Lag0002564 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0002564
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	indole-3-acetic acid-induced protein ARG2-like
Location	chr4: 43869461 .. 43869821 (+)
RNA-Seq Expression	Lag0002564
Synteny	Lag0002564

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTCTCTGCCGCTCTCAGCAGGTAGTTCTCTTCTTCTTGTCATTCGTTTTTCTTCGATCTCTGTCTCGGTTGGTGTGTTGTTGTTGAGGTTAATGTTTGTTTTGATCGTTGTTTGTTTAGGCGTGGTTACGCGGCGGCTTCTCAAGGCGTTGCGTCGAGTGCGGTGAAGGAGGAAGTGTTGCGGCGGCCAGGAACAGCAATCTGTTGAAGAAATCGGGAGAGGAGAAGGTTGTTGGATCGTCTGAGAAGGTTTCTTGGGTGCCGGATCCTGTCACGGGGTATTACCGACCGGAGAATCGCGCCGATGAGATCGATGTTGCCGAACTTCGTTCGATTCTTCTCAAGAACAAGAACTAA

mRNA sequence

ATGGATTCTCTGCCGCTCTCAGCAGGTAGTTCTCTTCTTCTTGTCATTCGTTTTTCTTCGATCTCTGTCTCGGCGTGGTTACGCGGCGGCTTCTCAAGGCGTTGCGTCGAGTGCGGTGAAGGAGGAAGTGTTGCGGCGGCCAGGAACAGCAATCTGTTGAAGAAATCGGGAGAGGAGAAGGTTGTTGGATCGTCTGAGAAGGTTTCTTGGGTGCCGGATCCTGTCACGGGGTATTACCGACCGGAGAATCGCGCCGATGAGATCGATGTTGCCGAACTTCGTTCGATTCTTCTCAAGAACAAGAACTAA

Coding sequence (CDS)

ATGGATTCTCTGCCGCTCTCAGCAGGTAGTTCTCTTCTTCTTGTCATTCGTTTTTCTTCGATCTCTGTCTCGGCGTGGTTACGCGGCGGCTTCTCAAGGCGTTGCGTCGAGTGCGGTGAAGGAGGAAGTGTTGCGGCGGCCAGGAACAGCAATCTGTTGAAGAAATCGGGAGAGGAGAAGGTTGTTGGATCGTCTGAGAAGGTTTCTTGGGTGCCGGATCCTGTCACGGGGTATTACCGACCGGAGAATCGCGCCGATGAGATCGATGTTGCCGAACTTCGTTCGATTCTTCTCAAGAACAAGAACTAA

Protein sequence

MDSLPLSAGSSLLLVIRFSSISVSAWLRGGFSRRCVECGEGGSVAAARNSNLLKKSGEEKVVGSSEKVSWVPDPVTGYYRPENRADEIDVAELRSILLKNKN

Homology

[Close]

BLAST of Lag0002564 vs. NCBI nr
Match: XP_038900137.1 (indole-3-acetic acid-induced protein ARG2 [Benincasa hispida])

HSP 1 Score: 124.4 bits (311), Expect = 5.6e-25
Identity = 69/97 (71.13%), Postives = 75/97 (77.32%), Query Frame = 0


Query: 18  FSSISV-SAWLRGGFSRRCVECG-----------EGGSVAAARNSNLLKKSGEEKVVGSS 77
           FS++ + SA +  GFS      G           +GGSVAAARNSNLLKKSGEEKVVGSS
Sbjct: 5   FSNVKILSALVADGFSSTLTRRGYASQGLASSLVKGGSVAAARNSNLLKKSGEEKVVGSS 64

Query: 78  EKVSWVPDPVTGYYRPENRADEIDVAELRSILLKNKN 103
           EKVSWVPDPVTGYYRPENR+DEIDVAELRSILLKNKN
Sbjct: 65  EKVSWVPDPVTGYYRPENRSDEIDVAELRSILLKNKN 101

[Close]

BLAST of Lag0002564 vs. NCBI nr
Match: XP_022991270.1 (indole-3-acetic acid-induced protein ARG2-like [Cucurbita maxima])

HSP 1 Score: 121.3 bits (303), Expect = 4.8e-24
Identity = 59/63 (93.65%), Postives = 62/63 (98.41%), Query Frame = 0


Query: 40  EGGSVAAARNSNLLKKSGEEKVVGSSEKVSWVPDPVTGYYRPENRADEIDVAELRSILLK 99
           +GGSVAAARNSNLLKKSGEEKVVGSSEKVSWVPDPVTGYYRPENRADEIDVAELRS+LL 
Sbjct: 43  KGGSVAAARNSNLLKKSGEEKVVGSSEKVSWVPDPVTGYYRPENRADEIDVAELRSVLLN 102

Query: 100 NKN 103
           N+N
Sbjct: 103 NRN 105

[Close]

BLAST of Lag0002564 vs. NCBI nr
Match: XP_023548996.1 (indole-3-acetic acid-induced protein ARG2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 121.3 bits (303), Expect = 4.8e-24
Identity = 59/63 (93.65%), Postives = 62/63 (98.41%), Query Frame = 0


Query: 40  EGGSVAAARNSNLLKKSGEEKVVGSSEKVSWVPDPVTGYYRPENRADEIDVAELRSILLK 99
           +GGSVAAARNSNLLKKSGEEKVVGSSEKVSWVPDPVTGYYRPENRADEIDVAELRS+LL 
Sbjct: 43  KGGSVAAARNSNLLKKSGEEKVVGSSEKVSWVPDPVTGYYRPENRADEIDVAELRSVLLN 102

Query: 100 NKN 103
           N+N
Sbjct: 103 NRN 105

[Close]

BLAST of Lag0002564 vs. NCBI nr
Match: KAG6575820.1 (Indole-3-acetic acid-induced protein ARG2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014358.1 Indole-3-acetic acid-induced protein ARG2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 117.5 bits (293), Expect = 6.9e-23
Identity = 58/63 (92.06%), Postives = 60/63 (95.24%), Query Frame = 0


Query: 40  EGGSVAAARNSNLLKKSGEEKVVGSSEKVSWVPDPVTGYYRPENRADEIDVAELRSILLK 99
           +GGSVAAA NSNLLKKSGEEKVVGSSEKVSWVPDPVTGYYRPENRADEIDVAELRS LL 
Sbjct: 43  KGGSVAAAMNSNLLKKSGEEKVVGSSEKVSWVPDPVTGYYRPENRADEIDVAELRSALLN 102

Query: 100 NKN 103
           N+N
Sbjct: 103 NRN 105

[Close]

BLAST of Lag0002564 vs. NCBI nr
Match: XP_022953730.1 (protein SENESCENCE-ASSOCIATED GENE 21, mitochondrial [Cucurbita moschata])

HSP 1 Score: 117.5 bits (293), Expect = 6.9e-23
Identity = 58/63 (92.06%), Postives = 60/63 (95.24%), Query Frame = 0


Query: 40  EGGSVAAARNSNLLKKSGEEKVVGSSEKVSWVPDPVTGYYRPENRADEIDVAELRSILLK 99
           +GGSVAAA NSNLLKKSGEEKVVGSSEKVSWVPDPVTGYYRPENRADEIDVAELRS LL 
Sbjct: 43  KGGSVAAAMNSNLLKKSGEEKVVGSSEKVSWVPDPVTGYYRPENRADEIDVAELRSALLN 102

Query: 100 NKN 103
           N+N
Sbjct: 103 NRN 105

[Close]

BLAST of Lag0002564 vs. ExPASy Swiss-Prot
Match: P32292 (Indole-3-acetic acid-induced protein ARG2 OS=Vigna radiata var. radiata OX=3916 GN=ARG2 PE=2 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 2.5e-12
Identity = 45/94 (47.87%), Postives = 60/94 (63.83%), Query Frame = 0


Query: 18  FSSISV-SAWLRGGFSRRCVECGEGGSVAAARNS---------NLLKKSGEEKVVGSSEK 77
           F+++ V SA +  GFS      G   + AA +++         N++ KSGEEKV G  EK
Sbjct: 5   FTNVKVLSALVADGFSNTTTRHGFAAAAAATQSATRGGASIGGNMVPKSGEEKVRG-GEK 64

Query: 78  VSWVPDPVTGYYRPENRADEIDVAELRSILLKNK 102
           VSWVPDPVTGYYRPEN  +EIDVA++R+ +L  K
Sbjct: 65  VSWVPDPVTGYYRPEN-TNEIDVADMRATVLGKK 96

[Close]

BLAST of Lag0002564 vs. ExPASy Swiss-Prot
Match: Q93WF6 (Protein SENESCENCE-ASSOCIATED GENE 21, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=SAG21 PE=2 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 8.2e-11
Identity = 35/63 (55.56%), Postives = 46/63 (73.02%), Query Frame = 0


Query: 39  GEGGSVAAARNSNLLKKSGEEKVVGSSEKVSWVPDPVTGYYRPENRADEIDVAELRSILL 98
           G  G+VA+A    ++KK G E+   S++K+SWVPDP TGYYRPE  ++EID AELR+ LL
Sbjct: 41  GRSGAVASA----VMKKKGVEE---STQKISWVPDPKTGYYRPETGSNEIDAAELRAALL 96

Query: 99  KNK 102
            NK
Sbjct: 101 NNK 96

[Close]

BLAST of Lag0002564 vs. ExPASy Swiss-Prot
Match: Q9SRX6 (Late embryogenis abundant protein 2 OS=Arabidopsis thaliana OX=3702 GN=LEA2 PE=2 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.2e-09
Identity = 39/78 (50.00%), Postives = 49/78 (62.82%), Query Frame = 0


Query: 24  SAWLRGGFSRRCVECGEGGSVAAARNSNLLKKSGEEKVVGSSEKVSWVPDPVTGYYRPEN 83
           +A  R GF+    +    GSV+ A    + K++GE     SSEK  WVPDP TGYYRPE 
Sbjct: 21  NAVFRRGFA-AAAKTALDGSVSTA---EMKKRAGE----ASSEKAPWVPDPKTGYYRPET 80

Query: 84  RADEIDVAELRSILLKNK 102
            ++EID AELR+ILL NK
Sbjct: 81  VSEEIDPAELRAILLNNK 90

[Close]

BLAST of Lag0002564 vs. ExPASy Swiss-Prot
Match: Q39084 (Late embryogenis abundant protein 41 OS=Arabidopsis thaliana OX=3702 GN=LEA41 PE=2 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 8.5e-08
Identity = 37/101 (36.63%), Postives = 52/101 (51.49%), Query Frame = 0


Query: 1   MDSLPLSAGSSLLLVIRFSSISVSAWLRGGFSRRCVECGEGGSVAAARNSNLLKKSGEEK 60
           M +  LS     L      S+S S  LR  +          G ++   ++ ++    E++
Sbjct: 1   MAARSLSGAVKSLCSAASGSLSCSIVLRRSYVATSQNVTAAG-LSKGGSTRVMVGKMEQR 60

Query: 61  VVGSSEKVSWVPDPVTGYYRPENRADEIDVAELRSILLKNK 102
            +    + +W PDPVTGYYRP NRA EID AELR +LLKNK
Sbjct: 61  GLDQEAESAWGPDPVTGYYRPSNRAAEIDPAELRELLLKNK 100

[Close]

BLAST of Lag0002564 vs. ExPASy Swiss-Prot
Match: Q39644 (Late embryogenesis abundant protein Lea5 OS=Citrus sinensis OX=2711 GN=LEA5 PE=2 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.4e-07
Identity = 25/38 (65.79%), Postives = 29/38 (76.32%), Query Frame = 0


Query: 64  SSEKVSWVPDPVTGYYRPENRADEIDVAELRSILLKNK 102
           S    +W PDP+TGYYRPENRA EID AELR +LL +K
Sbjct: 56  SGASSAWAPDPITGYYRPENRAVEIDPAELREMLLNHK 93

The following BLAST results are available for this feature:

BLAST of Lag0002564 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038900137.1	5.6e-25	71.13	indole-3-acetic acid-induced protein ARG2 [Benincasa hispida]	[more]
XP_022991270.1	4.8e-24	93.65	indole-3-acetic acid-induced protein ARG2-like [Cucurbita maxima]	[more]
XP_023548996.1	4.8e-24	93.65	indole-3-acetic acid-induced protein ARG2 [Cucurbita pepo subsp. pepo]	[more]
KAG6575820.1	6.9e-23	92.06	Indole-3-acetic acid-induced protein ARG2, partial [Cucurbita argyrosperma subsp...	[more]
XP_022953730.1	6.9e-23	92.06	protein SENESCENCE-ASSOCIATED GENE 21, mitochondrial [Cucurbita moschata]	[more]

BLAST of Lag0002564 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P32292	2.5e-12	47.87	Indole-3-acetic acid-induced protein ARG2 OS=Vigna radiata var. radiata OX=3916 ...	[more]
Q93WF6	8.2e-11	55.56	Protein SENESCENCE-ASSOCIATED GENE 21, mitochondrial OS=Arabidopsis thaliana OX=...	[more]
Q9SRX6	1.2e-09	50.00	Late embryogenis abundant protein 2 OS=Arabidopsis thaliana OX=3702 GN=LEA2 PE=2...	[more]
Q39084	8.5e-08	36.63	Late embryogenis abundant protein 41 OS=Arabidopsis thaliana OX=3702 GN=LEA41 PE...	[more]
Q39644	1.4e-07	65.79	Late embryogenesis abundant protein Lea5 OS=Citrus sinensis OX=2711 GN=LEA5 PE=2...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004926	Late embryogenesis abundant protein, LEA_3 subgroup	PFAM	PF03242	LEA_3	coord: 16..98 e-value: 2.5E-20 score: 72.9
IPR004926	Late embryogenesis abundant protein, LEA_3 subgroup	PANTHER	PTHR33509	LATE EMBRYOGENIS ABUNDANT PROTEIN 2-RELATED	coord: 19..101
None	No IPR available	PANTHER	PTHR33509:SF34	LATE EMBRYOGENIS ABUNDANT PROTEIN 41	coord: 19..101

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0002564.1	Lag0002564.1	mRNA