Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTTCCACCGATGCTCCGGCGAAGGGCGGCAGGGGCAGGAAATCCGCCTCCAAGTCCGTCTCTAGGTCTCACAAGGCCGGTCTCCAATTCCCCGTCGGCCGTATCGCCAGGTACCTCAAGAAGGGTCGTTATGCTCAGCGCGTCGGTTCCGGCTCCCCTGTCTACCTGTCAGCCGTCCTCGAATACCTCGCCGCTGAGGTTCGTAAATCGTAATCAGTAATCTTTCTTCGAGTTCAATTTCTTCAGTTCTCAGTGTTCTGATTGTGTAATTCTGCTTTTCGTTTAGGTTTTGGAGTTGGCCGGCAATGCTGCGAGAGACAACAAGAAGAACAGAATCATCCCGAGGCATATTCAGCTTGCGGTGAGGAACGATGAGGAATTGAGCAAGCTCTTGGGATCGGTTACGATCGCCAGTGGAGGAGTGATGCCTAAGATTCATCAGTCTCTTTTGCCGAAGAAGGCCGGGAGCGCGAAGGACAAGGCCGAGATCGGATCGGCGTCTCAAGAATTTTAG
mRNA sequence
ATGAGTTCCACCGATGCTCCGGCGAAGGGCGGCAGGGGCAGGAAATCCGCCTCCAAGTCCGTCTCTAGGTCTCACAAGGCCGGTCTCCAATTCCCCGTCGGCCGTATCGCCAGGTACCTCAAGAAGGGTCGTTATGCTCAGCGCGTCGGTTCCGGCTCCCCTGTCTACCTGTCAGCCGTCCTCGAATACCTCGCCGCTGAGGTTTTGGAGTTGGCCGGCAATGCTGCGAGAGACAACAAGAAGAACAGAATCATCCCGAGGCATATTCAGCTTGCGGTGAGGAACGATGAGGAATTGAGCAAGCTCTTGGGATCGGTTACGATCGCCAGTGGAGGAGTGATGCCTAAGATTCATCAGTCTCTTTTGCCGAAGAAGGCCGGGAGCGCGAAGGACAAGGCCGAGATCGGATCGGCGTCTCAAGAATTTTAG
Coding sequence (CDS)
ATGAGTTCCACCGATGCTCCGGCGAAGGGCGGCAGGGGCAGGAAATCCGCCTCCAAGTCCGTCTCTAGGTCTCACAAGGCCGGTCTCCAATTCCCCGTCGGCCGTATCGCCAGGTACCTCAAGAAGGGTCGTTATGCTCAGCGCGTCGGTTCCGGCTCCCCTGTCTACCTGTCAGCCGTCCTCGAATACCTCGCCGCTGAGGTTTTGGAGTTGGCCGGCAATGCTGCGAGAGACAACAAGAAGAACAGAATCATCCCGAGGCATATTCAGCTTGCGGTGAGGAACGATGAGGAATTGAGCAAGCTCTTGGGATCGGTTACGATCGCCAGTGGAGGAGTGATGCCTAAGATTCATCAGTCTCTTTTGCCGAAGAAGGCCGGGAGCGCGAAGGACAAGGCCGAGATCGGATCGGCGTCTCAAGAATTTTAG
Protein sequence
MSSTDAPAKGGRGRKSASKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAVLEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQSLLPKKAGSAKDKAEIGSASQEF
Homology
BLAST of Lag0002467 vs. NCBI nr
Match:
XP_038896926.1 (histone H2AX-like [Benincasa hispida])
HSP 1 Score: 261.2 bits (666), Expect = 5.4e-66
Identity = 136/142 (95.77%), Postives = 141/142 (99.30%), Query Frame = 0
Query: 1 MSSTDAPAKGGRGRKSASKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV 60
MSSTD PAKGGRGRK+++KSVSRSHKAGLQFPVGR+ARYLKKGRYAQRVGSGSPVYLSAV
Sbjct: 1 MSSTDIPAKGGRGRKASTKSVSRSHKAGLQFPVGRVARYLKKGRYAQRVGSGSPVYLSAV 60
Query: 61 LEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQS 120
LEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQS
Sbjct: 61 LEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQS 120
Query: 121 LLPKKAGSAKDKAEIGSASQEF 143
LLPKKAG+AKDKAEIGSASQEF
Sbjct: 121 LLPKKAGNAKDKAEIGSASQEF 142
BLAST of Lag0002467 vs. NCBI nr
Match:
KAG6575875.1 (Histone H2AX, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 259.6 bits (662), Expect = 1.6e-65
Identity = 136/142 (95.77%), Postives = 140/142 (98.59%), Query Frame = 0
Query: 1 MSSTDAPAKGGRGRKSASKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV 60
MSSTD P KGGRG+KSA+KSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV
Sbjct: 1 MSSTDVPTKGGRGKKSAAKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV 60
Query: 61 LEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQS 120
LEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQS
Sbjct: 61 LEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQS 120
Query: 121 LLPKKAGSAKDKAEIGSASQEF 143
LLPKKAG+AK+KAEIGSASQEF
Sbjct: 121 LLPKKAGNAKNKAEIGSASQEF 142
BLAST of Lag0002467 vs. NCBI nr
Match:
XP_023548483.1 (histone H2AX-like [Cucurbita pepo subsp. pepo] >XP_023548484.1 histone H2AX-like [Cucurbita pepo subsp. pepo])
HSP 1 Score: 258.8 bits (660), Expect = 2.7e-65
Identity = 135/142 (95.07%), Postives = 139/142 (97.89%), Query Frame = 0
Query: 1 MSSTDAPAKGGRGRKSASKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV 60
MSSTD P KGGRG+KSA+K+VSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV
Sbjct: 1 MSSTDVPTKGGRGKKSAAKAVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV 60
Query: 61 LEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQS 120
LEYL AEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQS
Sbjct: 61 LEYLVAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQS 120
Query: 121 LLPKKAGSAKDKAEIGSASQEF 143
LLPKKAG+AKDKAEIGSASQEF
Sbjct: 121 LLPKKAGNAKDKAEIGSASQEF 142
BLAST of Lag0002467 vs. NCBI nr
Match:
XP_022953582.1 (histone H2AX-like [Cucurbita moschata])
HSP 1 Score: 257.3 bits (656), Expect = 7.7e-65
Identity = 135/142 (95.07%), Postives = 138/142 (97.18%), Query Frame = 0
Query: 1 MSSTDAPAKGGRGRKSASKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV 60
MSS D P KGGRG+KS +KSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV
Sbjct: 11 MSSNDVPTKGGRGKKSDAKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV 70
Query: 61 LEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQS 120
LEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQS
Sbjct: 71 LEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQS 130
Query: 121 LLPKKAGSAKDKAEIGSASQEF 143
LLPKKAG+AKDKAEIGSASQEF
Sbjct: 131 LLPKKAGNAKDKAEIGSASQEF 152
BLAST of Lag0002467 vs. NCBI nr
Match:
KAG7025548.1 (hypothetical protein SDJN02_12044 [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 256.5 bits (654), Expect = 1.3e-64
Identity = 134/142 (94.37%), Postives = 138/142 (97.18%), Query Frame = 0
Query: 1 MSSTDAPAKGGRGRKSASKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV 60
MSSTD PAKGGRG+KSA KSV+RSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV
Sbjct: 1 MSSTDVPAKGGRGKKSAVKSVTRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV 60
Query: 61 LEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQS 120
LEYLAAEVLELAGNAARDNKK RI+PRHIQLAVRNDEELSKLLGSVTIASGGV+PKIHQS
Sbjct: 61 LEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIASGGVLPKIHQS 120
Query: 121 LLPKKAGSAKDKAEIGSASQEF 143
LLPKKAGS KDKAEIGSASQEF
Sbjct: 121 LLPKKAGSTKDKAEIGSASQEF 142
BLAST of Lag0002467 vs. ExPASy Swiss-Prot
Match:
O65759 (Histone H2AX OS=Cicer arietinum OX=3827 GN=HIS2A PE=2 SV=1)
HSP 1 Score: 218.4 bits (555), Expect = 5.2e-56
Identity = 118/142 (83.10%), Postives = 128/142 (90.14%), Query Frame = 0
Query: 1 MSSTDAPAKGGRGRKSASKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV 60
MSST A KGGRG+ ASKSVSRS KAGLQFPVGRIAR+LK G+YA+RVG+G+PVYLSAV
Sbjct: 1 MSST-ATTKGGRGKPKASKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60
Query: 61 LEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQS 120
LEYLAAEVLELAGNAARDNK NRI+PRHIQLAVRNDEELSKLLGSVTIA+GGV+P IHQ+
Sbjct: 61 LEYLAAEVLELAGNAARDNKNNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120
Query: 121 LLPKKAGSAKDKAEIGSASQEF 143
LLPKK G K K EIGSASQEF
Sbjct: 121 LLPKKVG--KGKGEIGSASQEF 139
BLAST of Lag0002467 vs. ExPASy Swiss-Prot
Match:
A2ZL69 (Probable histone H2AXb OS=Oryza sativa subsp. indica OX=39946 GN=OsI_037312 PE=3 SV=1)
HSP 1 Score: 216.9 bits (551), Expect = 1.5e-55
Identity = 113/139 (81.29%), Postives = 126/139 (90.65%), Query Frame = 0
Query: 4 TDAPAKGGRGRKSASKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAVLEY 63
+ A GGRG+ SKSVSRS KAGLQFPVGRIARYLK G+YA+RVG+G+PVYLSAVLEY
Sbjct: 2 SSAGGGGGRGKSKGSKSVSRSSKAGLQFPVGRIARYLKAGKYAERVGAGAPVYLSAVLEY 61
Query: 64 LAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQSLLP 123
LAAEVLELAGNAARDNKKNRI+PRHIQLAVRNDEELS+LLG+VTIA+GGV+P IHQ+LLP
Sbjct: 62 LAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGAVTIAAGGVLPNIHQTLLP 121
Query: 124 KKAGSAKDKAEIGSASQEF 143
KK G KDKA+IGSASQEF
Sbjct: 122 KKGG--KDKADIGSASQEF 138
BLAST of Lag0002467 vs. ExPASy Swiss-Prot
Match:
Q2QPG9 (Probable histone H2AXb OS=Oryza sativa subsp. japonica OX=39947 GN=Os12g0530000 PE=2 SV=1)
HSP 1 Score: 216.9 bits (551), Expect = 1.5e-55
Identity = 113/139 (81.29%), Postives = 126/139 (90.65%), Query Frame = 0
Query: 4 TDAPAKGGRGRKSASKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAVLEY 63
+ A GGRG+ SKSVSRS KAGLQFPVGRIARYLK G+YA+RVG+G+PVYLSAVLEY
Sbjct: 2 SSAGGGGGRGKSKGSKSVSRSSKAGLQFPVGRIARYLKAGKYAERVGAGAPVYLSAVLEY 61
Query: 64 LAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQSLLP 123
LAAEVLELAGNAARDNKKNRI+PRHIQLAVRNDEELS+LLG+VTIA+GGV+P IHQ+LLP
Sbjct: 62 LAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGAVTIAAGGVLPNIHQTLLP 121
Query: 124 KKAGSAKDKAEIGSASQEF 143
KK G KDKA+IGSASQEF
Sbjct: 122 KKGG--KDKADIGSASQEF 138
BLAST of Lag0002467 vs. ExPASy Swiss-Prot
Match:
P35063 (Histone H2AX OS=Picea abies OX=3329 PE=2 SV=1)
HSP 1 Score: 216.9 bits (551), Expect = 1.5e-55
Identity = 112/135 (82.96%), Postives = 126/135 (93.33%), Query Frame = 0
Query: 8 AKGGRGRKSASKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAVLEYLAAE 67
AKGGRG+ ++KSVSRS KAGLQFPVGRIAR+LK G+YA+RVG+G+PVYL+AVLEYLAAE
Sbjct: 6 AKGGRGKAKSTKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAE 65
Query: 68 VLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQSLLPKKAG 127
VLELAGNAARDNKKNRI+PRHIQLAVRNDEELSKLLG+VTIA+GGV+P IHQ LLPKK+G
Sbjct: 66 VLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGAVTIANGGVLPNIHQVLLPKKSG 125
Query: 128 SAKDKAEIGSASQEF 143
KDK EIGSASQEF
Sbjct: 126 --KDKGEIGSASQEF 138
BLAST of Lag0002467 vs. ExPASy Swiss-Prot
Match:
O04848 (Probable histone H2AXa OS=Arabidopsis thaliana OX=3702 GN=At1g08880 PE=1 SV=1)
HSP 1 Score: 212.2 bits (539), Expect = 3.7e-54
Identity = 110/134 (82.09%), Postives = 123/134 (91.79%), Query Frame = 0
Query: 9 KGGRGRKSASKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAVLEYLAAEV 68
KGGRG+ A+KSVSRS KAGLQFPVGRIAR+LK G+YA+RVG+G+PVYLSAVLEYLAAEV
Sbjct: 11 KGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKSGKYAERVGAGAPVYLSAVLEYLAAEV 70
Query: 69 LELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQSLLPKKAGS 128
LELAGNAARDNKK RI+PRHIQLAVRNDEELSKLLGSVTIA+GGV+P IHQ+LLP K G
Sbjct: 71 LELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPSKVG- 130
Query: 129 AKDKAEIGSASQEF 143
K+K +IGSASQEF
Sbjct: 131 -KNKGDIGSASQEF 142
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_038896926.1 | 5.4e-66 | 95.77 | histone H2AX-like [Benincasa hispida] | [more] |
KAG6575875.1 | 1.6e-65 | 95.77 | Histone H2AX, partial [Cucurbita argyrosperma subsp. sororia] | [more] |
XP_023548483.1 | 2.7e-65 | 95.07 | histone H2AX-like [Cucurbita pepo subsp. pepo] >XP_023548484.1 histone H2AX-like... | [more] |
XP_022953582.1 | 7.7e-65 | 95.07 | histone H2AX-like [Cucurbita moschata] | [more] |
KAG7025548.1 | 1.3e-64 | 94.37 | hypothetical protein SDJN02_12044 [Cucurbita argyrosperma subsp. argyrosperma] | [more] |
Match Name | E-value | Identity | Description | |
O65759 | 5.2e-56 | 83.10 | Histone H2AX OS=Cicer arietinum OX=3827 GN=HIS2A PE=2 SV=1 | [more] |
A2ZL69 | 1.5e-55 | 81.29 | Probable histone H2AXb OS=Oryza sativa subsp. indica OX=39946 GN=OsI_037312 PE=3... | [more] |
Q2QPG9 | 1.5e-55 | 81.29 | Probable histone H2AXb OS=Oryza sativa subsp. japonica OX=39947 GN=Os12g0530000 ... | [more] |
P35063 | 1.5e-55 | 82.96 | Histone H2AX OS=Picea abies OX=3329 PE=2 SV=1 | [more] |
O04848 | 3.7e-54 | 82.09 | Probable histone H2AXa OS=Arabidopsis thaliana OX=3702 GN=At1g08880 PE=1 SV=1 | [more] |