFNNALLEGQPIRVNKA 257
           EAAI + NN++LEGQ IRVNKA
Sbjct: 241 EAAIQALNNSVLEGQKIRVNKA 260

[Close]

BLAST of Lag0002802 vs. ExPASy Swiss-Prot
Match: Q8VYM4 (30S ribosomal protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSRP2 PE=2 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 9.7e-69
Identity = 137/199 (68.84%), Postives = 164/199 (82.41%), Query Frame = 0


Query: 62  FAVAEA----ATQNPSSVATRKLYIGNIPRNVDNEELTRIVEEHGAVEKAEVMYDKYSGR 121
           +AV E     A  +PSS A R++YIGNIPR V NE+LT++VEEHGAVEK +VMYDKYSGR
Sbjct: 56  YAVTETEEKPAALDPSSEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGR 115

Query: 122 SRRFAFVTMKTVDDANAAIEKLNETEVGGRTIKVNITEKPLVNTAVDLSFLQAEESQFID 181
           SRRF F TMK+V+DANA +EKLN   V GR IKVNITEKP+ ++  DLS LQ+E+S F+D
Sbjct: 116 SRRFGFATMKSVEDANAVVEKLNGNTVEGREIKVNITEKPIASSP-DLSVLQSEDSAFVD 175

Query: 182 SPYKVYVGNISSTVSTETLKNFFSEKVKVLSAKVSRVPGTSKSSGYGFVTFPSEEEVEAA 241
           SPYKVYVGN++ TV+ E L+N FSEK KV+SAKVSRVPGTSKS+G+GFVTF SEE+VEAA
Sbjct: 176 SPYKVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAA 235

Query: 242 ISSFNNALLEGQPIRVNKA 257
           I + NN+LLEGQ IRVNKA
Sbjct: 236 IVALNNSLLEGQKIRVNKA 253

[Close]

BLAST of Lag0002802 vs. ExPASy Swiss-Prot
Match: Q39061 (RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP33 PE=2 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 8.0e-31
Identity = 70/194 (36.08%), Postives = 119/194 (61.34%), Query Frame = 0


Query: 64  VAEAATQNPSSVATRKLYIGNIPRNVDNEELTRIVEEHGAVEKAEVMYDKYSGRSRRFAF 123
           V E      +S    +LY+GN+P  + + EL++I  E G V   +++YDK + RSR F F
Sbjct: 102 VEEEKQTTQASGEEGRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGF 161

Query: 124 VTMKTVDDANAAIEKLNETEVGGRTIKVNITEKPL-VNTAVDLSFLQAEESQFIDSPYKV 183
           VTM ++++A  A++  N +++GGRT+KVN  E P      V  + ++     ++DSP+KV
Sbjct: 162 VTMGSIEEAKEAMQMFNSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPHKV 221

Query: 184 YVGNISSTVSTETLKNFFSEKVKVLSAKVSRVPGTSKSSGYGFVTFPSEEEVEAAISSFN 243
           Y GN+   ++++ LK+ F ++  VL AKV     T +S G+GF++F S E V++A+++ N
Sbjct: 222 YAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMN 281

Query: 244 NALLEGQPIRVNKA 257
              +EG+ +R+N A
Sbjct: 282 GVEVEGRALRLNLA 295

[Close]

BLAST of Lag0002802 vs. ExPASy Swiss-Prot
Match: P19684 (33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 8.0e-31
Identity = 71/184 (38.59%), Postives = 119/184 (64.67%), Query Frame = 0


Query: 74  SVATRKLYIGNIPRNVDNEELTRIVEEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVDDAN 133
           SV   +LY+GN+P ++ + +L+ I  E G V   E++YD+ + RSR FAFVTM +V++A 
Sbjct: 110 SVEGGRLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAK 169

Query: 134 AAIEKLNETEVGGRTIKVNITEKPLVNTAVDLSF-LQAEESQFIDSPYKVYVGNISSTVS 193
            AI   + ++VGGRT+KVN  E P       +S  +++    F+DSP+K+YV N+S  ++
Sbjct: 170 EAIRLFDGSQVGGRTVKVNFPEVPRGGEREVMSAKIRSTYQGFVDSPHKLYVANLSWALT 229

Query: 194 TETLKNFFSEKVKVLSAKVSRVPGTSKSSGYGFVTFPSEEEVEAAISSFNNALLEGQPIR 253
           ++ L++ F+++   +SAKV     + +S G+GF+TF S E + +A+ + N   LEG+P+R
Sbjct: 230 SQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTMNEVELEGRPLR 289

Query: 254 VNKA 257
           +N A
Sbjct: 290 LNVA 293

[Close]

BLAST of Lag0002802 vs. ExPASy Swiss-Prot
Match: Q9ZUU4 (RNA-binding protein CP29B, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP29B PE=1 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 3.2e-27
Identity = 78/204 (38.24%), Postives = 115/204 (56.37%), Query Frame = 0


Query: 67  AATQNPSSVATRKLYIGNIPRNVDNEELTRIVEEHGAVEKAEVMYDKYSGRSRRFAFVTM 126
           A  +  S  A  KL++GN+P NVD+ +L ++ E  G VE  EV+YDK +GRSR F FVTM
Sbjct: 80  APPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTM 139

Query: 127 KTVDDANAAIEKLNETEVGGRTIKVNITEKPLVNTAVDLSFLQAEESQF----------- 186
            +V +  AA ++ N  E+ GR ++VN    P      +  F +   S F           
Sbjct: 140 SSVSEVEAAAQQFNGYELDGRPLRVNAGPPP---PKREDGFSRGPRSSFGSSGSGYGGGG 199

Query: 187 ---IDSPYKVYVGNISSTVSTETLKNFFSEKVKVLSAKVSRVPGTSKSSGYGFVTFPSEE 246
                S  +VYVGN+S  V    L++ FSE+ KV+ A+V     + +S G+GFVT+ S +
Sbjct: 200 GSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQ 259

Query: 247 EVEAAISSFNNALLEGQPIRVNKA 257
           EV+ AI S + A L+G+ IRV++A
Sbjct: 260 EVQNAIKSLDGADLDGRQIRVSEA 280

[Close]

BLAST of Lag0002802 vs. ExPASy TrEMBL
Match: A0A6J1JXN0 (30S ribosomal protein 2, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111488418 PE=4 SV=1)

HSP 1 Score: 417.9 bits (1073), Expect = 3.0e-113
Identity = 228/258 (88.37%), Postives = 237/258 (91.86%), Query Frame = 0


Query: 1   MASISSILSPTNLIHCSTKSIETPQKLSSQFLRPISFHRRHTLLRLSPGLQSSATKRPAR 60
           MASISSIL+P NLIH S K  E PQ LS+QFLRPISFH R+TLLR+SPGLQ+SA KR  R
Sbjct: 1   MASISSILTPANLIHSSIKPTEIPQNLSTQFLRPISFHPRYTLLRVSPGLQTSAGKRRTR 60

Query: 61  LFAVAEAA--TQNPSSVATRKLYIGNIPRNVDNEELTRIVEEHGAVEKAEVMYDKYSGRS 120
           LFAVAEAA   Q+PSSVA RKLYIGNIPRNV NEELTRIVEEHGAVEKAEVMYDKYSGRS
Sbjct: 61  LFAVAEAAVSVQDPSSVAARKLYIGNIPRNVGNEELTRIVEEHGAVEKAEVMYDKYSGRS 120

Query: 121 RRFAFVTMKTVDDANAAIEKLNETEVGGRTIKVNITEKPLVNTAVDLSFLQAEESQFIDS 180
           RRFAFVTMKTVDDANA IEKLN+TEVGGRTIKVNITEKPLVNT VD+S LQA+ESQFIDS
Sbjct: 121 RRFAFVTMKTVDDANAVIEKLNDTEVGGRTIKVNITEKPLVNT-VDMSLLQADESQFIDS 180

Query: 181 PYKVYVGNISSTVSTETLKNFFSEKVKVLSAKVSRVPGTSKSSGYGFVTFPSEEEVEAAI 240
           PYKVYVGNISSTVSTETLKNFFSEK KVLSAKVSRVPGTSKSSGYGFVTF SEEEVEAAI
Sbjct: 181 PYKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAI 240

Query: 241 SSFNNALLEGQPIRVNKA 257
           SSFNNALLEGQPIRVNKA
Sbjct: 241 SSFNNALLEGQPIRVNKA 257

[Close]

BLAST of Lag0002802 vs. ExPASy TrEMBL
Match: A0A6J1GSN8 (30S ribosomal protein 2, chloroplastic-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111456607 PE=4 SV=1)

HSP 1 Score: 417.5 bits (1072), Expect = 3.9e-113
Identity = 228/258 (88.37%), Postives = 237/258 (91.86%), Query Frame = 0


Query: 1   MASISSILSPTNLIHCSTKSIETPQKLSSQFLRPISFHRRHTLLRLSPGLQSSATKRPAR 60
           MASISSIL+P NLIH S K  E PQ LS+QFLRPISFH R+TLLR+SPGLQ+SA KR  R
Sbjct: 1   MASISSILTPANLIHSSIKPTEIPQTLSTQFLRPISFHPRYTLLRVSPGLQTSAGKRRTR 60

Query: 61  LFAVAEAA--TQNPSSVATRKLYIGNIPRNVDNEELTRIVEEHGAVEKAEVMYDKYSGRS 120
           LFAVAEAA   Q+PSSVA RKLYIGNIPRNV NEELTRIVEEHGAVEKAEVMYDKYSGRS
Sbjct: 61  LFAVAEAAVSVQDPSSVAARKLYIGNIPRNVGNEELTRIVEEHGAVEKAEVMYDKYSGRS 120

Query: 121 RRFAFVTMKTVDDANAAIEKLNETEVGGRTIKVNITEKPLVNTAVDLSFLQAEESQFIDS 180
           RRFAFVTMKTVDDANA IEKLN+TEVGGRTIKVNITEKPLVNT VD+S LQA+ESQFIDS
Sbjct: 121 RRFAFVTMKTVDDANAVIEKLNDTEVGGRTIKVNITEKPLVNT-VDMSLLQADESQFIDS 180

Query: 181 PYKVYVGNISSTVSTETLKNFFSEKVKVLSAKVSRVPGTSKSSGYGFVTFPSEEEVEAAI 240
           PYKVYVGNISSTVSTETLKNFFSEK KVLSAKVSRVPGTSKSSGYGFVTF SEEEVEAAI
Sbjct: 181 PYKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAI 240

Query: 241 SSFNNALLEGQPIRVNKA 257
           SSFNNALLEGQPIRVNKA
Sbjct: 241 SSFNNALLEGQPIRVNKA 257

[Close]

BLAST of Lag0002802 vs. ExPASy TrEMBL
Match: A0A6J1GQT6 (30S ribosomal protein 2, chloroplastic-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111456607 PE=4 SV=1)

HSP 1 Score: 417.5 bits (1072), Expect = 3.9e-113
Identity = 228/258 (88.37%), Postives = 237/258 (91.86%), Query Frame = 0


Query: 1   MASISSILSPTNLIHCSTKSIETPQKLSSQFLRPISFHRRHTLLRLSPGLQSSATKRPAR 60
           MASISSIL+P NLIH S K  E PQ LS+QFLRPISFH R+TLLR+SPGLQ+SA KR  R
Sbjct: 23  MASISSILTPANLIHSSIKPTEIPQTLSTQFLRPISFHPRYTLLRVSPGLQTSAGKRRTR 82

Query: 61  LFAVAEAA--TQNPSSVATRKLYIGNIPRNVDNEELTRIVEEHGAVEKAEVMYDKYSGRS 120
           LFAVAEAA   Q+PSSVA RKLYIGNIPRNV NEELTRIVEEHGAVEKAEVMYDKYSGRS
Sbjct: 83  LFAVAEAAVSVQDPSSVAARKLYIGNIPRNVGNEELTRIVEEHGAVEKAEVMYDKYSGRS 142

Query: 121 RRFAFVTMKTVDDANAAIEKLNETEVGGRTIKVNITEKPLVNTAVDLSFLQAEESQFIDS 180
           RRFAFVTMKTVDDANA IEKLN+TEVGGRTIKVNITEKPLVNT VD+S LQA+ESQFIDS
Sbjct: 143 RRFAFVTMKTVDDANAVIEKLNDTEVGGRTIKVNITEKPLVNT-VDMSLLQADESQFIDS 202

Query: 181 PYKVYVGNISSTVSTETLKNFFSEKVKVLSAKVSRVPGTSKSSGYGFVTFPSEEEVEAAI 240
           PYKVYVGNISSTVSTETLKNFFSEK KVLSAKVSRVPGTSKSSGYGFVTF SEEEVEAAI
Sbjct: 203 PYKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAI 262

Query: 241 SSFNNALLEGQPIRVNKA 257
           SSFNNALLEGQPIRVNKA
Sbjct: 263 SSFNNALLEGQPIRVNKA 279

[Close]

BLAST of Lag0002802 vs. ExPASy TrEMBL
Match: A0A5A7UYL6 (30S ribosomal protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G001110 PE=4 SV=1)

HSP 1 Score: 403.7 bits (1036), Expect = 5.8e-109
Identity = 223/256 (87.11%), Postives = 230/256 (89.84%), Query Frame = 0


Query: 1   MASISSILSPTNLIHCSTKSIETPQKLSSQFLRPISFHRRHTLLRLSPGLQSSATKRPAR 60
           MASISSIL+PTNLIH S K  E  Q LSSQFLRPISFH  H LLR+SP     A + P R
Sbjct: 1   MASISSILTPTNLIHTSKKPTEISQALSSQFLRPISFHPPHILLRISP----VAARPPTR 60

Query: 61  LFAVAEAATQNPSSVATRKLYIGNIPRNVDNEELTRIVEEHGAVEKAEVMYDKYSGRSRR 120
           LFAVAEAATQ  SSVA RKLYIGNIPRNV+NEELTRIV+EHGAVEKAEVMYDKYSGRSRR
Sbjct: 61  LFAVAEAATQGASSVAERKLYIGNIPRNVNNEELTRIVQEHGAVEKAEVMYDKYSGRSRR 120

Query: 121 FAFVTMKTVDDANAAIEKLNETEVGGRTIKVNITEKPLVNTAVDLSFLQAEESQFIDSPY 180
           FAFVTMKTV+DANAAIEKLNETEVGGR IKVNITEKP+VNT VDLS LQAEESQFIDSPY
Sbjct: 121 FAFVTMKTVEDANAAIEKLNETEVGGRKIKVNITEKPVVNT-VDLSILQAEESQFIDSPY 180

Query: 181 KVYVGNISSTVSTETLKNFFSEKVKVLSAKVSRVPGTSKSSGYGFVTFPSEEEVEAAISS 240
           KVYVGNISSTVSTETLKNFFSEK KVLSAKVSRVPGTSKSSGYGFVTF SEEEVEAAISS
Sbjct: 181 KVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAISS 240

Query: 241 FNNALLEGQPIRVNKA 257
           FNNALLEGQPIRVNKA
Sbjct: 241 FNNALLEGQPIRVNKA 251

[Close]

BLAST of Lag0002802 vs. ExPASy TrEMBL
Match: A0A1S3CEQ4 (30S ribosomal protein 2, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103499898 PE=4 SV=1)

HSP 1 Score: 403.7 bits (1036), Expect = 5.8e-109
Identity = 223/256 (87.11%), Postives = 230/256 (89.84%), Query Frame = 0


Query: 1   MASISSILSPTNLIHCSTKSIETPQKLSSQFLRPISFHRRHTLLRLSPGLQSSATKRPAR 60
           MASISSIL+PTNLIH S K  E  Q LSSQFLRPISFH  H LLR+SP     A + P R
Sbjct: 1   MASISSILTPTNLIHTSKKPTEISQALSSQFLRPISFHPPHILLRISP----VAARPPTR 60

Query: 61  LFAVAEAATQNPSSVATRKLYIGNIPRNVDNEELTRIVEEHGAVEKAEVMYDKYSGRSRR 120
           LFAVAEAATQ  SSVA RKLYIGNIPRNV+NEELTRIV+EHGAVEKAEVMYDKYSGRSRR
Sbjct: 61  LFAVAEAATQGASSVAERKLYIGNIPRNVNNEELTRIVQEHGAVEKAEVMYDKYSGRSRR 120

Query: 121 FAFVTMKTVDDANAAIEKLNETEVGGRTIKVNITEKPLVNTAVDLSFLQAEESQFIDSPY 180
           FAFVTMKTV+DANAAIEKLNETEVGGR IKVNITEKP+VNT VDLS LQAEESQFIDSPY
Sbjct: 121 FAFVTMKTVEDANAAIEKLNETEVGGRKIKVNITEKPVVNT-VDLSILQAEESQFIDSPY 180

Query: 181 KVYVGNISSTVSTETLKNFFSEKVKVLSAKVSRVPGTSKSSGYGFVTFPSEEEVEAAISS 240
           KVYVGNISSTVSTETLKNFFSEK KVLSAKVSRVPGTSKSSGYGFVTF SEEEVEAAISS
Sbjct: 181 KVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAISS 240

Query: 241 FNNALLEGQPIRVNKA 257
           FNNALLEGQPIRVNKA
Sbjct: 241 FNNALLEGQPIRVNKA 251

[Close]

BLAST of Lag0002802 vs. TAIR 10
Match: AT3G52150.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 261.5 bits (667), Expect = 6.9e-70
Identity = 137/199 (68.84%), Postives = 164/199 (82.41%), Query Frame = 0


Query: 62  FAVAEA----ATQNPSSVATRKLYIGNIPRNVDNEELTRIVEEHGAVEKAEVMYDKYSGR 121
           +AV E     A  +PSS A R++YIGNIPR V NE+LT++VEEHGAVEK +VMYDKYSGR
Sbjct: 56  YAVTETEEKPAALDPSSEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGR 115

Query: 122 SRRFAFVTMKTVDDANAAIEKLNETEVGGRTIKVNITEKPLVNTAVDLSFLQAEESQFID 181
           SRRF F TMK+V+DANA +EKLN   V GR IKVNITEKP+ ++  DLS LQ+E+S F+D
Sbjct: 116 SRRFGFATMKSVEDANAVVEKLNGNTVEGREIKVNITEKPIASSP-DLSVLQSEDSAFVD 175

Query: 182 SPYKVYVGNISSTVSTETLKNFFSEKVKVLSAKVSRVPGTSKSSGYGFVTFPSEEEVEAA 241
           SPYKVYVGN++ TV+ E L+N FSEK KV+SAKVSRVPGTSKS+G+GFVTF SEE+VEAA
Sbjct: 176 SPYKVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAA 235

Query: 242 ISSFNNALLEGQPIRVNKA 257
           I + NN+LLEGQ IRVNKA
Sbjct: 236 IVALNNSLLEGQKIRVNKA 253

[Close]

BLAST of Lag0002802 vs. TAIR 10
Match: AT3G52150.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 261.5 bits (667), Expect = 6.9e-70
Identity = 137/199 (68.84%), Postives = 164/199 (82.41%), Query Frame = 0


Query: 62  FAVAEA----ATQNPSSVATRKLYIGNIPRNVDNEELTRIVEEHGAVEKAEVMYDKYSGR 121
           +AV E     A  +PSS A R++YIGNIPR V NE+LT++VEEHGAVEK +VMYDKYSGR
Sbjct: 56  YAVTETEEKPAALDPSSEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGR 115

Query: 122 SRRFAFVTMKTVDDANAAIEKLNETEVGGRTIKVNITEKPLVNTAVDLSFLQAEESQFID 181
           SRRF F TMK+V+DANA +EKLN   V GR IKVNITEKP+ ++  DLS LQ+E+S F+D
Sbjct: 116 SRRFGFATMKSVEDANAVVEKLNGNTVEGREIKVNITEKPIASSP-DLSVLQSEDSAFVD 175

Query: 182 SPYKVYVGNISSTVSTETLKNFFSEKVKVLSAKVSRVPGTSKSSGYGFVTFPSEEEVEAA 241
           SPYKVYVGN++ TV+ E L+N FSEK KV+SAKVSRVPGTSKS+G+GFVTF SEE+VEAA
Sbjct: 176 SPYKVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAA 235

Query: 242 ISSFNNALLEGQPIRVNKA 257
           I + NN+LLEGQ IRVNKA
Sbjct: 236 IVALNNSLLEGQKIRVNKA 253

[Close]

BLAST of Lag0002802 vs. TAIR 10
Match: AT3G52380.1 (chloroplast RNA-binding protein 33 )

HSP 1 Score: 135.6 bits (340), Expect = 5.7e-32
Identity = 70/194 (36.08%), Postives = 119/194 (61.34%), Query Frame = 0


Query: 64  VAEAATQNPSSVATRKLYIGNIPRNVDNEELTRIVEEHGAVEKAEVMYDKYSGRSRRFAF 123
           V E      +S    +LY+GN+P  + + EL++I  E G V   +++YDK + RSR F F
Sbjct: 102 VEEEKQTTQASGEEGRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGF 161

Query: 124 VTMKTVDDANAAIEKLNETEVGGRTIKVNITEKPL-VNTAVDLSFLQAEESQFIDSPYKV 183
           VTM ++++A  A++  N +++GGRT+KVN  E P      V  + ++     ++DSP+KV
Sbjct: 162 VTMGSIEEAKEAMQMFNSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPHKV 221

Query: 184 YVGNISSTVSTETLKNFFSEKVKVLSAKVSRVPGTSKSSGYGFVTFPSEEEVEAAISSFN 243
           Y GN+   ++++ LK+ F ++  VL AKV     T +S G+GF++F S E V++A+++ N
Sbjct: 222 YAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMN 281

Query: 244 NALLEGQPIRVNKA 257
              +EG+ +R+N A
Sbjct: 282 GVEVEGRALRLNLA 295

[Close]

BLAST of Lag0002802 vs. TAIR 10
Match: AT1G60000.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 132.5 bits (332), Expect = 4.8e-31
Identity = 91/263 (34.60%), Postives = 141/263 (53.61%), Query Frame = 0


Query: 1   MASISSILS------PTNLIH-CSTKSIETPQKLSSQFLRPISFHRRHTLLRLSPGLQSS 60
           MA+ S +LS        NL+H C+  S +T  + +    +P+    R    R     ++ 
Sbjct: 1   MAASSVLLSCFKSHHQPNLLHGCNYSSNQTLLRFNFSTPKPLLISSRSCSRRFRVLSETI 60

Query: 61  ATKRPARLFAVAEAATQNPSSVATRKLYIGNIPRNVDNEELTRIVEEHGAVEKAEVMYDK 120
             K          +A  +P +    KLY GN+P NVD+  L +I+++    E  EV+Y++
Sbjct: 61  TVKLEEEEKDDGASAVLDPPAAVNTKLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNR 120

Query: 121 YSGRSRRFAFVTMKTVDDANAAIEKLNETEVGGRTIKVNITEKPLVNTAVDLSFLQAEES 180
            +G+SR FAFVTM  V+D N  I+ L+ TE  GR +KVN  +KP  N          +E 
Sbjct: 121 DTGQSRGFAFVTMSNVEDCNIIIDNLDGTEYLGRALKVNFADKPKPN----------KEP 180

Query: 181 QFIDSPYKVYVGNISSTVSTETLKNFFSEKVKVLSAKVSRVPGTSKSSGYGFVTFPSEEE 240
            + ++ +K++VGN+S TV++E+L   F E   V+ A+V     T +S GYGFV + S+ E
Sbjct: 181 LYPETEHKLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAE 240

Query: 241 VEAAISSFNNALLEGQPIRVNKA 257
           +E A+ S +   LEG+ IRVN A
Sbjct: 241 METALESLDGFELEGRAIRVNLA 253

[Close]

BLAST of Lag0002802 vs. TAIR 10
Match: AT2G37220.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 123.6 bits (309), Expect = 2.2e-28
Identity = 78/204 (38.24%), Postives = 115/204 (56.37%), Query Frame = 0


Query: 67  AATQNPSSVATRKLYIGNIPRNVDNEELTRIVEEHGAVEKAEVMYDKYSGRSRRFAFVTM 126
           A  +  S  A  KL++GN+P NVD+ +L ++ E  G VE  EV+YDK +GRSR F FVTM
Sbjct: 80  APPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTM 139

Query: 127 KTVDDANAAIEKLNETEVGGRTIKVNITEKPLVNTAVDLSFLQAEESQF----------- 186
            +V +  AA ++ N  E+ GR ++VN    P      +  F +   S F           
Sbjct: 140 SSVSEVEAAAQQFNGYELDGRPLRVNAGPPP---PKREDGFSRGPRSSFGSSGSGYGGGG 199

Query: 187 ---IDSPYKVYVGNISSTVSTETLKNFFSEKVKVLSAKVSRVPGTSKSSGYGFVTFPSEE 246
                S  +VYVGN+S  V    L++ FSE+ KV+ A+V     + +S G+GFVT+ S +
Sbjct: 200 GSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQ 259

Query: 247 EVEAAISSFNNALLEGQPIRVNKA 257
           EV+ AI S + A L+G+ IRV++A
Sbjct: 260 EVQNAIKSLDGADLDGRQIRVSEA 280

The following BLAST results are available for this feature:

BLAST of Lag0002802 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022991923.1	6.2e-113	88.37	30S ribosomal protein 2, chloroplastic-like [Cucurbita maxima]	[more]
XP_022954329.1	8.1e-113	88.37	30S ribosomal protein 2, chloroplastic-like isoform X2 [Cucurbita moschata]	[more]
XP_022954328.1	8.1e-113	88.37	30S ribosomal protein 2, chloroplastic-like isoform X1 [Cucurbita moschata]	[more]
KAG6575671.1	1.8e-112	87.98	30S ribosomal protein 2, chloroplastic, partial [Cucurbita argyrosperma subsp. s...	[more]
XP_023548333.1	1.5e-111	87.60	30S ribosomal protein 2, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Lag0002802 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P82277	1.9e-72	58.02	30S ribosomal protein 2, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSRP2 PE=...	[more]
Q8VYM4	9.7e-69	68.84	30S ribosomal protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSRP2 ...	[more]
Q39061	8.0e-31	36.08	RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP33 ...	[more]
P19684	8.0e-31	38.59	33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=...	[more]
Q9ZUU4	3.2e-27	38.24	RNA-binding protein CP29B, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP29...	[more]

BLAST of Lag0002802 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JXN0	3.0e-113	88.37	30S ribosomal protein 2, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A6J1GSN8	3.9e-113	88.37	30S ribosomal protein 2, chloroplastic-like isoform X2 OS=Cucurbita moschata OX=...	[more]
A0A6J1GQT6	3.9e-113	88.37	30S ribosomal protein 2, chloroplastic-like isoform X1 OS=Cucurbita moschata OX=...	[more]
A0A5A7UYL6	5.8e-109	87.11	30S ribosomal protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3CEQ4	5.8e-109	87.11	30S ribosomal protein 2, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103499898 P...	[more]

BLAST of Lag0002802 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G52150.1	6.9e-70	68.84	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G52150.2	6.9e-70	68.84	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G52380.1	5.7e-32	36.08	chloroplast RNA-binding protein 33	[more]
AT1G60000.1	4.8e-31	34.60	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G37220.1	2.2e-28	38.24	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003954	RNA recognition motif domain, eukaryote	SMART	SM00361	rrm2_1	coord: 79..152 e-value: 1.6 score: 12.1 coord: 181..254 e-value: 0.079 score: 22.1
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 79..152 e-value: 1.9E-26 score: 103.8 coord: 181..254 e-value: 1.5E-20 score: 84.3
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 182..252 e-value: 1.7E-15 score: 56.6 coord: 80..150 e-value: 1.2E-19 score: 69.9
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 180..256 score: 16.738909
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 78..156 score: 18.478559
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 48..159 e-value: 4.4E-27 score: 97.0
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 168..256 e-value: 3.7E-22 score: 80.6
None	No IPR available	PANTHER	PTHR48025	OS02G0815200 PROTEIN	coord: 1..256
None	No IPR available	PANTHER	PTHR48025:SF4	30S RIBOSOMAL PROTEIN 2, CHLOROPLASTIC	coord: 1..256
None	No IPR available	CDD	cd12399	RRM_HP0827_like	coord: 79..156 e-value: 2.06746E-34 score: 116.944
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 64..156
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 175..256

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0002802.1	Lag0002802.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding