Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exon CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTCTCAACTCCTCTCTTCTTCAACTTCCATCCTCACCATTTTGCCCATAGGGAAGGTAACCACATTCAAGATTTTTCATCTTACTTGCTCTTCGAGGCGACCGGCGACTCGGAGGCCGACTCCTCGGTCGACTCCGGGGGCTCGGTCGCCGCTCAAAACTCGACGGAGTTCAACGATGCCGAATCTTGCACCGATGACACTCCTGCCATGTTTGATGAATTTGTTGGAGATGAAAATGAAGATGAAGAAGAAGAAGAAGAAGAGATGCTTGAAAATGATGAGGTAGTTGAAAGCAAGCCAATTGGATTCACAACAAAGTCAAGTGCTTCTATTGATTCAACTAAGGAGTTCAAAATGCTGAATGAGGTGGACAAAAACAAGTTGTTTTGGGAGACTTGTTTGGCATCATAG mRNA sequence
ATGCTCTCAACTCCTCTCTTCTTCAACTTCCATCCTCACCATTTTGCCCATAGGGAAGGTAACCACATTCAAGATTTTTCATCTTACTTGCTCTTCGAGGCGACCGGCGACTCGGAGGCCGACTCCTCGGTCGACTCCGGGGGCTCGGTCGCCGCTCAAAACTCGACGGAGTTCAACGATGCCGAATCTTGCACCGATGACACTCCTGCCATGTTTGATGAATTTGTTGGAGATGAAAATGAAGATGAAGAAGAAGAAGAAGAAGAGATGCTTGAAAATGATGAGGTAGTTGAAAGCAAGCCAATTGGATTCACAACAAAGTCAAGTGCTTCTATTGATTCAACTAAGGAGTTCAAAATGCTGAATGAGGTGGACAAAAACAAGTTGTTTTGGGAGACTTGTTTGGCATCATAG Coding sequence (CDS)
ATGCTCTCAACTCCTCTCTTCTTCAACTTCCATCCTCACCATTTTGCCCATAGGGAAGGTAACCACATTCAAGATTTTTCATCTTACTTGCTCTTCGAGGCGACCGGCGACTCGGAGGCCGACTCCTCGGTCGACTCCGGGGGCTCGGTCGCCGCTCAAAACTCGACGGAGTTCAACGATGCCGAATCTTGCACCGATGACACTCCTGCCATGTTTGATGAATTTGTTGGAGATGAAAATGAAGATGAAGAAGAAGAAGAAGAAGAGATGCTTGAAAATGATGAGGTAGTTGAAAGCAAGCCAATTGGATTCACAACAAAGTCAAGTGCTTCTATTGATTCAACTAAGGAGTTCAAAATGCTGAATGAGGTGGACAAAAACAAGTTGTTTTGGGAGACTTGTTTGGCATCATAG Protein sequence
MLSTPLFFNFHPHHFAHREGNHIQDFSSYLLFEATGDSEADSSVDSGGSVAAQNSTEFNDAESCTDDTPAMFDEFVGDENEDEEEEEEEMLENDEVVESKPIGFTTKSSASIDSTKEFKMLNEVDKNKLFWETCLAS
Homology
BLAST of Lag0002473 vs. NCBI nr
Match:
XP_038896353.1 (uncharacterized protein LOC120084618 [Benincasa hispida])
HSP 1 Score: 190.3 bits (482), Expect = 1.1e-44
Identity = 107/139 (76.98%), Postives = 118/139 (84.89%), Query Frame = 0
Query: 1 MLSTPLFFNFHPHHFAHREGNHIQDFSSYLLFEATGDSEADSSVDSGGSVAAQNSTEFND 60 MLSTPLFFNF+PH FAH++GNHI+D SSY L EATGDSE DSSVD GGSVA STEFND Sbjct: 1 MLSTPLFFNFYPHPFAHKQGNHIEDISSYFLLEATGDSEIDSSVDLGGSVA---STEFND 60 Query: 61 AESCTDDTPAMFDEFVGDENEDEEEEEEEMLEN--DEVVESKPIGFTTKSSASIDSTKEF 120 AESCTDDTP + G + E E+E+EEEM+EN DEVVESK IGFTTKS+ASIDSTKEF Sbjct: 61 AESCTDDTPTICTNEFG-KYEYEDEDEEEMVENDYDEVVESKAIGFTTKSNASIDSTKEF 120 Query: 121 KMLNEVDKNKLFWETCLAS 138 KMLNEVDKN+LFWETCLAS Sbjct: 121 KMLNEVDKNRLFWETCLAS 135
BLAST of Lag0002473 vs. NCBI nr
Match:
XP_022991734.1 (uncharacterized protein LOC111488264 [Cucurbita maxima])
HSP 1 Score: 176.8 bits (447), Expect = 1.3e-40
Identity = 99/137 (72.26%), Postives = 112/137 (81.75%), Query Frame = 0
Query: 1 MLSTPLFFNFHPHHFAHREGNHIQDFSSYLLFEATGDSEADSSVDSGGSVAAQNSTEFND 60 MLSTP FFNFHPH F GNHI+DFSS+LLFEATGDSEADS V G S S EFND Sbjct: 1 MLSTPFFFNFHPHQF----GNHIEDFSSHLLFEATGDSEADSLVGHGSSTV---SVEFND 60 Query: 61 AESCTDDTPAMFDEFVGDENEDEEEEEEEMLENDEVVESKPIGFTTKSSASIDSTKEFKM 120 AESCTDDTPAM +EF EN+D++++++E ENDE VESKPIGF T+SSASIDS +EFKM Sbjct: 61 AESCTDDTPAMCNEFKTYENDDDDDDDDE--ENDEEVESKPIGFMTESSASIDSAEEFKM 120 Query: 121 LNEVDKNKLFWETCLAS 138 LNEVDKN+LFWETCLAS Sbjct: 121 LNEVDKNRLFWETCLAS 128
BLAST of Lag0002473 vs. NCBI nr
Match:
XP_022960478.1 (uncharacterized protein LOC111461201 [Cucurbita moschata])
HSP 1 Score: 171.8 bits (434), Expect = 4.1e-39
Identity = 96/136 (70.59%), Postives = 109/136 (80.15%), Query Frame = 0
Query: 6 LFFNFHPHHFAHREGNHIQDFSSYLLFEATGDSEADSSVDSGGSVAAQNSTEFNDAESCT 65 + FNFHPH+FA +HI DFSSYLLFEA+GDSE DS D GS AA N EF+DAESCT Sbjct: 1 MLFNFHPHYFAR---DHIDDFSSYLLFEASGDSEVDSLADLEGSTAALNLVEFDDAESCT 60 Query: 66 DDTPAMFDEFVGDENEDE----EEEEEEMLENDEVVESKPIGFTTKSSASIDSTKEFKML 125 DDT ++DEF+ DENE E E+E+EEM END VVESK IGFTT SSASIDSTKEFKML Sbjct: 61 DDTLDLYDEFLRDENESEAEEDEDEDEEMFENDGVVESKAIGFTTSSSASIDSTKEFKML 120 Query: 126 NEVDKNKLFWETCLAS 138 N+V+KN+LFWETCLAS Sbjct: 121 NDVEKNRLFWETCLAS 133
BLAST of Lag0002473 vs. NCBI nr
Match:
XP_008451422.1 (PREDICTED: glutamic acid-rich protein [Cucumis melo])
HSP 1 Score: 171.0 bits (432), Expect = 7.0e-39
Identity = 99/151 (65.56%), Postives = 117/151 (77.48%), Query Frame = 0
Query: 1 MLST-PLFFNFHPHHFAHREGNHIQDFSSYLLFEATGDSEADSSVDSGGSVAAQNSTEFN 60 MLST PLFFNF+PHHF H +GNHI+D SSY LFEATGDSEADSSVD S +A ++TEFN Sbjct: 1 MLSTSPLFFNFYPHHFVHNQGNHIEDISSYFLFEATGDSEADSSVDLESSSSA-STTEFN 60 Query: 61 DAESCTDDTPAMFDEFVGDENEDEEEEEEEMLEND------------EVVESKPIGFTTK 120 DAESCTDDTP M ++++D++ + EEM+END EVVESK IGF+ K Sbjct: 61 DAESCTDDTPTMLCNNENEDDDDDDGDGEEMVENDDDDHDDEDEEEEEVVESKAIGFSIK 120 Query: 121 SSASIDSTK-EFKMLNEVDKNKLFWETCLAS 138 S+ASIDSTK +FKMLNEVDKN+LFWETCLAS Sbjct: 121 SNASIDSTKDDFKMLNEVDKNRLFWETCLAS 150
BLAST of Lag0002473 vs. NCBI nr
Match:
KAA0057545.1 (glutamic acid-rich protein [Cucumis melo var. makuwa])
HSP 1 Score: 170.6 bits (431), Expect = 9.2e-39
Identity = 102/151 (67.55%), Postives = 118/151 (78.15%), Query Frame = 0
Query: 1 MLST-PLFFNFHPHHFAHREGNHIQDFSSYLLFEATGDSEADSSVDSGGSVAAQNSTEFN 60 MLST PLFFNF+PHHF H +GNHI+D SSY LFEATGDSEADSSVD S +A ++TEFN Sbjct: 1 MLSTSPLFFNFYPHHFVHNQGNHIEDISSYFLFEATGDSEADSSVDLESSSSA-STTEFN 60 Query: 61 DAESCTDDTPAMFDEFVGDENEDEEE--EEEEMLEND----------EVVESKPIGFTTK 120 DAESCTDDTP M +ENED+++ + EEM+END EVVESK IGF+ K Sbjct: 61 DAESCTDDTPTM---LCNNENEDDDDDGDGEEMVENDDDDHDNEEEEEVVESKAIGFSIK 120 Query: 121 SSASIDSTK-EFKMLNEVDKNKLFWETCLAS 138 S+ASIDSTK +FKMLNEVDKN+LFWETCLAS Sbjct: 121 SNASIDSTKDDFKMLNEVDKNRLFWETCLAS 147
The following BLAST results are available for this feature:
Match Name E-value Identity Description
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
A T G C T C T C A A C T C C T C T C T T C T T C A A C T T C C A T C C T C A C C A T T T T G C C C A T A G G G A A G G T A A C C A C A T T C A A G A T T T T T C A T C T T A C T T G C T C T T C G A G G C G A C C G G C G A C T C G G A G G C C G A C T C C T C G G T C G A C T C C G G G G G C T C G G T C G C C G C T C A A A A C T C G A C G G A G T T C A A C G A T G C C G A A T C T T G C A C C G A T G A C A C T C C T G C C A T G T T T G A T G A A T T T G T T G G A G A T G A A A A T G A A G A T G A A G A A G A A G A A G A A G A A G A G A T G C T T G A A A A T G A T G A G G T A G T T G A A A G C A A G C C A A T T G G A T T C A C A A C A A A G T C A A G T G C T T C T A T T G A T T C A A C T A A G G A G T T C A A A A T G C T G A A T G A G G T G G A C A A A A A C A A G T T G T T T T G G G A G A C T T G T T T G G C A T C A T A G 50 100 150 200 250 300 350 400 Score = Score = Score = Score = Score = Score = Score = Sequence Coil mobidb-lite mobidb-lite mobidb-lite mobidb-lite PTHR35726:SF4 PTHR35726
IPR Term IPR Description Source Source Term Source Description Alignment
None No IPR available COILS Coil Coil coord: 135..137
None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 42..63
None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 79..102
None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 42..67
None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 79..94
None No IPR available PANTHER PTHR35726:SF4 GLUTAMIC ACID-RICH PROTEIN-LIKE coord: 19..137
None No IPR available PANTHER PTHR35726 GLUTAMIC ACID-RICH PROTEIN-LIKE coord: 19..137
Relationships
The following mRNA feature(s) are a part of this gene: