Lag0002571 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0002571
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic
Location	chr4: 43901987 .. 43903398 (-)
RNA-Seq Expression	Lag0002571
Synteny	Lag0002571

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATTCACCTTGTACACCTCTCTGTTTTGCCTCCTCTGCTCTCGATTTTGTGGTTTCTGTTCCTTTCTTTTTCTTCTTCTTCTTCTTTTACGAGTTTTCTGTGTTGTTTTTGACTGGAGGGTTGTGGTTTGTTCAGTTGGACAAGGGTCTTTTAAGAGGATTTGACAATGCTGGTGTAATTGTGGCTGAAATGTTTCTTGTTATCTGTTTTTTCAGTGTTTGTTATGTGGGAGATTGAATATGAAGCTTGAAAAAGTTTCAATTAGGACCTGAAATTGTTCATTTCTGCCCATCTACTCTATCGAATTTTCTGAGCTTCCCACTCATTAGTTTGCTCTTTTGTGTCCTATCGTACTAAATTATCATTTGAAAGTTAAAAAGTGTAATTGAAATTTCAATGTTAGGTATTAAACCTTTAAACTTCAATGATTAAATTAATACACCTGTGTGGGAGAAAAGTTATATTTCCAAATATCATCAATTAAAATGGTATCGGATTAGCCTAGTCTTTAATAAGAGCTCATTTATGATGAAGGTTTAGAGGGAATGAATTCATGCCATGGTGGGAACCTACCTAAAATTCAATATCTTACGAGTTTTCTTGGCTACCAAATGTAGTAAGGTCACATTATTGTCATGTGAGATTAGTTGAGATACACGTAAGCTAATCTTGACACTCGTGGGTATAAAAAGAAAACTATTAAAATGTGAGTTGGAAACAAACATCAACATCAGGATAAGAAGTCCCATGTTGCATTTGATCATCAGTTTCTGATTTTAATGTATTTAGATTTTGGTTTCTGTCCAATCCTTGCTGTAAATTGCTTCACATTCCCCAAATTTGTAGATTCATTACCTTGTTTCCTTGGACAGAAAGGCTTCAAGTACCATCCTCAAAGAAATCCAAACTGCAGATTCCAAGCAATCCAATGTAGCTCATCTTTGTTGAGTTCTTTTCCCTCTTCCAAGATTCATCTGTCATTGGCCTATGCCAACCCTCCATTAAAGCCAGCTGCTGCATATGAAGCTGCAAGGACTATCCCCTTTGCCTTGCAAGATGCATCAATTGCTACCTCTGATTTCATGAACAATGTGGCCCTGGCTGACCTCGACCCAGCAACAGCAAAGCTCGCAATTAGCTTTCTGGGGCCGTTTCTCTCGGCGTTTTCGTTTTTGTTTATTGTGAGAATAGTAATGTCCTGGTATCCAAAGTTGCCTGTGGGTAAGTTTCCATATGTTATAGCTTATGCCCCCACTGAACCACTTCTAATTGTAACAAGGAAGGTGATCCCCCCTCTCGGCGGAGTTGACGTAACGCCAGTCGTCTGGTTCGGATTGGTTAGTTTCCTCAACGAGATATTGCTCGGTCCCCAAGGGCTGCTTGTCCTCCTTTCTCAGCAGGTCAGCTGA

mRNA sequence

ATGTATTCACCTTGTACACCTCTCTGTTTTGCCTCCTCTGCTCTCGATTTTGTGGTTTCTGTTCCTTTCTTTTTCTTCTTCTTCTTCTTTTACGAGTTTTCTGTGTTGTTTTTGACTGGAGGGTTGTGGTTTGTTCAGTTGGACAAGGGTCTTTTAAGAGGATTTGACAATGCTGGTGTAATTGTGGCTGAAATGTTTCTTGTTATCTATTTTGGTTTCTGTCCAATCCTTGCTGTAAATTGCTTCACATTCCCCAAATTTGTAGATTCATTACCTTGTTTCCTTGGACAGAAAGGCTTCAAGTACCATCCTCAAAGAAATCCAAACTGCAGATTCCAAGCAATCCAATGTAGCTCATCTTTGTTGAGTTCTTTTCCCTCTTCCAAGATTCATCTGTCATTGGCCTATGCCAACCCTCCATTAAAGCCAGCTGCTGCATATGAAGCTGCAAGGACTATCCCCTTTGCCTTGCAAGATGCATCAATTGCTACCTCTGATTTCATGAACAATGTGGCCCTGGCTGACCTCGACCCAGCAACAGCAAAGCTCGCAATTAGCTTTCTGGGGCCGTTTCTCTCGGCGTTTTCGTTTTTGTTTATTGTGAGAATAGTAATGTCCTGGTATCCAAAGTTGCCTGTGGGTAAGTTTCCATATGTTATAGCTTATGCCCCCACTGAACCACTTCTAATTGTAACAAGGAAGGTGATCCCCCCTCTCGGCGGAGTTGACGTAACGCCAGTCGTCTGGTTCGGATTGGTTAGTTTCCTCAACGAGATATTGCTCGGTCCCCAAGGGCTGCTTGTCCTCCTTTCTCAGCAGGTCAGCTGA

Coding sequence (CDS)

ATGTATTCACCTTGTACACCTCTCTGTTTTGCCTCCTCTGCTCTCGATTTTGTGGTTTCTGTTCCTTTCTTTTTCTTCTTCTTCTTCTTTTACGAGTTTTCTGTGTTGTTTTTGACTGGAGGGTTGTGGTTTGTTCAGTTGGACAAGGGTCTTTTAAGAGGATTTGACAATGCTGGTGTAATTGTGGCTGAAATGTTTCTTGTTATCTATTTTGGTTTCTGTCCAATCCTTGCTGTAAATTGCTTCACATTCCCCAAATTTGTAGATTCATTACCTTGTTTCCTTGGACAGAAAGGCTTCAAGTACCATCCTCAAAGAAATCCAAACTGCAGATTCCAAGCAATCCAATGTAGCTCATCTTTGTTGAGTTCTTTTCCCTCTTCCAAGATTCATCTGTCATTGGCCTATGCCAACCCTCCATTAAAGCCAGCTGCTGCATATGAAGCTGCAAGGACTATCCCCTTTGCCTTGCAAGATGCATCAATTGCTACCTCTGATTTCATGAACAATGTGGCCCTGGCTGACCTCGACCCAGCAACAGCAAAGCTCGCAATTAGCTTTCTGGGGCCGTTTCTCTCGGCGTTTTCGTTTTTGTTTATTGTGAGAATAGTAATGTCCTGGTATCCAAAGTTGCCTGTGGGTAAGTTTCCATATGTTATAGCTTATGCCCCCACTGAACCACTTCTAATTGTAACAAGGAAGGTGATCCCCCCTCTCGGCGGAGTTGACGTAACGCCAGTCGTCTGGTTCGGATTGGTTAGTTTCCTCAACGAGATATTGCTCGGTCCCCAAGGGCTGCTTGTCCTCCTTTCTCAGCAGGTCAGCTGA

Protein sequence

MYSPCTPLCFASSALDFVVSVPFFFFFFFFYEFSVLFLTGGLWFVQLDKGLLRGFDNAGVIVAEMFLVIYFGFCPILAVNCFTFPKFVDSLPCFLGQKGFKYHPQRNPNCRFQAIQCSSSLLSSFPSSKIHLSLAYANPPLKPAAAYEAARTIPFALQDASIATSDFMNNVALADLDPATAKLAISFLGPFLSAFSFLFIVRIVMSWYPKLPVGKFPYVIAYAPTEPLLIVTRKVIPPLGGVDVTPVVWFGLVSFLNEILLGPQGLLVLLSQQVS

Homology

[Close]

BLAST of Lag0002571 vs. NCBI nr
Match: KAA0067975.1 (protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3 [Cucumis melo var. makuwa])

HSP 1 Score: 323.9 bits (829), Expect = 1.3e-84
Identity = 167/192 (86.98%), Postives = 175/192 (91.15%), Query Frame = 0


Query: 84  FPKFVDSLPCFLGQKGFKYHPQRNPNCRFQAIQCSSSLLSSFPSSKIHLSLAYANPPLKP 143
           F K +D LPCFLGQ+GFKYHPQRNPN +FQAI+CSSSLL SF SSKI  SLAY  PPLKP
Sbjct: 10  FAKCLDLLPCFLGQRGFKYHPQRNPNYKFQAIKCSSSLLGSFTSSKILPSLAYVIPPLKP 69

Query: 144 AAAYEAARTIPFALQDASIATSDFMNNVALADLDPATAKLAISFLGPFLSAFSFLFIVRI 203
           AAAYEAARTIPFALQDAS+A SDF+N++ LADLDP TAKLAISFLGP LS FSFLFI RI
Sbjct: 70  AAAYEAARTIPFALQDASMAASDFVNSMTLADLDPGTAKLAISFLGPSLSVFSFLFIARI 129

Query: 204 VMSWYPKLPVGKFPYVIAYAPTEPLLIVTRKVIPPLGGVDVTPVVWFGLVSFLNEILLGP 263
           VMSWYPKLPVGKFPYVIAYAPTEPLLI TRKVIPPLGGVDVTPVVWFGLVSFLNEILLGP
Sbjct: 130 VMSWYPKLPVGKFPYVIAYAPTEPLLIATRKVIPPLGGVDVTPVVWFGLVSFLNEILLGP 189

Query: 264 QGLLVLLSQQVS 276
           QGLLVLLSQQVS
Sbjct: 190 QGLLVLLSQQVS 201

[Close]

BLAST of Lag0002571 vs. NCBI nr
Match: TYK18148.1 (protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3 [Cucumis melo var. makuwa])

HSP 1 Score: 322.4 bits (825), Expect = 3.8e-84
Identity = 166/192 (86.46%), Postives = 175/192 (91.15%), Query Frame = 0


Query: 84  FPKFVDSLPCFLGQKGFKYHPQRNPNCRFQAIQCSSSLLSSFPSSKIHLSLAYANPPLKP 143
           F K +D LPCFLGQ+GFKYHPQRNPN +FQAI+CSSSLL SF SSKI  SLAY  PPLKP
Sbjct: 10  FAKCLDLLPCFLGQRGFKYHPQRNPNYKFQAIKCSSSLLGSFTSSKILPSLAYVIPPLKP 69

Query: 144 AAAYEAARTIPFALQDASIATSDFMNNVALADLDPATAKLAISFLGPFLSAFSFLFIVRI 203
           AAAYEAARTIPFAL+DAS+A SDF+N++ LADLDP TAKLAISFLGP LS FSFLFI RI
Sbjct: 70  AAAYEAARTIPFALRDASMAASDFVNSMTLADLDPGTAKLAISFLGPSLSVFSFLFIARI 129

Query: 204 VMSWYPKLPVGKFPYVIAYAPTEPLLIVTRKVIPPLGGVDVTPVVWFGLVSFLNEILLGP 263
           VMSWYPKLPVGKFPYVIAYAPTEPLLI TRKVIPPLGGVDVTPVVWFGLVSFLNEILLGP
Sbjct: 130 VMSWYPKLPVGKFPYVIAYAPTEPLLIATRKVIPPLGGVDVTPVVWFGLVSFLNEILLGP 189

Query: 264 QGLLVLLSQQVS 276
           QGLLVLLSQQVS
Sbjct: 190 QGLLVLLSQQVS 201

[Close]

BLAST of Lag0002571 vs. NCBI nr
Match: XP_038896183.1 (protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic isoform X2 [Benincasa hispida])

HSP 1 Score: 317.4 bits (812), Expect = 1.2e-82
Identity = 163/186 (87.63%), Postives = 171/186 (91.94%), Query Frame = 0


Query: 90  SLPCFLGQKGFKYHPQRNPNCRFQAIQCSSSLLSSFPSSKIHLSLAYANPPLKPAAAYEA 149
           SL C   ++GFKYHPQRNPNCRFQA +CSSS+L SF +SK+HLSLAYA  PLKPAAAYEA
Sbjct: 11  SLSCI--RRGFKYHPQRNPNCRFQATKCSSSMLDSFTTSKLHLSLAYATAPLKPAAAYEA 70

Query: 150 ARTIPFALQDASIATSDFMNNVALADLDPATAKLAISFLGPFLSAFSFLFIVRIVMSWYP 209
           ARTIPFALQDAS++ SDFMNNVALADLDP  AKLAI FLGPFLSAFSFLFI RIVMSWYP
Sbjct: 71  ARTIPFALQDASMSASDFMNNVALADLDPGMAKLAIGFLGPFLSAFSFLFIARIVMSWYP 130

Query: 210 KLPVGKFPYVIAYAPTEPLLIVTRKVIPPLGGVDVTPVVWFGLVSFLNEILLGPQGLLVL 269
           KLPVGKFPYVIAYAPTEPLLI TRKVIPPLGGVDVTPVVWFGLVSFLNEILLGPQGLLVL
Sbjct: 131 KLPVGKFPYVIAYAPTEPLLIATRKVIPPLGGVDVTPVVWFGLVSFLNEILLGPQGLLVL 190

Query: 270 LSQQVS 276
           LSQQVS
Sbjct: 191 LSQQVS 194

[Close]

BLAST of Lag0002571 vs. NCBI nr
Match: XP_038896182.1 (protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic isoform X1 [Benincasa hispida])

HSP 1 Score: 315.8 bits (808), Expect = 3.6e-82
Identity = 160/178 (89.89%), Postives = 167/178 (93.82%), Query Frame = 0


Query: 98  KGFKYHPQRNPNCRFQAIQCSSSLLSSFPSSKIHLSLAYANPPLKPAAAYEAARTIPFAL 157
           +GFKYHPQRNPNCRFQA +CSSS+L SF +SK+HLSLAYA  PLKPAAAYEAARTIPFAL
Sbjct: 34  RGFKYHPQRNPNCRFQATKCSSSMLDSFTTSKLHLSLAYATAPLKPAAAYEAARTIPFAL 93

Query: 158 QDASIATSDFMNNVALADLDPATAKLAISFLGPFLSAFSFLFIVRIVMSWYPKLPVGKFP 217
           QDAS++ SDFMNNVALADLDP  AKLAI FLGPFLSAFSFLFI RIVMSWYPKLPVGKFP
Sbjct: 94  QDASMSASDFMNNVALADLDPGMAKLAIGFLGPFLSAFSFLFIARIVMSWYPKLPVGKFP 153

Query: 218 YVIAYAPTEPLLIVTRKVIPPLGGVDVTPVVWFGLVSFLNEILLGPQGLLVLLSQQVS 276
           YVIAYAPTEPLLI TRKVIPPLGGVDVTPVVWFGLVSFLNEILLGPQGLLVLLSQQVS
Sbjct: 154 YVIAYAPTEPLLIATRKVIPPLGGVDVTPVVWFGLVSFLNEILLGPQGLLVLLSQQVS 211

[Close]

BLAST of Lag0002571 vs. NCBI nr
Match: XP_004136017.2 (protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic isoform X3 [Cucumis sativus])

HSP 1 Score: 305.4 bits (781), Expect = 4.8e-79
Identity = 155/179 (86.59%), Postives = 165/179 (92.18%), Query Frame = 0


Query: 97  QKGFKYHPQRNPNCRFQAIQCSSSLLSSFPSSKIHLSLAYANPPLKPAAAYEAARTIPFA 156
           ++GFKYHPQRNPNC+FQAI+CSSSLL SF SSK  LSLAY  PPLKPAAAYEAARTIPF 
Sbjct: 13  RRGFKYHPQRNPNCKFQAIKCSSSLLGSFTSSKSLLSLAYVIPPLKPAAAYEAARTIPFT 72

Query: 157 LQDASIATSDFMNNVALADLDPATAKLAISFLGPFLSAFSFLFIVRIVMSWYPKLPVGKF 216
           LQDAS+A SDF+N++ LADLDP TAKLAISFLGP LS FSFLFI RIVMSWYPKLPVGKF
Sbjct: 73  LQDASMAASDFVNSMTLADLDPGTAKLAISFLGPSLSVFSFLFIARIVMSWYPKLPVGKF 132

Query: 217 PYVIAYAPTEPLLIVTRKVIPPLGGVDVTPVVWFGLVSFLNEILLGPQGLLVLLSQQVS 276
           PYVIAYAPTEPLL+ TRKVIPPLGGVDVTPVVWFGL+SFLNEILLGPQGLLVLLSQQVS
Sbjct: 133 PYVIAYAPTEPLLVATRKVIPPLGGVDVTPVVWFGLISFLNEILLGPQGLLVLLSQQVS 191

[Close]

BLAST of Lag0002571 vs. ExPASy Swiss-Prot
Match: Q8RWM7 (Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CCB3 PE=1 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 4.0e-44
Identity = 95/126 (75.40%), Postives = 106/126 (84.13%), Query Frame = 0


Query: 148 EAARTIPFALQDASIATSDFMNNVALADLDPATAKLAISFLGPFLSAFSFLFIVRIVMSW 207
           EAA T     Q  SI  S+ + N++LADLDP TAKLAI  LGP LSAF FLFI+RIVMSW
Sbjct: 48  EAATTTNLIRQTNSI--SESLRNISLADLDPGTAKLAIGILGPALSAFGFLFILRIVMSW 107

Query: 208 YPKLPVGKFPYVIAYAPTEPLLIVTRKVIPPLGGVDVTPVVWFGLVSFLNEILLGPQGLL 267
           YPKLPV KFPYV+AYAPTEP+L+ TRKVIPPL GVDVTPVVWFGLVSFL+EIL+GPQGLL
Sbjct: 108 YPKLPVDKFPYVLAYAPTEPILVQTRKVIPPLAGVDVTPVVWFGLVSFLSEILVGPQGLL 167

Query: 268 VLLSQQ 274
           VL+SQQ
Sbjct: 168 VLVSQQ 171

[Close]

BLAST of Lag0002571 vs. ExPASy TrEMBL
Match: A0A5A7VQJ0 (Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold138G001630 PE=4 SV=1)

HSP 1 Score: 323.9 bits (829), Expect = 6.3e-85
Identity = 167/192 (86.98%), Postives = 175/192 (91.15%), Query Frame = 0


Query: 84  FPKFVDSLPCFLGQKGFKYHPQRNPNCRFQAIQCSSSLLSSFPSSKIHLSLAYANPPLKP 143
           F K +D LPCFLGQ+GFKYHPQRNPN +FQAI+CSSSLL SF SSKI  SLAY  PPLKP
Sbjct: 10  FAKCLDLLPCFLGQRGFKYHPQRNPNYKFQAIKCSSSLLGSFTSSKILPSLAYVIPPLKP 69

Query: 144 AAAYEAARTIPFALQDASIATSDFMNNVALADLDPATAKLAISFLGPFLSAFSFLFIVRI 203
           AAAYEAARTIPFALQDAS+A SDF+N++ LADLDP TAKLAISFLGP LS FSFLFI RI
Sbjct: 70  AAAYEAARTIPFALQDASMAASDFVNSMTLADLDPGTAKLAISFLGPSLSVFSFLFIARI 129

Query: 204 VMSWYPKLPVGKFPYVIAYAPTEPLLIVTRKVIPPLGGVDVTPVVWFGLVSFLNEILLGP 263
           VMSWYPKLPVGKFPYVIAYAPTEPLLI TRKVIPPLGGVDVTPVVWFGLVSFLNEILLGP
Sbjct: 130 VMSWYPKLPVGKFPYVIAYAPTEPLLIATRKVIPPLGGVDVTPVVWFGLVSFLNEILLGP 189

Query: 264 QGLLVLLSQQVS 276
           QGLLVLLSQQVS
Sbjct: 190 QGLLVLLSQQVS 201

[Close]

BLAST of Lag0002571 vs. ExPASy TrEMBL
Match: A0A5D3D3A7 (Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G00790 PE=4 SV=1)

HSP 1 Score: 322.4 bits (825), Expect = 1.8e-84
Identity = 166/192 (86.46%), Postives = 175/192 (91.15%), Query Frame = 0


Query: 84  FPKFVDSLPCFLGQKGFKYHPQRNPNCRFQAIQCSSSLLSSFPSSKIHLSLAYANPPLKP 143
           F K +D LPCFLGQ+GFKYHPQRNPN +FQAI+CSSSLL SF SSKI  SLAY  PPLKP
Sbjct: 10  FAKCLDLLPCFLGQRGFKYHPQRNPNYKFQAIKCSSSLLGSFTSSKILPSLAYVIPPLKP 69

Query: 144 AAAYEAARTIPFALQDASIATSDFMNNVALADLDPATAKLAISFLGPFLSAFSFLFIVRI 203
           AAAYEAARTIPFAL+DAS+A SDF+N++ LADLDP TAKLAISFLGP LS FSFLFI RI
Sbjct: 70  AAAYEAARTIPFALRDASMAASDFVNSMTLADLDPGTAKLAISFLGPSLSVFSFLFIARI 129

Query: 204 VMSWYPKLPVGKFPYVIAYAPTEPLLIVTRKVIPPLGGVDVTPVVWFGLVSFLNEILLGP 263
           VMSWYPKLPVGKFPYVIAYAPTEPLLI TRKVIPPLGGVDVTPVVWFGLVSFLNEILLGP
Sbjct: 130 VMSWYPKLPVGKFPYVIAYAPTEPLLIATRKVIPPLGGVDVTPVVWFGLVSFLNEILLGP 189

Query: 264 QGLLVLLSQQVS 276
           QGLLVLLSQQVS
Sbjct: 190 QGLLVLLSQQVS 201

[Close]

BLAST of Lag0002571 vs. ExPASy TrEMBL
Match: A0A0A0K9A7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G398190 PE=4 SV=1)

HSP 1 Score: 305.1 bits (780), Expect = 3.0e-79
Identity = 155/178 (87.08%), Postives = 164/178 (92.13%), Query Frame = 0


Query: 98  KGFKYHPQRNPNCRFQAIQCSSSLLSSFPSSKIHLSLAYANPPLKPAAAYEAARTIPFAL 157
           +GFKYHPQRNPNC+FQAI+CSSSLL SF SSK  LSLAY  PPLKPAAAYEAARTIPF L
Sbjct: 33  RGFKYHPQRNPNCKFQAIKCSSSLLGSFTSSKSLLSLAYVIPPLKPAAAYEAARTIPFTL 92

Query: 158 QDASIATSDFMNNVALADLDPATAKLAISFLGPFLSAFSFLFIVRIVMSWYPKLPVGKFP 217
           QDAS+A SDF+N++ LADLDP TAKLAISFLGP LS FSFLFI RIVMSWYPKLPVGKFP
Sbjct: 93  QDASMAASDFVNSMTLADLDPGTAKLAISFLGPSLSVFSFLFIARIVMSWYPKLPVGKFP 152

Query: 218 YVIAYAPTEPLLIVTRKVIPPLGGVDVTPVVWFGLVSFLNEILLGPQGLLVLLSQQVS 276
           YVIAYAPTEPLL+ TRKVIPPLGGVDVTPVVWFGL+SFLNEILLGPQGLLVLLSQQVS
Sbjct: 153 YVIAYAPTEPLLVATRKVIPPLGGVDVTPVVWFGLISFLNEILLGPQGLLVLLSQQVS 210

[Close]

BLAST of Lag0002571 vs. ExPASy TrEMBL
Match: A0A6J1GQG0 (protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111456167 PE=4 SV=1)

HSP 1 Score: 303.1 bits (775), Expect = 1.2e-78
Identity = 156/179 (87.15%), Postives = 161/179 (89.94%), Query Frame = 0


Query: 97  QKGFKYHPQRNPNCRFQAIQCSSSLLSSFPSSKIHLSLAYANPPLKPAAAYEAARTIPFA 156
           ++GF YHPQ NPNCRFQA +CSSSLL SF SSKIHL L YA PPLKP     AARTIPFA
Sbjct: 13  RRGFNYHPQSNPNCRFQAFKCSSSLLGSFTSSKIHLPLVYATPPLKP-----AARTIPFA 72

Query: 157 LQDASIATSDFMNNVALADLDPATAKLAISFLGPFLSAFSFLFIVRIVMSWYPKLPVGKF 216
           LQDAS+A SDFMNNV+LADLDP TAKLAI FLGPFLSAFSFLFI RIVMSWYPKLPVGKF
Sbjct: 73  LQDASVAASDFMNNVSLADLDPGTAKLAIGFLGPFLSAFSFLFIARIVMSWYPKLPVGKF 132

Query: 217 PYVIAYAPTEPLLIVTRKVIPPLGGVDVTPVVWFGLVSFLNEILLGPQGLLVLLSQQVS 276
           PYVIAYAPTEPLLI TRKVIPPLGGVDVTPVVWFGLVSFLNEILLGPQGLLVLLSQQVS
Sbjct: 133 PYVIAYAPTEPLLIATRKVIPPLGGVDVTPVVWFGLVSFLNEILLGPQGLLVLLSQQVS 186

[Close]

BLAST of Lag0002571 vs. ExPASy TrEMBL
Match: A0A1S3BSI7 (protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103492796 PE=4 SV=1)

HSP 1 Score: 303.1 bits (775), Expect = 1.2e-78
Identity = 157/179 (87.71%), Postives = 165/179 (92.18%), Query Frame = 0


Query: 97  QKGFKYHPQRNPNCRFQAIQCSSSLLSSFPSSKIHLSLAYANPPLKPAAAYEAARTIPFA 156
           ++GFKYHPQRNPN +FQAI+CSSSLL SF SSKI  SLAY  PPLKPAAAYEAARTIPFA
Sbjct: 14  RRGFKYHPQRNPNYKFQAIKCSSSLLGSFTSSKILPSLAYVIPPLKPAAAYEAARTIPFA 73

Query: 157 LQDASIATSDFMNNVALADLDPATAKLAISFLGPFLSAFSFLFIVRIVMSWYPKLPVGKF 216
           LQDAS+A SDF+N++ LADLDP TAKLAISFLGP LS FSFLFI RIVMSWYPKLPVGKF
Sbjct: 74  LQDASMAASDFVNSMTLADLDPGTAKLAISFLGPSLSVFSFLFIARIVMSWYPKLPVGKF 133

Query: 217 PYVIAYAPTEPLLIVTRKVIPPLGGVDVTPVVWFGLVSFLNEILLGPQGLLVLLSQQVS 276
           PYVIAYAPTEPLLI TRKVIPPLGGVDVTPVVWFGLVSFLNEILLGPQGLLVLLSQQVS
Sbjct: 134 PYVIAYAPTEPLLIATRKVIPPLGGVDVTPVVWFGLVSFLNEILLGPQGLLVLLSQQVS 192

[Close]

BLAST of Lag0002571 vs. TAIR 10
Match: AT5G36120.1 (cofactor assembly, complex C (B6F) )

HSP 1 Score: 179.9 bits (455), Expect = 2.8e-45
Identity = 95/126 (75.40%), Postives = 106/126 (84.13%), Query Frame = 0


Query: 148 EAARTIPFALQDASIATSDFMNNVALADLDPATAKLAISFLGPFLSAFSFLFIVRIVMSW 207
           EAA T     Q  SI  S+ + N++LADLDP TAKLAI  LGP LSAF FLFI+RIVMSW
Sbjct: 48  EAATTTNLIRQTNSI--SESLRNISLADLDPGTAKLAIGILGPALSAFGFLFILRIVMSW 107

Query: 208 YPKLPVGKFPYVIAYAPTEPLLIVTRKVIPPLGGVDVTPVVWFGLVSFLNEILLGPQGLL 267
           YPKLPV KFPYV+AYAPTEP+L+ TRKVIPPL GVDVTPVVWFGLVSFL+EIL+GPQGLL
Sbjct: 108 YPKLPVDKFPYVLAYAPTEPILVQTRKVIPPLAGVDVTPVVWFGLVSFLSEILVGPQGLL 167

Query: 268 VLLSQQ 274
           VL+SQQ
Sbjct: 168 VLVSQQ 171

[Close]

BLAST of Lag0002571 vs. TAIR 10
Match: AT5G21920.2 (YGGT family protein )

HSP 1 Score: 43.5 bits (101), Expect = 3.2e-04
Identity = 39/134 (29.10%), Postives = 66/134 (49.25%), Query Frame = 0


Query: 120 SLLSSFPSSKIHL-SLAYANPPLKPAAAYEAARTIPFALQDASIATSDFMNNVALADLDP 179
           SL+S+    K  L SLA  NP  + A        + FA+ +   A        A+   D 
Sbjct: 64  SLISATEKFKGFLHSLASKNPLFQEAIRLRNTTRVRFAMSNHGFA--------AVLPGDS 123

Query: 180 ATAKLAISFLGPFLSAFSFLFIVRIVMSWYPKLPVGKFPYVIAYAPT--EPLLIVTRKVI 239
               +  + L  FL+ ++ + +VR+V++W+P  P    P ++    T  +P L + R  I
Sbjct: 124 VAGLVVANGLINFLNIYNTILVVRLVLTWFPSAP----PAIVNPLSTLCDPYLNIFRGFI 183

Query: 240 PPLGGVDVTPVVWF 251
           PPLGG+D++P++ F
Sbjct: 184 PPLGGLDLSPILAF 185

[Close]

BLAST of Lag0002571 vs. TAIR 10
Match: AT5G21920.1 (YGGT family protein )

HSP 1 Score: 43.1 bits (100), Expect = 4.1e-04
Identity = 22/62 (35.48%), Postives = 40/62 (64.52%), Query Frame = 0


Query: 191 FLSAFSFLFIVRIVMSWYPKLPVGKFPYVIAYAPT--EPLLIVTRKVIPPLGGVDVTPVV 250
           FL+ ++ + +VR+V++W+P  P    P ++    T  +P L + R  IPPLGG+D++P++
Sbjct: 141 FLNIYNTILVVRLVLTWFPSAP----PAIVNPLSTLCDPYLNIFRGFIPPLGGLDLSPIL 198

[Close]

BLAST of Lag0002571 vs. TAIR 10
Match: AT4G27990.1 (YGGT family protein )

HSP 1 Score: 42.7 bits (99), Expect = 5.4e-04
Identity = 24/79 (30.38%), Postives = 45/79 (56.96%), Query Frame = 0


Query: 188 LGPFLSAFSFLFIVRIVMSWYPKLPVGKFPYVIAYAPTEPLLIVTRKVIPPL-GGVDVTP 247
           L  +L  +S + +VR+++SW+P +P  + P        +P L + R +IPP+   +DV+P
Sbjct: 140 LSKWLDIYSGVLMVRVLLSWFPNIPWDRQPLSAIRDLCDPYLNLFRNIIPPVFDTLDVSP 199

Query: 248 VVWFGLVSFLNEILLGPQG 266
           ++ F ++  L  IL   +G
Sbjct: 200 LLAFAVLGTLGSILNNSRG 218

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BLAST of Lag0002571 vs. TAIR 10
Match: AT3G07430.1 (YGGT family protein )

HSP 1 Score: 42.0 bits (97), Expect = 9.2e-04
Identity = 23/76 (30.26%), Postives = 44/76 (57.89%), Query Frame = 0


Query: 191 FLSAFSFLFIVRIVMSWYPKLPVGKFPYVIAYAPTEPLLIVTRKVIPPL-GGVDVTPVVW 250
           +L  +S + +VR+++SW+P +P  + P        +P L + R +IPP+   +DV+P++ 
Sbjct: 157 WLDIYSGVLMVRVLLSWFPNIPWERQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLA 216

Query: 251 FGLVSFLNEILLGPQG 266
           F ++  L  I+ G  G
Sbjct: 217 FAVLGTLGSIVHGSTG 232

The following BLAST results are available for this feature:

BLAST of Lag0002571 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0067975.1	1.3e-84	86.98	protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3 [Cucumis melo var. makuwa]	[more]
TYK18148.1	3.8e-84	86.46	protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3 [Cucumis melo var. makuwa]	[more]
XP_038896183.1	1.2e-82	87.63	protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic isoform X2 ...	[more]
XP_038896182.1	3.6e-82	89.89	protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic isoform X1 ...	[more]
XP_004136017.2	4.8e-79	86.59	protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic isoform X3 ...	[more]

BLAST of Lag0002571 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8RWM7	4.0e-44	75.40	Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic OS=Arabidop...	[more]

BLAST of Lag0002571 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VQJ0	6.3e-85	86.98	Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3 OS=Cucumis melo var. makuw...	[more]
A0A5D3D3A7	1.8e-84	86.46	Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3 OS=Cucumis melo var. makuw...	[more]
A0A0A0K9A7	3.0e-79	87.08	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G398190 PE=4 SV=1	[more]
A0A6J1GQG0	1.2e-78	87.15	protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic OS=Cucurbit...	[more]
A0A1S3BSI7	1.2e-78	87.71	protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic OS=Cucumis ...	[more]

BLAST of Lag0002571 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G36120.1	2.8e-45	75.40	cofactor assembly, complex C (B6F)	[more]
AT5G21920.2	3.2e-04	29.10	YGGT family protein	[more]
AT5G21920.1	4.1e-04	35.48	YGGT family protein	[more]
AT4G27990.1	5.4e-04	30.38	YGGT family protein	[more]
AT3G07430.1	9.2e-04	30.26	YGGT family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003425	CCB3/YggT	PFAM	PF02325	YGGT	coord: 191..260 e-value: 7.7E-15 score: 55.0
IPR003425	CCB3/YggT	PANTHER	PTHR33219	YLMG HOMOLOG PROTEIN 2, CHLOROPLASTIC	coord: 98..274
None	No IPR available	PANTHER	PTHR33219:SF11	PROTEIN COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, CHLOROPLASTIC	coord: 98..274

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0002571.1	Lag0002571.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane