Lag0002448 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0002448
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	methyl-CpG-binding domain-containing protein 4-like
Location	chr4: 42993479 .. 42995230 (-)
RNA-Seq Expression	Lag0002448
Synteny	Lag0002448

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGCTGCCAGACCTCCCAAAACGCCGACGAAGGTACGGCCGAAACCCTATCCTCTTCGTTCGATTTGTTCAATATATCGATATCCTTCGTAATTTCCCTTCTGATCGGATTCAATTTTCTTTCATTTGGTTCTGTTTCGAAAATGTAGCCCTTAAGTTCTGGAGATCGAAATTGGAAATAGGTCACTAGGAAAAGGATATAATCAAACTTATGCTGCTTGGAGCTTGTTACATCTTTATTTTCCTCTTCTAAGAAGGAATATCGGAGTTTTGTTTAGAATGTTACAGGGTAGACTAAATATGGGGATTTGAATCTATGAACTTGTGTTATGCTTAACTATTGAAACAGGCGATTTACAAAACTTGATACTAGTTTGTAGGTCCATCTCTAAGTATTTTGTGAGAATTTGTGTTCCTTTAGATCAATTCGCAGCAATTCGGATATAATCTTAGGGAGTTGAAATATTTGTTGGCAATGGCAATAGGGAAGTTACTTTGATATTCAGAGTCAGCTGTTCTGGAACACTCAATTTTGTTCGGTTAGGCCCCGTTTGATAACCTTTTGGTTTTTTATTTTTGAAAATTATGCTTGTTTTCTTTCAATTTCCTTACCATGGTTTTCATTTTTGTTAAGTAGACATTTGTGTTCTTAGCAAAATTCCAAAAACAAAACAAGTTTTTGAAAACTAATTATTTTTGTTTTCAATTTTTGACTTGGTTTTTAAAACATGGGAAGATTGTATATAATAAAACAAAGAAAGTTGTGGGTGATACTGACAGTAGTGTTTATAAATTTAATTTTCAAAAACCAAAAACAAAAAACGAAATGGTTATCAAACATGACCTTAGTTTTTCTTTTTCACTAGGTGCTTAATTTAGACATGGTCTTTTCTGTTTTATCATAGAATATAGTGAATGTTATGAAAATTTTGAGTGGATGGGATTTGCTAAGATTGTTTAGCGAAGTCCAAAGGATATTTGAAGTCATATCATCATTTGAATTGCCCACAATGTATCTGTCTGATGGATCAATTTGGATTGTTTTTCAAATGTTGAAGTTTGAAAGTGAATTTTCTCTCAAGTTTCAGGGATCAAAAGTGGGAGTTTTACAGATTTTAACTTAGAACTTGCAGGGGATCTTCATTTGTAGTTGCATTGATTATTGAATCTATAAATAAGAAATTCATGCAATTATTGGAAGCCTCTTTTAGTGTAAGCTAAGGTGCTATTGGTTTCTCTATACAGTCAGCAGGGCTGGGAGTAGATCTGTATGCTGCCCAATGTGAGGAATGCTCCAAATGGAGGTTGATAAGTACTCAAGAGGAGTACGAGGATATTAGAAGCAAAGTGATAGAAGAACCCTTTACTTGCCGTAGGAAAACCGATACTTCTTGCGAGGATCCTCCAGATATCGACTACAATACAACTCGAACTTGGGTCATTGACAAACCCAACATCCCAAAGACCCCAAAAGGCTTCAAGAGACGTTTGGTACTGAGAAAAAATTTCTCTAAATTAGATGCTTCCTATATCACACCCACAGGGAAGAGGGTGAGATCCTCTATAGAGATGCAAGCCTATGTAGAAGCAAATCCACAGTACAAGGATGTACCTCTTTCAAGCTTCAGTTTTGCAGTCCCAAAAGTAATTGAAGAGACTGTGCCTGAAAGCATCTTGAAAGAGAGCCTAAATAGCAGTAGTGCCAAAAAAATTAAGAAGACAAAGGATGAATCTGTCCATACTGACTGA

mRNA sequence

ATGGCCGCTGCCAGACCTCCCAAAACGCCGACGAAGTCAGCAGGGCTGGGAGTAGATCTGTATGCTGCCCAATGTGAGGAATGCTCCAAATGGAGGTTGATAAGTACTCAAGAGGAGTACGAGGATATTAGAAGCAAAGTGATAGAAGAACCCTTTACTTGCCGTAGGAAAACCGATACTTCTTGCGAGGATCCTCCAGATATCGACTACAATACAACTCGAACTTGGGTCATTGACAAACCCAACATCCCAAAGACCCCAAAAGGCTTCAAGAGACGTTTGGTACTGAGAAAAAATTTCTCTAAATTAGATGCTTCCTATATCACACCCACAGGGAAGAGGGTGAGATCCTCTATAGAGATGCAAGCCTATGTAGAAGCAAATCCACAGTACAAGGATGTACCTCTTTCAAGCTTCAGTTTTGCAGTCCCAAAAGTAATTGAAGAGACTGTGCCTGAAAGCATCTTGAAAGAGAGCCTAAATAGCAGTAGTGCCAAAAAAATTAAGAAGACAAAGGATGAATCTGTCCATACTGACTGA

Coding sequence (CDS)

ATGGCCGCTGCCAGACCTCCCAAAACGCCGACGAAGTCAGCAGGGCTGGGAGTAGATCTGTATGCTGCCCAATGTGAGGAATGCTCCAAATGGAGGTTGATAAGTACTCAAGAGGAGTACGAGGATATTAGAAGCAAAGTGATAGAAGAACCCTTTACTTGCCGTAGGAAAACCGATACTTCTTGCGAGGATCCTCCAGATATCGACTACAATACAACTCGAACTTGGGTCATTGACAAACCCAACATCCCAAAGACCCCAAAAGGCTTCAAGAGACGTTTGGTACTGAGAAAAAATTTCTCTAAATTAGATGCTTCCTATATCACACCCACAGGGAAGAGGGTGAGATCCTCTATAGAGATGCAAGCCTATGTAGAAGCAAATCCACAGTACAAGGATGTACCTCTTTCAAGCTTCAGTTTTGCAGTCCCAAAAGTAATTGAAGAGACTGTGCCTGAAAGCATCTTGAAAGAGAGCCTAAATAGCAGTAGTGCCAAAAAAATTAAGAAGACAAAGGATGAATCTGTCCATACTGACTGA

Protein sequence

MAAARPPKTPTKSAGLGVDLYAAQCEECSKWRLISTQEEYEDIRSKVIEEPFTCRRKTDTSCEDPPDIDYNTTRTWVIDKPNIPKTPKGFKRRLVLRKNFSKLDASYITPTGKRVRSSIEMQAYVEANPQYKDVPLSSFSFAVPKVIEETVPESILKESLNSSSAKKIKKTKDESVHTD

Homology

[Close]

BLAST of Lag0002448 vs. NCBI nr
Match: XP_038896997.1 (methyl-CpG-binding domain-containing protein 4-like [Benincasa hispida])

HSP 1 Score: 303.1 bits (775), Expect = 1.6e-78
Identity = 151/179 (84.36%), Postives = 163/179 (91.06%), Query Frame = 0


Query: 1   MAAARPPKTPTKSAGLGVDLYAAQCEECSKWRLISTQEEYEDIRSKVIEEPFTCRRKTDT 60
           MAAARPPKTP KSA L V L+AAQCEEC KWRLISTQEEYEDIRSK+IEEPFTC RKTDT
Sbjct: 30  MAAARPPKTPVKSARLPVGLFAAQCEECFKWRLISTQEEYEDIRSKMIEEPFTCPRKTDT 89

Query: 61  SCEDPPDIDYNTTRTWVIDKPNIPKTPKGFKRRLVLRKNFSKLDASYITPTGKRVRSSIE 120
           SC++PPDIDY+TTRTW IDKPNIPKTP GF RRLVLRKNFSK DA Y+TPTGK VRSS E
Sbjct: 90  SCDNPPDIDYDTTRTWGIDKPNIPKTPHGFTRRLVLRKNFSKFDAYYVTPTGKTVRSSTE 149

Query: 121 MQAYVEANPQYKDVPLSSFSFAVPKVIEETVPESILKESLNSSSAKKIKKTKDESVHTD 180
           M A+VEANP+YKD+PLSSFSFAVPKV+EETVPESILKE LNSSSAK+IKKTKDES HT+
Sbjct: 150 MLAFVEANPEYKDIPLSSFSFAVPKVMEETVPESILKEGLNSSSAKRIKKTKDESAHTN 208

[Close]

BLAST of Lag0002448 vs. NCBI nr
Match: XP_004148873.1 (methyl-CpG-binding domain-containing protein 4 [Cucumis sativus] >KGN44852.1 hypothetical protein Csa_016159 [Cucumis sativus])

HSP 1 Score: 294.7 bits (753), Expect = 5.5e-76
Identity = 145/178 (81.46%), Postives = 161/178 (90.45%), Query Frame = 0


Query: 2   AAARPPKTPTKSAGLGVDLYAAQCEECSKWRLISTQEEYEDIRSKVIEEPFTCRRKTDTS 61
           AA RPPKTPTKS  L V L+AAQCEEC KWRLISTQEEYE IRSK+IEEPFTC+RKTDTS
Sbjct: 4   AADRPPKTPTKSTRLPVGLFAAQCEECFKWRLISTQEEYEGIRSKIIEEPFTCQRKTDTS 63

Query: 62  CEDPPDIDYNTTRTWVIDKPNIPKTPKGFKRRLVLRKNFSKLDASYITPTGKRVRSSIEM 121
           CEDPPDIDY+TTRTW IDKPNIPKTP+GF RRLVLRKNF+K DA Y+TPTGK VRSS E+
Sbjct: 64  CEDPPDIDYDTTRTWGIDKPNIPKTPEGFTRRLVLRKNFTKFDAYYVTPTGKTVRSSTEV 123

Query: 122 QAYVEANPQYKDVPLSSFSFAVPKVIEETVPESILKESLNSSSAKKIKKTKDESVHTD 180
            A+VEANPQYKD+ LS+FSFAVPK++EETVPESILKE LNSSSAK+IKKTK+ES HT+
Sbjct: 124 LAFVEANPQYKDIALSNFSFAVPKIMEETVPESILKEGLNSSSAKRIKKTKNESAHTE 181

[Close]

BLAST of Lag0002448 vs. NCBI nr
Match: XP_022150154.1 (methyl-CpG-binding domain-containing protein 4-like [Momordica charantia])

HSP 1 Score: 292.4 bits (747), Expect = 2.7e-75
Identity = 144/179 (80.45%), Postives = 159/179 (88.83%), Query Frame = 0


Query: 1   MAAARPPKTPTKSAGLGVDLYAAQCEECSKWRLISTQEEYEDIRSKVIEEPFTCRRKTDT 60
           MA ARPP+ P KS  L VDLYAAQCEEC KWRLISTQEEYEDIRSK+IEEPFTC RKTDT
Sbjct: 26  MAGARPPRKPVKSKRLPVDLYAAQCEECFKWRLISTQEEYEDIRSKLIEEPFTCNRKTDT 85

Query: 61  SCEDPPDIDYNTTRTWVIDKPNIPKTPKGFKRRLVLRKNFSKLDASYITPTGKRVRSSIE 120
           SCED  DIDY+ TRTWVIDKPNIPKTP+GFKRRLVLRK+FSK DA YITPTGK VRSS E
Sbjct: 86  SCEDASDIDYDATRTWVIDKPNIPKTPEGFKRRLVLRKDFSKFDAYYITPTGKTVRSSTE 145

Query: 121 MQAYVEANPQYKDVPLSSFSFAVPKVIEETVPESILKESLNSSSAKKIKKTKDESVHTD 180
           M +++EANP+YKD+PLS FSFAVPKV+EETVPESIL+E L+SSSAK+IKK KD+S HTD
Sbjct: 146 MLSFIEANPKYKDIPLSKFSFAVPKVMEETVPESILREDLSSSSAKRIKKVKDKSAHTD 204

[Close]

BLAST of Lag0002448 vs. NCBI nr
Match: KAA0057559.1 (methyl-CpG-binding domain-containing protein 4 [Cucumis melo var. makuwa] >TYK18280.1 methyl-CpG-binding domain-containing protein 4 [Cucumis melo var. makuwa])

HSP 1 Score: 288.1 bits (736), Expect = 5.2e-74
Identity = 140/178 (78.65%), Postives = 161/178 (90.45%), Query Frame = 0


Query: 2   AAARPPKTPTKSAGLGVDLYAAQCEECSKWRLISTQEEYEDIRSKVIEEPFTCRRKTDTS 61
           AAARPPKTP KS  + V L+AAQCEEC KWRLISTQEEYEDIRS++IEEPFTC+R+TDTS
Sbjct: 3   AAARPPKTPIKSTRVPVGLFAAQCEECFKWRLISTQEEYEDIRSRMIEEPFTCQRRTDTS 62

Query: 62  CEDPPDIDYNTTRTWVIDKPNIPKTPKGFKRRLVLRKNFSKLDASYITPTGKRVRSSIEM 121
           CEDPPDI+Y+TTRTW IDKPNIPKTP+GF RRLVLRKNF+K DA Y+TPTGK VRS  E+
Sbjct: 63  CEDPPDINYDTTRTWGIDKPNIPKTPEGFTRRLVLRKNFTKFDAYYVTPTGKTVRSPTEI 122

Query: 122 QAYVEANPQYKDVPLSSFSFAVPKVIEETVPESILKESLNSSSAKKIKKTKDESVHTD 180
            A+V+ANPQYKD+ LS+FSFAVPK++EETVPESILKE LNSSSAK+IKKTK+ES HT+
Sbjct: 123 LAFVQANPQYKDIALSNFSFAVPKIMEETVPESILKEGLNSSSAKRIKKTKNESAHTE 180

[Close]

BLAST of Lag0002448 vs. NCBI nr
Match: XP_008451407.1 (PREDICTED: methyl-CpG-binding domain-containing protein 4 [Cucumis melo])

HSP 1 Score: 285.8 bits (730), Expect = 2.6e-73
Identity = 139/178 (78.09%), Postives = 160/178 (89.89%), Query Frame = 0


Query: 2   AAARPPKTPTKSAGLGVDLYAAQCEECSKWRLISTQEEYEDIRSKVIEEPFTCRRKTDTS 61
           AAARPPKTP KS  + V L+A QCEEC KWRLISTQEEYEDIRS++IEEPFTC+RKTDTS
Sbjct: 3   AAARPPKTPIKSTRVPVSLFAVQCEECFKWRLISTQEEYEDIRSRMIEEPFTCQRKTDTS 62

Query: 62  CEDPPDIDYNTTRTWVIDKPNIPKTPKGFKRRLVLRKNFSKLDASYITPTGKRVRSSIEM 121
           CEDPPDI+Y+TTRTW IDKPNIPKTP+GF RRLVLRKNF+K DA Y+TPTGK VRS  E+
Sbjct: 63  CEDPPDINYDTTRTWGIDKPNIPKTPEGFTRRLVLRKNFTKFDAYYVTPTGKTVRSPTEI 122

Query: 122 QAYVEANPQYKDVPLSSFSFAVPKVIEETVPESILKESLNSSSAKKIKKTKDESVHTD 180
            A+V+ANPQYKD+ LS+FSFAVPK++EETVPESILKE LNSSSAK+IKKTK+ES +T+
Sbjct: 123 LAFVQANPQYKDIALSNFSFAVPKIMEETVPESILKEGLNSSSAKRIKKTKNESAYTE 180

[Close]

BLAST of Lag0002448 vs. ExPASy Swiss-Prot
Match: Q9LYB9 (Methyl-CpG-binding domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=MBD4 PE=1 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 1.9e-50
Identity = 89/149 (59.73%), Postives = 119/149 (79.87%), Query Frame = 0


Query: 4   ARPPKTPTKSAGLGVDLYAAQCEECSKWRLISTQEEYEDIRSKVIEEPFTCRRKTDTSCE 63
           A+P      + G  +D YAAQC+ C KWR+I +QEEYEDIRSK++E+PF C++K   SCE
Sbjct: 11  AKPKAKKDVAPGRLIDTYAAQCDNCHKWRVIDSQEEYEDIRSKMLEDPFNCQKKQGMSCE 70

Query: 64  DPPDIDYNTTRTWVIDKPNIPKTPKGFKRRLVLRKNFSKLDASYITPTGKRVRSSIEMQA 123
           +P DIDY+++RTWVIDKP +PKTPKGFKR LVLRK++SK+D  Y TPTGK++RS  E+ A
Sbjct: 71  EPADIDYDSSRTWVIDKPGLPKTPKGFKRSLVLRKDYSKMDTYYFTPTGKKLRSRNEIAA 130

Query: 124 YVEANPQYKDVPLSSFSFAVPKVIEETVP 153
           +VEANP++++ PL  F+F VPKV+E+TVP
Sbjct: 131 FVEANPEFRNAPLGDFNFTVPKVMEDTVP 159

[Close]

BLAST of Lag0002448 vs. ExPASy Swiss-Prot
Match: Q5XEN5 (Methyl-CpG-binding domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=MBD1 PE=1 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 2.1e-46
Identity = 85/152 (55.92%), Postives = 115/152 (75.66%), Query Frame = 0


Query: 15  GLGVDLYAAQCEECSKWRLISTQEEYEDIRSKVIEEPFTCRRKTDTSCEDPPDIDYNTTR 74
           G  +D++A QCE+C KWR I TQ+EYEDIRS+V E+PF C+ K   SCED  D++Y+++R
Sbjct: 49  GRSIDVFAVQCEKCMKWRKIDTQDEYEDIRSRVQEDPFFCKTKEGVSCEDVGDLNYDSSR 108

Query: 75  TWVIDKPNIPKTPKGFKRRLVLRKNFSKLDASYITPTGKRVRSSIEMQAYVEANPQYKDV 134
           TWVIDKP +P+TP+GFKR L+LRK++SK+DA YITPTGK+++S  E+ A+++AN  YK  
Sbjct: 109 TWVIDKPGLPRTPRGFKRSLILRKDYSKMDAYYITPTGKKLKSRNEIAAFIDANQDYKYA 168

Query: 135 PLSSFSFAVPKVIEETVPESILKESLNSSSAK 167
            L  F+F VPKV+EETVP  IL +     S K
Sbjct: 169 LLGDFNFTVPKVMEETVPSGILSDRTPKPSRK 200

[Close]

BLAST of Lag0002448 vs. ExPASy Swiss-Prot
Match: Q8LA53 (Methyl-CpG-binding domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=MBD2 PE=1 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 3.9e-24
Identity = 59/154 (38.31%), Postives = 93/154 (60.39%), Query Frame = 0


Query: 4   ARPPKTPTKSAGLGVDLYAAQCEECSKWRLISTQEEYEDIRSKVIEEPFTC----RRKTD 63
           ++P  + T+   +G   +  QC  C KWRL+ + ++YE+IR +++E PF C      K D
Sbjct: 44  SQPLSSRTQCPSIGA--FTVQCASCFKWRLMPSMQKYEEIREQLLENPFFCDTAREWKPD 103

Query: 64  TSCEDPPDIDYNTTRTWVIDKPNIPKTPKGFKRRLVLRKNFSK--LDASYITPTGKRVRS 123
            SC+ P DI  + TR W IDKPNI + P G++R L +R        D  Y+ P+GK++RS
Sbjct: 104 ISCDVPADIYQDGTRLWAIDKPNISRPPAGWQRLLRIRGEGGTRFADVYYVAPSGKKLRS 163

Query: 124 SIEMQAYVEANPQY--KDVPLSSFSFAVPKVIEE 150
           ++E+Q Y+  N +Y  + V LS FSF +PK +++
Sbjct: 164 TVEVQKYLNDNSEYIGEGVKLSQFSFQIPKPLQD 195

[Close]

BLAST of Lag0002448 vs. ExPASy Swiss-Prot
Match: Q4PSK1 (Methyl-CpG-binding domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=MBD3 PE=2 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 6.2e-22
Identity = 65/167 (38.92%), Postives = 99/167 (59.28%), Query Frame = 0


Query: 18  VDLYAAQCEECSKWRLISTQEEYEDIRSKVIEEPFTCRRKTDTSCEDPPDIDYN---TTR 77
           +D YAAQC +C K R I +QE+YE+IRSK +E+ F C+R     CE+P D+  N    T 
Sbjct: 9   IDSYAAQCWKCLKVRSIESQEDYEEIRSKTLEKFFECKR-----CEEPGDMVMNFDSLTM 68

Query: 78  TWVIDKPNIPKTPKGFKRRLVLRKNFSKLDASY--ITPTGKRVRSSIEMQAYVEANPQYK 137
            W  D+ +IPKTP+G KR LV+R N  K+D  Y  + P  KR +S  E+  ++E   ++K
Sbjct: 69  RWFQDEHSIPKTPQGLKRVLVVRTNCVKVDVYYESLAPRRKRFKSIKEVATFIEDKEEFK 128

Query: 138 DVPLSSFSFAVPKVIEETVPESILKESLNSSSAKKIKKTKDESVHTD 180
           D+ L   SFA PK ++      + K+ ++S S+   + T+++ V  D
Sbjct: 129 DMTLEEVSFAAPKRLK------LKKKPVDSHSSS--RNTEEDGVSRD 162

[Close]

BLAST of Lag0002448 vs. ExPASy Swiss-Prot
Match: Q9FZP6 (Putative methyl-CpG-binding domain protein 12 OS=Arabidopsis thaliana OX=3702 GN=MBD12 PE=3 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 2.8e-14
Identity = 51/159 (32.08%), Postives = 84/159 (52.83%), Query Frame = 0


Query: 24  QCEECSKWRLISTQEEYEDIRSKVIEEPFTCRRKT----DTSCEDPPDIDYNTTRTWVID 83
           QC +C KWRLI + + Y  I+   ++ PF C   +    + SC  P   D  T  TW   
Sbjct: 3   QCTDCKKWRLIPSMQHYNIIKETQLQTPFVCGTTSGWTPNMSCNVPQ--DGTTCDTW--- 62

Query: 84  KPNIPKTPKGFKRRLVLRKNFSKL-DASYITPTGKRVRSSIEMQAYVEANPQY--KDVPL 143
            P+IP  P G+ R + +R   +K  D  Y  P+G+R+RSS E+Q++++ +P+Y  + V  
Sbjct: 63  -PSIPPIPTGWSRSVHIRSESTKFADVYYFPPSGERLRSSAEVQSFLDNHPEYVREGVNR 122

Query: 144 SSFSFAVPKVIEETVPESILKESLNSSSAKKIKKTKDES 176
           S FSF +PK +++   +        +   K+ K +KD +
Sbjct: 123 SQFSFQIPKPLDDNYVKK------RTRPVKRRKSSKDNN 149

The following BLAST results are available for this feature:

BLAST of Lag0002448 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038896997.1	1.6e-78	84.36	methyl-CpG-binding domain-containing protein 4-like [Benincasa hispida]	[more]
XP_004148873.1	5.5e-76	81.46	methyl-CpG-binding domain-containing protein 4 [Cucumis sativus] >KGN44852.1 hyp...	[more]
XP_022150154.1	2.7e-75	80.45	methyl-CpG-binding domain-containing protein 4-like [Momordica charantia]	[more]
KAA0057559.1	5.2e-74	78.65	methyl-CpG-binding domain-containing protein 4 [Cucumis melo var. makuwa] >TYK18...	[more]
XP_008451407.1	2.6e-73	78.09	PREDICTED: methyl-CpG-binding domain-containing protein 4 [Cucumis melo]	[more]

BLAST of Lag0002448 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LYB9	1.9e-50	59.73	Methyl-CpG-binding domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 G...	[more]
Q5XEN5	2.1e-46	55.92	Methyl-CpG-binding domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 G...	[more]
Q8LA53	3.9e-24	38.31	Methyl-CpG-binding domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 G...	[more]
Q4PSK1	6.2e-22	38.92	Methyl-CpG-binding domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 G...	[more]
Q9FZP6	2.8e-14	32.08	Putative methyl-CpG-binding domain protein 12 OS=Arabidopsis thaliana OX=3702 GN...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001739	Methyl-CpG DNA binding	SMART	SM00391	TAM_2	coord: 78..151 e-value: 1.5E-10 score: 51.1
IPR001739	Methyl-CpG DNA binding	PFAM	PF01429	MBD	coord: 85..145 e-value: 4.0E-11 score: 42.5
IPR001739	Methyl-CpG DNA binding	PROSITE	PS50982	MBD	coord: 76..146 score: 13.639514
None	No IPR available	GENE3D	3.30.890.10		coord: 78..152 e-value: 3.1E-13 score: 51.3
None	No IPR available	GENE3D	3.30.40.100		coord: 18..69 e-value: 1.8E-6 score: 29.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 163..179
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 160..179
None	No IPR available	PANTHER	PTHR12396:SF10	METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 1-RELATED	coord: 15..173
None	No IPR available	PANTHER	PTHR12396	METHYL-CPG BINDING PROTEIN, MBD	coord: 15..173
None	No IPR available	CDD	cd01396	MeCP2_MBD	coord: 80..152 e-value: 4.34957E-18 score: 72.7905
IPR011124	Zinc finger, CW-type	PFAM	PF07496	zf-CW	coord: 21..67 e-value: 1.5E-10 score: 40.9
IPR011124	Zinc finger, CW-type	PROSITE	PS51050	ZF_CW	coord: 15..70 score: 11.500962
IPR016177	DNA-binding domain superfamily	SUPERFAMILY	54171	DNA-binding domain	coord: 58..151

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0002448.1	Lag0002448.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0008270	zinc ion binding