Lag0002455 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0002455
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	myb-like transcription factor family protein
Location	chr4: 43038186 .. 43038810 (-)
RNA-Seq Expression	Lag0002455
Synteny	Lag0002455

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCCCAATCTCCGATCCCTTTCCTGTTAATTTGACCGTCAAGAACGGCGGCGGCAGCCGGGGCGGCAGAGCTGCTGTTTCTGGGTTGTCTTCGCCGGCGGCGCAAGTGAAAGGACAGACAAAATTGTCCCAACAGCAACAGACCATAAGAAAACAGAGAAGATGTTGGTCGCCGGAGCTCCACCGGCGCTTCGTCGACGCACTGCACCGACTCGGCGGATCTCAAGGTTCGAAAGTTTTACAACTTTTAACCATCAGAACTTTCAAATCGAAGAATCTAATTATTGATCGATCTATTTCAATTTTGCAGTGGCAACACCAAAACAGATAAGGGAATTGATGCAAGTGGACAGCCTCACCAACGACGAAGTGAAAAGCCATTTACAAGTACGATTAACAAAAAAATAAATAAAAAAAAAAAACAAATTTCTGGGTTCGTTTAAAATCCTGAATGGATTTCCTTGATCATGAATTTTGAGGTTTTCAAAACAAATTTCTTCTTCCAGTCGCCGGATTTCAGGGATCTCGCCGGAAAGAAAATTCGAAAGTTACAGTCGGTTTGGATTTTATCGAAAGGATCTTTCTTAGATTTCACAGTTTGGATCTCATATTTTACCGATTAA

mRNA sequence

ATGACCCCAATCTCCGATCCCTTTCCTGTTAATTTGACCGTCAAGAACGGCGGCGGCAGCCGGGGCGGCAGAGCTGCTGTTTCTGGGTTGTCTTCGCCGGCGGCGCAAGTGAAAGGACAGACAAAATTGTCCCAACAGCAACAGACCATAAGAAAACAGAGAAGATGTTGGTCGCCGGAGCTCCACCGGCGCTTCGTCGACGCACTGCACCGACTCGGCGGATCTCAAGTGGCAACACCAAAACAGATAAGGGAATTGATGCAAGTGGACAGCCTCACCAACGACGAAGTGAAAAGCCATTTACAATCGCCGGATTTCAGGGATCTCGCCGGAAAGAAAATTCGAAAGTTACAGTCGGTTTGGATTTTATCGAAAGGATCTTTCTTAGATTTCACAGTTTGGATCTCATATTTTACCGATTAA

Coding sequence (CDS)

ATGACCCCAATCTCCGATCCCTTTCCTGTTAATTTGACCGTCAAGAACGGCGGCGGCAGCCGGGGCGGCAGAGCTGCTGTTTCTGGGTTGTCTTCGCCGGCGGCGCAAGTGAAAGGACAGACAAAATTGTCCCAACAGCAACAGACCATAAGAAAACAGAGAAGATGTTGGTCGCCGGAGCTCCACCGGCGCTTCGTCGACGCACTGCACCGACTCGGCGGATCTCAAGTGGCAACACCAAAACAGATAAGGGAATTGATGCAAGTGGACAGCCTCACCAACGACGAAGTGAAAAGCCATTTACAATCGCCGGATTTCAGGGATCTCGCCGGAAAGAAAATTCGAAAGTTACAGTCGGTTTGGATTTTATCGAAAGGATCTTTCTTAGATTTCACAGTTTGGATCTCATATTTTACCGATTAA

Protein sequence

MTPISDPFPVNLTVKNGGGSRGGRAAVSGLSSPAAQVKGQTKLSQQQQTIRKQRRCWSPELHRRFVDALHRLGGSQVATPKQIRELMQVDSLTNDEVKSHLQSPDFRDLAGKKIRKLQSVWILSKGSFLDFTVWISYFTD

Homology

[Close]

BLAST of Lag0002455 vs. NCBI nr
Match: XP_008440244.1 (PREDICTED: uncharacterized protein LOC103484758 [Cucumis melo])

HSP 1 Score: 187.2 bits (474), Expect = 9.7e-44
Identity = 96/103 (93.20%), Postives = 97/103 (94.17%), Query Frame = 0


Query: 1   MTPISDPFPVNLTVKNGG-GSRGGRAAVSGLSSPAAQVKGQTKLSQQQQTIRKQRRCWSP 60
           MTPISDPFPVNLTVKNGG G R GRAAVSGLSSPA Q+KGQ KLSQQQQTIRKQRRCWSP
Sbjct: 191 MTPISDPFPVNLTVKNGGNGGRNGRAAVSGLSSPAGQMKGQAKLSQQQQTIRKQRRCWSP 250

Query: 61  ELHRRFVDALHRLGGSQVATPKQIRELMQVDSLTNDEVKSHLQ 103
           ELHRRFVDALHRLGGSQVATPKQIRELMQVD LTNDEVKSHLQ
Sbjct: 251 ELHRRFVDALHRLGGSQVATPKQIRELMQVDGLTNDEVKSHLQ 293

[Close]

BLAST of Lag0002455 vs. NCBI nr
Match: XP_004141926.1 (transcription factor HHO5 [Cucumis sativus] >KGN48504.1 hypothetical protein Csa_004116 [Cucumis sativus])

HSP 1 Score: 186.8 bits (473), Expect = 1.3e-43
Identity = 96/103 (93.20%), Postives = 97/103 (94.17%), Query Frame = 0


Query: 1   MTPISDPFPVNLTVKNGG-GSRGGRAAVSGLSSPAAQVKGQTKLSQQQQTIRKQRRCWSP 60
           MTPISDPFPVNLTVKNGG G R GRAAVSGLSSPA Q+KGQ KLSQQQQTIRKQRRCWSP
Sbjct: 191 MTPISDPFPVNLTVKNGGNGGRNGRAAVSGLSSPAGQMKGQPKLSQQQQTIRKQRRCWSP 250

Query: 61  ELHRRFVDALHRLGGSQVATPKQIRELMQVDSLTNDEVKSHLQ 103
           ELHRRFVDALHRLGGSQVATPKQIRELMQVD LTNDEVKSHLQ
Sbjct: 251 ELHRRFVDALHRLGGSQVATPKQIRELMQVDGLTNDEVKSHLQ 293

[Close]

BLAST of Lag0002455 vs. NCBI nr
Match: XP_038881045.1 (transcription factor HHO5 [Benincasa hispida])

HSP 1 Score: 184.9 bits (468), Expect = 4.8e-43
Identity = 95/103 (92.23%), Postives = 98/103 (95.15%), Query Frame = 0


Query: 1   MTPISDPFPVNLTVKN-GGGSRGGRAAVSGLSSPAAQVKGQTKLSQQQQTIRKQRRCWSP 60
           MTPISDPFPV+LTVK+ GGG R GRAAVSGLSSPAAQ+KGQ KLSQQQQTIRKQRRCWSP
Sbjct: 194 MTPISDPFPVSLTVKSGGGGGRSGRAAVSGLSSPAAQMKGQAKLSQQQQTIRKQRRCWSP 253

Query: 61  ELHRRFVDALHRLGGSQVATPKQIRELMQVDSLTNDEVKSHLQ 103
           ELHRRFVDALHRLGGSQVATPKQIRELMQVD LTNDEVKSHLQ
Sbjct: 254 ELHRRFVDALHRLGGSQVATPKQIRELMQVDGLTNDEVKSHLQ 296

[Close]

BLAST of Lag0002455 vs. NCBI nr
Match: XP_022133033.1 (transcription factor HHO5 [Momordica charantia])

HSP 1 Score: 183.0 bits (463), Expect = 1.8e-42
Identity = 94/102 (92.16%), Postives = 95/102 (93.14%), Query Frame = 0


Query: 1   MTPISDPFPVNLTVKNGGGSRGGRAAVSGLSSPAAQVKGQTKLSQQQQTIRKQRRCWSPE 60
           MTPISDPFPVNLTVKN G  RG RAAV GLSSPAAQ+K QTKLSQQQQTIRKQRRCWSPE
Sbjct: 188 MTPISDPFPVNLTVKNSG--RGARAAVPGLSSPAAQIKAQTKLSQQQQTIRKQRRCWSPE 247

Query: 61  LHRRFVDALHRLGGSQVATPKQIRELMQVDSLTNDEVKSHLQ 103
           LHRRFVDALHRLGGSQVATPKQIRELMQVD LTNDEVKSHLQ
Sbjct: 248 LHRRFVDALHRLGGSQVATPKQIRELMQVDGLTNDEVKSHLQ 287

[Close]

BLAST of Lag0002455 vs. NCBI nr
Match: XP_023543987.1 (myb family transcription factor EFM-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 170.2 bits (430), Expect = 1.2e-38
Identity = 90/105 (85.71%), Postives = 93/105 (88.57%), Query Frame = 0


Query: 1   MTPISDPFP--VNLTVKNGG-GSRGGRAAVSGLSSPAAQVKGQTKLSQQQQTIRKQRRCW 60
           MT ISDPFP  VNLTVKNG  G R GRAAVSG SSPA Q+ GQTKLSQQQQTIRKQRRCW
Sbjct: 104 MTTISDPFPVNVNLTVKNGRVGGRSGRAAVSGSSSPAVQINGQTKLSQQQQTIRKQRRCW 163

Query: 61  SPELHRRFVDALHRLGGSQVATPKQIRELMQVDSLTNDEVKSHLQ 103
           SP LHRRF+DALHRLGGSQVATPKQI+ELMQVD LTNDEVKSHLQ
Sbjct: 164 SPGLHRRFIDALHRLGGSQVATPKQIKELMQVDGLTNDEVKSHLQ 208

[Close]

BLAST of Lag0002455 vs. ExPASy Swiss-Prot
Match: Q9FPE8 (Transcription factor HHO3 OS=Arabidopsis thaliana OX=3702 GN=HHO3 PE=1 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.7e-19
Identity = 51/74 (68.92%), Postives = 59/74 (79.73%), Query Frame = 0


Query: 31  SSPAAQVKGQTKLSQQQQ--TIRKQRRCWSPELHRRFVDALHRLGGSQVATPKQIRELMQ 90
           SS A  V G  +  +Q+Q  + RKQRRCWSPELHRRF+ AL +LGGS VATPKQIR+LM+
Sbjct: 186 SSTAETVGGGKEFEEQKQSHSNRKQRRCWSPELHRRFLHALQQLGGSHVATPKQIRDLMK 245

Query: 91  VDSLTNDEVKSHLQ 103
           VD LTNDEVKSHLQ
Sbjct: 246 VDGLTNDEVKSHLQ 259

[Close]

BLAST of Lag0002455 vs. ExPASy Swiss-Prot
Match: Q9ZQ85 (Myb family transcription factor EFM OS=Arabidopsis thaliana OX=3702 GN=EFM PE=1 SV=2)

HSP 1 Score: 95.5 bits (236), Expect = 5.0e-19
Identity = 47/59 (79.66%), Postives = 50/59 (84.75%), Query Frame = 0


Query: 44  SQQQQTIRKQRRCWSPELHRRFVDALHRLGGSQVATPKQIRELMQVDSLTNDEVKSHLQ 103
           S   Q+ RK RRCWSP+LHRRFV AL  LGGSQVATPKQIRELM+VD LTNDEVKSHLQ
Sbjct: 225 STTSQSNRKARRCWSPDLHRRFVQALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQ 283

[Close]

BLAST of Lag0002455 vs. ExPASy Swiss-Prot
Match: Q5VRW2 (Transcription factor NIGTH1 OS=Oryza sativa subsp. japonica OX=39947 GN=NHO1 PE=1 SV=2)

HSP 1 Score: 95.5 bits (236), Expect = 5.0e-19
Identity = 52/79 (65.82%), Postives = 58/79 (73.42%), Query Frame = 0


Query: 24  RAAVSGLSSPAAQVKGQTKLSQQQQTIRKQRRCWSPELHRRFVDALHRLGGSQVATPKQI 83
           R A +G   P+    GQ  +    Q  RK RRCWSPELHRRFV+AL  LGG+QVATPKQI
Sbjct: 239 REAQNGGKPPSTPSDGQA-VPPPPQPHRKARRCWSPELHRRFVNALQILGGAQVATPKQI 298

Query: 84  RELMQVDSLTNDEVKSHLQ 103
           RELM+VD LTNDEVKSHLQ
Sbjct: 299 RELMKVDGLTNDEVKSHLQ 316

[Close]

BLAST of Lag0002455 vs. ExPASy Swiss-Prot
Match: Q8VZS3 (Transcription factor HHO2 OS=Arabidopsis thaliana OX=3702 GN=HHO2 PE=1 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.1e-18
Identity = 47/66 (71.21%), Postives = 55/66 (83.33%), Query Frame = 0


Query: 40  QTKLSQQQ---QTIRKQRRCWSPELHRRFVDALHRLGGSQVATPKQIRELMQVDSLTNDE 99
           + ++ QQQ    T RKQRRCWSPELHRRF++AL +LGGS VATPKQIR+ M+VD LTNDE
Sbjct: 200 ERRIEQQQSQSHTHRKQRRCWSPELHRRFLNALQQLGGSHVATPKQIRDHMKVDGLTNDE 259

Query: 100 VKSHLQ 103
           VKSHLQ
Sbjct: 260 VKSHLQ 265

[Close]

BLAST of Lag0002455 vs. ExPASy Swiss-Prot
Match: Q9FX84 (Transcription factor HHO6 OS=Arabidopsis thaliana OX=3702 GN=HHO6 PE=2 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.1e-18
Identity = 56/113 (49.56%), Postives = 64/113 (56.64%), Query Frame = 0


Query: 28  SGLSSPAAQVKGQTKLSQQQQTIRKQRRCWSPELHRRFVDALHRLGGSQVATPKQIRELM 87
           + +  P      Q     +QQ +RKQRRCW+PELHRRFVDAL +LGG  VATPKQIRE M
Sbjct: 168 NSMPQPPTPAVPQQPAFLKQQALRKQRRCWNPELHRRFVDALQQLGGPGVATPKQIREHM 227

Query: 88  QVDSLTNDEVKSHLQSPDFRDLAGKKIRKLQSVWILSKGSFLDFTVWISYFTD 141
           Q + LTNDEVKSHLQ           IRK  S         L F +W S   D
Sbjct: 228 QEEGLTNDEVKSHLQKYRLH------IRKPNSNAEKQSAVVLGFNLWNSSAQD 274

The following BLAST results are available for this feature:

BLAST of Lag0002455 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008440244.1	9.7e-44	93.20	PREDICTED: uncharacterized protein LOC103484758 [Cucumis melo]	[more]
XP_004141926.1	1.3e-43	93.20	transcription factor HHO5 [Cucumis sativus] >KGN48504.1 hypothetical protein Csa...	[more]
XP_038881045.1	4.8e-43	92.23	transcription factor HHO5 [Benincasa hispida]	[more]
XP_022133033.1	1.8e-42	92.16	transcription factor HHO5 [Momordica charantia]	[more]
XP_023543987.1	1.2e-38	85.71	myb family transcription factor EFM-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Lag0002455 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FPE8	1.7e-19	68.92	Transcription factor HHO3 OS=Arabidopsis thaliana OX=3702 GN=HHO3 PE=1 SV=1	[more]
Q9ZQ85	5.0e-19	79.66	Myb family transcription factor EFM OS=Arabidopsis thaliana OX=3702 GN=EFM PE=1 ...	[more]
Q5VRW2	5.0e-19	65.82	Transcription factor NIGTH1 OS=Oryza sativa subsp. japonica OX=39947 GN=NHO1 PE=...	[more]
Q8VZS3	1.1e-18	71.21	Transcription factor HHO2 OS=Arabidopsis thaliana OX=3702 GN=HHO2 PE=1 SV=1	[more]
Q9FX84	1.1e-18	49.56	Transcription factor HHO6 OS=Arabidopsis thaliana OX=3702 GN=HHO6 PE=2 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR017930	Myb domain	PFAM	PF00249	Myb_DNA-binding	coord: 54..102 e-value: 1.9E-6 score: 28.0
IPR017930	Myb domain	PROSITE	PS51294	HTH_MYB	coord: 49..103 score: 9.969424
None	No IPR available	GENE3D	1.10.10.60		coord: 51..108 e-value: 2.9E-23 score: 83.7
None	No IPR available	PANTHER	PTHR31003:SF3	TRANSCRIPTION FACTOR HHO6	coord: 35..102
IPR006447	Myb domain, plants	TIGRFAM	TIGR01557	TIGR01557	coord: 52..102 e-value: 4.7E-23 score: 79.3
IPR044787	Myb family transcription factor HRS1-like	PANTHER	PTHR31003	MYB FAMILY TRANSCRIPTION FACTOR	coord: 35..102
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 49..102

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0002455.1	Lag0002455.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	DNA-binding transcription factor activity