Lag0002495 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0002495
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	glutaredoxin-C11-like
Location	chr4: 43341214 .. 43341522 (-)
RNA-Seq Expression	Lag0002495
Synteny	Lag0002495

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATAGATTGAGAAGTTTGGCATCACAGAAAGCAGTAGTGATTTTTTCCAAGAGCTCATGCTACATATGCCACAGCATCCAGACACTTTTTTATGAGCTTGGTGCTAGCCCTGCAATTCACGAGCTTGACCATGAAACAAATGGGCGAGAAATTGATTGGGCTCTTAGAGGTCTAGGGTGCAACCCCTCTGTTCCAGCTGTGTTCATAGGAGGAAAGTTTATAGGCTCAGCAAAAGATGTTATTTCTCTCCATGTTAATGGGGATCTGAAACAAATGCTGATAGACGCGAAGGCCATCTGGTTGTAA

mRNA sequence

ATGGATAGATTGAGAAGTTTGGCATCACAGAAAGCAGTAGTGATTTTTTCCAAGAGCTCATGCTACATATGCCACAGCATCCAGACACTTTTTTATGAGCTTGGTGCTAGCCCTGCAATTCACGAGCTTGACCATGAAACAAATGGGCGAGAAATTGATTGGGCTCTTAGAGGTCTAGGGTGCAACCCCTCTGTTCCAGCTGTGTTCATAGGAGGAAAGTTTATAGGCTCAGCAAAAGATGTTATTTCTCTCCATGTTAATGGGGATCTGAAACAAATGCTGATAGACGCGAAGGCCATCTGGTTGTAA

Coding sequence (CDS)

ATGGATAGATTGAGAAGTTTGGCATCACAGAAAGCAGTAGTGATTTTTTCCAAGAGCTCATGCTACATATGCCACAGCATCCAGACACTTTTTTATGAGCTTGGTGCTAGCCCTGCAATTCACGAGCTTGACCATGAAACAAATGGGCGAGAAATTGATTGGGCTCTTAGAGGTCTAGGGTGCAACCCCTCTGTTCCAGCTGTGTTCATAGGAGGAAAGTTTATAGGCTCAGCAAAAGATGTTATTTCTCTCCATGTTAATGGGGATCTGAAACAAATGCTGATAGACGCGAAGGCCATCTGGTTGTAA

Protein sequence

MDRLRSLASQKAVVIFSKSSCYICHSIQTLFYELGASPAIHELDHETNGREIDWALRGLGCNPSVPAVFIGGKFIGSAKDVISLHVNGDLKQMLIDAKAIWL

Homology

[Close]

BLAST of Lag0002495 vs. NCBI nr
Match: XP_022954101.1 (glutaredoxin-C11-like [Cucurbita moschata] >XP_022992474.1 glutaredoxin-C11-like isoform X2 [Cucurbita maxima] >XP_023549403.1 glutaredoxin-C11-like [Cucurbita pepo subsp. pepo] >KAG6575856.1 Glutaredoxin-C11, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014392.1 Glutaredoxin-C11, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 207.6 bits (527), Expect = 5.1e-50
Identity = 100/102 (98.04%), Postives = 101/102 (99.02%), Query Frame = 0


Query: 1   MDRLRSLASQKAVVIFSKSSCYICHSIQTLFYELGASPAIHELDHETNGREIDWALRGLG 60
           MDRLR+LASQKAVVIFSKSSCYICHSIQTLFYELGASPAIHELDHE NGREIDWALRGLG
Sbjct: 1   MDRLRNLASQKAVVIFSKSSCYICHSIQTLFYELGASPAIHELDHEANGREIDWALRGLG 60

Query: 61  CNPSVPAVFIGGKFIGSAKDVISLHVNGDLKQMLIDAKAIWL 103
           CNPSVPAVFIGGKFIGSAKDVISLHVNGDLKQMLIDAKAIWL
Sbjct: 61  CNPSVPAVFIGGKFIGSAKDVISLHVNGDLKQMLIDAKAIWL 102

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BLAST of Lag0002495 vs. NCBI nr
Match: XP_038876720.1 (glutaredoxin-C11 [Benincasa hispida])

HSP 1 Score: 206.5 bits (524), Expect = 1.1e-49
Identity = 99/102 (97.06%), Postives = 101/102 (99.02%), Query Frame = 0


Query: 1   MDRLRSLASQKAVVIFSKSSCYICHSIQTLFYELGASPAIHELDHETNGREIDWALRGLG 60
           MDRLR+LASQKAVVIFSKSSCYICHSIQTLFYELGASPAIHELDH+ NGREIDWALRGLG
Sbjct: 1   MDRLRNLASQKAVVIFSKSSCYICHSIQTLFYELGASPAIHELDHDANGREIDWALRGLG 60

Query: 61  CNPSVPAVFIGGKFIGSAKDVISLHVNGDLKQMLIDAKAIWL 103
           CNPSVPAVFIGGKFIGSAKDVISLHVNGDLKQMLIDAKAIWL
Sbjct: 61  CNPSVPAVFIGGKFIGSAKDVISLHVNGDLKQMLIDAKAIWL 102

[Close]

BLAST of Lag0002495 vs. NCBI nr
Match: XP_008451630.1 (PREDICTED: glutaredoxin-C11 [Cucumis melo] >XP_031744239.1 glutaredoxin-C11 [Cucumis sativus] >KAA0068043.1 glutaredoxin-C11-like [Cucumis melo var. makuwa] >TYK18085.1 glutaredoxin-C11-like [Cucumis melo var. makuwa])

HSP 1 Score: 206.1 bits (523), Expect = 1.5e-49
Identity = 98/102 (96.08%), Postives = 101/102 (99.02%), Query Frame = 0


Query: 1   MDRLRSLASQKAVVIFSKSSCYICHSIQTLFYELGASPAIHELDHETNGREIDWALRGLG 60
           MDRLR+LASQKAVVIFSKSSCYICHSIQTLFYELGASPA+HELDH+ NGREIDWALRGLG
Sbjct: 1   MDRLRNLASQKAVVIFSKSSCYICHSIQTLFYELGASPAVHELDHDANGREIDWALRGLG 60

Query: 61  CNPSVPAVFIGGKFIGSAKDVISLHVNGDLKQMLIDAKAIWL 103
           CNPSVPAVFIGGKFIGSAKDVISLHVNGDLKQMLIDAKAIWL
Sbjct: 61  CNPSVPAVFIGGKFIGSAKDVISLHVNGDLKQMLIDAKAIWL 102

[Close]

BLAST of Lag0002495 vs. NCBI nr
Match: KAE8646327.1 (hypothetical protein Csa_015602 [Cucumis sativus])

HSP 1 Score: 204.9 bits (520), Expect = 3.3e-49
Identity = 97/101 (96.04%), Postives = 100/101 (99.01%), Query Frame = 0


Query: 1   MDRLRSLASQKAVVIFSKSSCYICHSIQTLFYELGASPAIHELDHETNGREIDWALRGLG 60
           MDRLR+LASQKAVVIFSKSSCYICHSIQTLFYELGASPA+HELDH+ NGREIDWALRGLG
Sbjct: 1   MDRLRNLASQKAVVIFSKSSCYICHSIQTLFYELGASPAVHELDHDANGREIDWALRGLG 60

Query: 61  CNPSVPAVFIGGKFIGSAKDVISLHVNGDLKQMLIDAKAIW 102
           CNPSVPAVFIGGKFIGSAKDVISLHVNGDLKQMLIDAKAIW
Sbjct: 61  CNPSVPAVFIGGKFIGSAKDVISLHVNGDLKQMLIDAKAIW 101

[Close]

BLAST of Lag0002495 vs. NCBI nr
Match: XP_022146613.1 (glutaredoxin-C11 [Momordica charantia])

HSP 1 Score: 200.7 bits (509), Expect = 6.2e-48
Identity = 95/102 (93.14%), Postives = 99/102 (97.06%), Query Frame = 0


Query: 1   MDRLRSLASQKAVVIFSKSSCYICHSIQTLFYELGASPAIHELDHETNGREIDWALRGLG 60
           MD LR+LASQKAVVIFSKSSCYICHS+QTLFYELG SPAIHELDHE NGREIDWALRGLG
Sbjct: 1   MDTLRNLASQKAVVIFSKSSCYICHSVQTLFYELGXSPAIHELDHEANGREIDWALRGLG 60

Query: 61  CNPSVPAVFIGGKFIGSAKDVISLHVNGDLKQMLIDAKAIWL 103
           CNPSVPAVFIGGKFIG++KDVISLHVNGDLKQMLIDAKAIWL
Sbjct: 61  CNPSVPAVFIGGKFIGTSKDVISLHVNGDLKQMLIDAKAIWL 102

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BLAST of Lag0002495 vs. ExPASy Swiss-Prot
Match: Q9LYC6 (Glutaredoxin-C11 OS=Arabidopsis thaliana OX=3702 GN=GRXC11 PE=3 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 6.7e-37
Identity = 74/103 (71.84%), Postives = 90/103 (87.38%), Query Frame = 0


Query: 1   MDRLRSLASQKAVVIFSKSSCYICHSIQTLFYELGASPAIHELDHETNGREIDWALRGLG 60
           M+R+R L+S+KA VIF+KSSC +CHSI+TLFYELGASPAIHELD +  GRE++ ALR LG
Sbjct: 1   MERIRDLSSKKAAVIFTKSSCCMCHSIKTLFYELGASPAIHELDKDPEGREMERALRALG 60

Query: 61  -CNPSVPAVFIGGKFIGSAKDVISLHVNGDLKQMLIDAKAIWL 103
             NP+VPAVF+GG++IGSAKD+IS HV+G LKQML DAKAIWL
Sbjct: 61  SSNPAVPAVFVGGRYIGSAKDIISFHVDGSLKQMLKDAKAIWL 103

[Close]

BLAST of Lag0002495 vs. ExPASy Swiss-Prot
Match: O82254 (Putative glutaredoxin-C12 OS=Arabidopsis thaliana OX=3702 GN=GRXC12 PE=3 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 2.0e-33
Identity = 69/103 (66.99%), Postives = 86/103 (83.50%), Query Frame = 0


Query: 1   MDRLRSLASQKAVVIFSKSSCYICHSIQTLFYELGASPAIHELDHETNGREIDWAL-RGL 60
           M+R+R LAS+KA VIF+KSSC +CHSI+TLFYELGASPAIHELD +  G +++ AL R  
Sbjct: 1   MERVRDLASEKAAVIFTKSSCCMCHSIKTLFYELGASPAIHELDKDPQGPDMERALFRVF 60

Query: 61  GCNPSVPAVFIGGKFIGSAKDVISLHVNGDLKQMLIDAKAIWL 103
           G NP+VPAVF+GG+++GSAKDVIS HV+G LKQML  + AIWL
Sbjct: 61  GSNPAVPAVFVGGRYVGSAKDVISFHVDGSLKQMLKASNAIWL 103

[Close]

BLAST of Lag0002495 vs. ExPASy Swiss-Prot
Match: Q9LIF1 (Monothiol glutaredoxin-S10 OS=Arabidopsis thaliana OX=3702 GN=GRXS10 PE=3 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 6.0e-30
Identity = 60/102 (58.82%), Postives = 82/102 (80.39%), Query Frame = 0


Query: 1   MDRLRSLASQKAVVIFSKSSCYICHSIQTLFYELGASPAIHELDHETNGREIDWALRGLG 60
           MD +  LASQ+AVVIFSKS+C + H+I+ LFYE G SPAI E+D +  G++I+WAL  LG
Sbjct: 1   MDVVARLASQRAVVIFSKSTCCMSHAIKRLFYEQGVSPAIVEIDQDMYGKDIEWALARLG 60

Query: 61  CNPSVPAVFIGGKFIGSAKDVISLHVNGDLKQMLIDAKAIWL 103
           C+P+VPAVF+GGKF+G+A  V++LH+NG LK +L +A A+WL
Sbjct: 61  CSPTVPAVFVGGKFVGTANTVMTLHLNGSLKILLKEAGALWL 102

[Close]

BLAST of Lag0002495 vs. ExPASy Swiss-Prot
Match: O23421 (Monothiol glutaredoxin-S3 OS=Arabidopsis thaliana OX=3702 GN=GRXS3 PE=3 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 2.0e-25
Identity = 54/102 (52.94%), Postives = 76/102 (74.51%), Query Frame = 0


Query: 1   MDRLRSLASQKAVVIFSKSSCYICHSIQTLFYELGASPAIHELDHETNGREIDWALRGLG 60
           M+ L+ + S+K+VVIFSK+SC + H+I+TLF +LG +P I+ELD  + G+EI+ AL  LG
Sbjct: 1   MENLQKMISEKSVVIFSKNSCCMSHTIKTLFLDLGVNPTIYELDEISRGKEIEHALAQLG 60

Query: 61  CNPSVPAVFIGGKFIGSAKDVISLHVNGDLKQMLIDAKAIWL 103
           C+P+VP VFIGG+ +G A  V+SLH+N  L  ML  A A+WL
Sbjct: 61  CSPTVPVVFIGGQLVGGANQVMSLHLNRSLVPMLKRAGALWL 102

[Close]

BLAST of Lag0002495 vs. ExPASy Swiss-Prot
Match: O23419 (Monothiol glutaredoxin-S4 OS=Arabidopsis thaliana OX=3702 GN=GRXS4 PE=3 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 4.5e-25
Identity = 53/102 (51.96%), Postives = 74/102 (72.55%), Query Frame = 0


Query: 1   MDRLRSLASQKAVVIFSKSSCYICHSIQTLFYELGASPAIHELDHETNGREIDWALRGLG 60
           MD+L+ + S+K+VVIFSK+SC + H+I+TLF + G +P I+ELD    G+EI+ AL  LG
Sbjct: 1   MDKLQKMISEKSVVIFSKNSCCMSHTIKTLFIDFGVNPTIYELDEINRGKEIEQALAQLG 60

Query: 61  CNPSVPAVFIGGKFIGSAKDVISLHVNGDLKQMLIDAKAIWL 103
           C+P+VP VFIGG+ +G A  V+SLH+N  L  ML    A+WL
Sbjct: 61  CSPTVPVVFIGGQLVGGANQVMSLHLNRSLVPMLKRVGALWL 102

The following BLAST results are available for this feature:

BLAST of Lag0002495 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022954101.1	5.1e-50	98.04	glutaredoxin-C11-like [Cucurbita moschata] >XP_022992474.1 glutaredoxin-C11-like...	[more]
XP_038876720.1	1.1e-49	97.06	glutaredoxin-C11 [Benincasa hispida]	[more]
XP_008451630.1	1.5e-49	96.08	PREDICTED: glutaredoxin-C11 [Cucumis melo] >XP_031744239.1 glutaredoxin-C11 [Cuc...	[more]
KAE8646327.1	3.3e-49	96.04	hypothetical protein Csa_015602 [Cucumis sativus]	[more]
XP_022146613.1	6.2e-48	93.14	glutaredoxin-C11 [Momordica charantia]	[more]

BLAST of Lag0002495 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LYC6	6.7e-37	71.84	Glutaredoxin-C11 OS=Arabidopsis thaliana OX=3702 GN=GRXC11 PE=3 SV=1	[more]
O82254	2.0e-33	66.99	Putative glutaredoxin-C12 OS=Arabidopsis thaliana OX=3702 GN=GRXC12 PE=3 SV=1	[more]
Q9LIF1	6.0e-30	58.82	Monothiol glutaredoxin-S10 OS=Arabidopsis thaliana OX=3702 GN=GRXS10 PE=3 SV=1	[more]
O23421	2.0e-25	52.94	Monothiol glutaredoxin-S3 OS=Arabidopsis thaliana OX=3702 GN=GRXS3 PE=3 SV=1	[more]
O23419	4.5e-25	51.96	Monothiol glutaredoxin-S4 OS=Arabidopsis thaliana OX=3702 GN=GRXS4 PE=3 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014025	Glutaredoxin subgroup	PRINTS	PR00160	GLUTAREDOXIN	coord: 72..85 score: 31.85 coord: 13..31 score: 35.31 coord: 58..71 score: 34.23
IPR002109	Glutaredoxin	PFAM	PF00462	Glutaredoxin	coord: 13..75 e-value: 1.7E-9 score: 37.7
None	No IPR available	GENE3D	3.40.30.10	Glutaredoxin	coord: 1..101 e-value: 1.5E-25 score: 91.1
None	No IPR available	PANTHER	PTHR10168:SF202	GLUTAREDOXIN-C1 PROTEIN	coord: 1..101
None	No IPR available	PROSITE	PS51354	GLUTAREDOXIN_2	coord: 1..101 score: 19.800169
None	No IPR available	CDD	cd03419	GRX_GRXh_1_2_like	coord: 12..93 e-value: 1.3769E-35 score: 114.559
IPR011905	Glutaredoxin-like, plant II	TIGRFAM	TIGR02189	TIGR02189	coord: 5..102 e-value: 5.1E-38 score: 127.0
IPR011905	Glutaredoxin-like, plant II	PANTHER	PTHR10168	GLUTAREDOXIN	coord: 1..101
IPR036249	Thioredoxin-like superfamily	SUPERFAMILY	52833	Thioredoxin-like	coord: 1..101

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0002495.1	Lag0002495.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0097573	glutathione oxidoreductase activity