Lag0002525 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0002525
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Reverse transcriptase domain-containing protein
Location	chr4: 43600775 .. 43601278 (+)
RNA-Seq Expression	Lag0002525
Synteny	Lag0002525

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGCGAAAGATATTCTAAATATTCCCATTGGCAACCCCCTGCTCGAGATGAAATCATATGGGCTATGGATTCCAAAGGAGTTTTTAAGGTTAAAAGTGCATATCATCTTGCTTCGAAAATCCAACAAGCAAAGGCAGCATCTTCCTCAAGGGCGGAGGAACACACGATTTGGGAAAGACTACGGGGGCTCAACATTTTACCCTTGGAATATTGTTAAAAACATAATCCCTACCAAAAGGAATCTAATCTCAAGAGGATTAGACATTAACCCGATGTGCTCTGTGTGTAGGAAAAAAAGGGAAGATTCGGCGCATGCTATTTGGGAGAGCAAGAAGGTAAGAGCTATGTGGAATATATTATTTCCTAATCTAATGGAGGATCCTTTTCTGTTTCAGGGGTGGAACCTCTATGGAGCTTTGGTGGGAGTGGATGATGAGCAGCATTTCCTATTTCCAGATCTTTTTCACTCCCACCAAAGCTCCATAGAGGTTCCATCCTAA

mRNA sequence

ATGGATGCGAAAGATATTCTAAATATTCCCATTGGCAACCCCCTGCTCGAGATGAAATCATATGGGCTATGGATTCCAAAGGAGTTTTTAAGGTTAAAAGTGCATATCATCTTGCTTCGAAAATCCAACAAGCAAAGGCAGCATCTTCCTCAAGGGCGGAGGAACACACGATTTGGGAAAGACTACGGGGGCTCAACATTTTACCCTTGGAATATTGTTAAAAACATAATCCCTACCAAAAGGAATCTAATCTCAAGAGGATTAGACATTAACCCGATGTGCTCTGTGTGTAGGAAAAAAAGGGAAGATTCGGCGCATGCTATTTGGGAGAGCAAGAAGGTAAGAGCTATGTGGAATATATTATTTCCTAATCTAATGGAGGATCCTTTTCTGTTTCAGGGGTGGAACCTCTATGGAGCTTTGGTGGGAGTGGATGATGAGCAGCATTTCCTATTTCCAGATCTTTTTCACTCCCACCAAAGCTCCATAGAGGTTCCATCCTAA

Coding sequence (CDS)

ATGGATGCGAAAGATATTCTAAATATTCCCATTGGCAACCCCCTGCTCGAGATGAAATCATATGGGCTATGGATTCCAAAGGAGTTTTTAAGGTTAAAAGTGCATATCATCTTGCTTCGAAAATCCAACAAGCAAAGGCAGCATCTTCCTCAAGGGCGGAGGAACACACGATTTGGGAAAGACTACGGGGGCTCAACATTTTACCCTTGGAATATTGTTAAAAACATAATCCCTACCAAAAGGAATCTAATCTCAAGAGGATTAGACATTAACCCGATGTGCTCTGTGTGTAGGAAAAAAAGGGAAGATTCGGCGCATGCTATTTGGGAGAGCAAGAAGGTAAGAGCTATGTGGAATATATTATTTCCTAATCTAATGGAGGATCCTTTTCTGTTTCAGGGGTGGAACCTCTATGGAGCTTTGGTGGGAGTGGATGATGAGCAGCATTTCCTATTTCCAGATCTTTTTCACTCCCACCAAAGCTCCATAGAGGTTCCATCCTAA

Protein sequence

MDAKDILNIPIGNPLLEMKSYGLWIPKEFLRLKVHIILLRKSNKQRQHLPQGRRNTRFGKDYGGSTFYPWNIVKNIIPTKRNLISRGLDINPMCSVCRKKREDSAHAIWESKKVRAMWNILFPNLMEDPFLFQGWNLYGALVGVDDEQHFLFPDLFHSHQSSIEVPS

Homology

[Close]

BLAST of Lag0002525 vs. NCBI nr
Match: XP_022145060.1 (uncharacterized protein LOC111014578 [Momordica charantia])

HSP 1 Score: 63.5 bits (153), Expect = 1.9e-06
Identity = 24/54 (44.44%), Postives = 37/54 (68.52%), Query Frame = 0


Query: 70  WNIVKNIIPTKRNLISRGLDINPMCSVCRKKREDSAHAIWESKKVRAMWNILFP 124
           W +  + +P+ RNLI RG+D NP C VC K+ E + HA+++ K+ + +WNIL P
Sbjct: 4   WRVFNDCVPSMRNLIKRGIDPNPNCLVCGKQIETTDHALFKCKRAKEVWNILLP 57

[Close]

BLAST of Lag0002525 vs. NCBI nr
Match: KAF4367202.1 (hypothetical protein F8388_006510 [Cannabis sativa])

HSP 1 Score: 59.7 bits (143), Expect = 2.8e-05
Identity = 20/54 (37.04%), Postives = 36/54 (66.67%), Query Frame = 0


Query: 68  YPWNIVKNIIPTKRNLISRGLDINPMCSVCRKKREDSAHAIWESKKVRAMWNIL 122
           + W + +N +P K NL+ RG+ INP+C+ C +  E  +HA+W  +KV+ +W ++
Sbjct: 569 FGWKMCRNWLPAKTNLVHRGMKINPICTNCGRFEETLSHALWNCEKVKKVWKLM 622

[Close]

BLAST of Lag0002525 vs. NCBI nr
Match: KAF4391669.1 (hypothetical protein F8388_005434 [Cannabis sativa] >KAF4400672.1 hypothetical protein G4B88_023080 [Cannabis sativa])

HSP 1 Score: 59.7 bits (143), Expect = 2.8e-05
Identity = 20/54 (37.04%), Postives = 36/54 (66.67%), Query Frame = 0


Query: 68  YPWNIVKNIIPTKRNLISRGLDINPMCSVCRKKREDSAHAIWESKKVRAMWNIL 122
           + W + +N +P K NL+ RG+ INP+C+ C K  +  +HA+W  +KV+ +W ++
Sbjct: 490 FDWKMCRNWLPAKTNLVHRGMKINPICTNCDKFEKTLSHALWNCEKVKKVWKLM 543

[Close]

BLAST of Lag0002525 vs. NCBI nr
Match: KAF4385133.1 (hypothetical protein F8388_014266 [Cannabis sativa])

HSP 1 Score: 58.9 bits (141), Expect = 4.8e-05
Identity = 20/54 (37.04%), Postives = 36/54 (66.67%), Query Frame = 0


Query: 68  YPWNIVKNIIPTKRNLISRGLDINPMCSVCRKKREDSAHAIWESKKVRAMWNIL 122
           + W + +N +P K NL+ RG+ INP+C+ C +  E  +HA+W  +KV+ +W ++
Sbjct: 4   FGWKMCRNWLPAKTNLVHRGMKINPICTNCGRFDETLSHALWNCEKVKKVWKLM 57

[Close]

BLAST of Lag0002525 vs. NCBI nr
Match: KAF4391976.1 (hypothetical protein F8388_004305 [Cannabis sativa])

HSP 1 Score: 58.9 bits (141), Expect = 4.8e-05
Identity = 20/54 (37.04%), Postives = 36/54 (66.67%), Query Frame = 0


Query: 68  YPWNIVKNIIPTKRNLISRGLDINPMCSVCRKKREDSAHAIWESKKVRAMWNIL 122
           + W + +N +P K NL+ RG+ INP+C+ C +  E  +HA+W  +KV+ +W ++
Sbjct: 139 FGWKMCRNWLPAKTNLVHRGMKINPICTNCGRFDETLSHALWNCEKVKKVWKLM 192

The following BLAST results are available for this feature:

BLAST of Lag0002525 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022145060.1	1.9e-06	44.44	uncharacterized protein LOC111014578 [Momordica charantia]	[more]
KAF4367202.1	2.8e-05	37.04	hypothetical protein F8388_006510 [Cannabis sativa]	[more]
KAF4391669.1	2.8e-05	37.04	hypothetical protein F8388_005434 [Cannabis sativa] >KAF4400672.1 hypothetical p...	[more]
KAF4385133.1	4.8e-05	37.04	hypothetical protein F8388_014266 [Cannabis sativa]	[more]
KAF4391976.1	4.8e-05	37.04	hypothetical protein F8388_004305 [Cannabis sativa]	[more]

BLAST of Lag0002525 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR026960	Reverse transcriptase zinc-binding domain	PFAM	PF13966	zf-RVT	coord: 67..118 e-value: 1.8E-8 score: 34.9

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0002525.1	Lag0002525.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005488	binding