Lag0002364 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0002364
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Reverse transcriptase domain-containing protein
Location	chr4: 42134679 .. 42135410 (+)
RNA-Seq Expression	Lag0002364
Synteny	Lag0002364

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCAAGATTTGGCCAGGATATTGAACATCTTGAATAACCCTGACCTTAGCACTAGGGTACATGGAGATCAATTGGTCAGAAATCCAAGGAAGAGAAAAGCAAAAGCACTGGTGGTGGAGAAAACGGGAGAAATTGACCGTGCAACTAGCAAGGTTAGGGGGCTCAAATCCACAGATTACACAACAGTTCCTACACCGGACAATAACCATGTCATGAGAACAGACTTACGAAACTTCTTGATCGAAGAAAAATGTAGACTGGCCAAGGTCAAGGTGGAGGTCAAGACTAGAGCCAAGGCTGAAGCTAAAGAGGACAACCTCCCTTGGAAAGTTGAACTTCTGAATCTACAAAAAGAACTTAGGGACCACCAGAAAAACAAGCAATCAAGGGACGTAGAAAAGTCGGACTTAGAAGCTCTGATTTATCAGGCGTTTACCCCGCTGTTCACTGACGAGGTTATGAAGGTTGAGATACCACATAAGTTCAAAGTCCCGACCTTCCTGCAATATGATGGTAAGAAAGATCCTATGGAACATTTACATACTTACAATTCATGGATGGTTTTCTATAATGCTTCAGATGCTATCAAATGTCGTGCTTTTTCCTTCACTTTAACGGGATTAGCCACACTTTGGTATGGAAAACTACCAAGGAAATCCATCGGTTCGTTCAAACATTTAGCCCCAGCCTTCATCATCCAGTTCGTGGGTTCAAGGTTTAATTACTGA

mRNA sequence

ATGGATCAAGATTTGGCCAGGATATTGAACATCTTGAATAACCCTGACCTTAGCACTAGGGTACATGGAGATCAATTGGTCAGAAATCCAAGGAAGAGAAAAGCAAAAGCACTGGTGGTGGAGAAAACGGGAGAAATTGACCGTGCAACTAGCAAGGTTAGGGGGCTCAAATCCACAGATTACACAACAGTTCCTACACCGGACAATAACCATGTCATGAGAACAGACTTACGAAACTTCTTGATCGAAGAAAAATGTAGACTGGCCAAGGTCAAGGTGGAGGTCAAGACTAGAGCCAAGGCTGAAGCTAAAGAGGACAACCTCCCTTGGAAAGTTGAACTTCTGAATCTACAAAAAGAACTTAGGGACCACCAGAAAAACAAGCAATCAAGGGACGTAGAAAAGTCGGACTTAGAAGCTCTGATTTATCAGGCGTTTACCCCGCTGTTCACTGACGAGGTTATGAAGGTTGAGATACCACATAAGTTCAAAGTCCCGACCTTCCTGCAATATGATGGTAAGAAAGATCCTATGGAACATTTACATACTTACAATTCATGGATGGTTTTCTATAATGCTTCAGATGCTATCAAATGTCGTGCTTTTTCCTTCACTTTAACGGGATTAGCCACACTTTGGTATGGAAAACTACCAAGGAAATCCATCGGTTCGTTCAAACATTTAGCCCCAGCCTTCATCATCCAGTTCGTGGGTTCAAGGTTTAATTACTGA

Coding sequence (CDS)

ATGGATCAAGATTTGGCCAGGATATTGAACATCTTGAATAACCCTGACCTTAGCACTAGGGTACATGGAGATCAATTGGTCAGAAATCCAAGGAAGAGAAAAGCAAAAGCACTGGTGGTGGAGAAAACGGGAGAAATTGACCGTGCAACTAGCAAGGTTAGGGGGCTCAAATCCACAGATTACACAACAGTTCCTACACCGGACAATAACCATGTCATGAGAACAGACTTACGAAACTTCTTGATCGAAGAAAAATGTAGACTGGCCAAGGTCAAGGTGGAGGTCAAGACTAGAGCCAAGGCTGAAGCTAAAGAGGACAACCTCCCTTGGAAAGTTGAACTTCTGAATCTACAAAAAGAACTTAGGGACCACCAGAAAAACAAGCAATCAAGGGACGTAGAAAAGTCGGACTTAGAAGCTCTGATTTATCAGGCGTTTACCCCGCTGTTCACTGACGAGGTTATGAAGGTTGAGATACCACATAAGTTCAAAGTCCCGACCTTCCTGCAATATGATGGTAAGAAAGATCCTATGGAACATTTACATACTTACAATTCATGGATGGTTTTCTATAATGCTTCAGATGCTATCAAATGTCGTGCTTTTTCCTTCACTTTAACGGGATTAGCCACACTTTGGTATGGAAAACTACCAAGGAAATCCATCGGTTCGTTCAAACATTTAGCCCCAGCCTTCATCATCCAGTTCGTGGGTTCAAGGTTTAATTACTGA

Protein sequence

MDQDLARILNILNNPDLSTRVHGDQLVRNPRKRKAKALVVEKTGEIDRATSKVRGLKSTDYTTVPTPDNNHVMRTDLRNFLIEEKCRLAKVKVEVKTRAKAEAKEDNLPWKVELLNLQKELRDHQKNKQSRDVEKSDLEALIYQAFTPLFTDEVMKVEIPHKFKVPTFLQYDGKKDPMEHLHTYNSWMVFYNASDAIKCRAFSFTLTGLATLWYGKLPRKSIGSFKHLAPAFIIQFVGSRFNY

Homology

[Close]

BLAST of Lag0002364 vs. NCBI nr
Match: XP_022159109.1 (uncharacterized protein LOC111025548 [Momordica charantia])

HSP 1 Score: 117.9 bits (294), Expect = 1.3e-22
Identity = 68/155 (43.87%), Postives = 93/155 (60.00%), Query Frame = 0


Query: 90  KVKVEVKTRAKAEAKEDNLPWKVELLNLQKEL---RDHQKNKQSRDVEKS-DLEALIYQA 149
           K+K + K+ A   +K D+     E ++L K     R     K+    EK  DLE L+ QA
Sbjct: 22  KIKKQHKSLAPNGSKNDHDNRNSEPISLNKGKPIDRPESSEKRHNQKEKGFDLEELLGQA 81

Query: 150 FTPLFTDEVMKVEIPHKFKVPTFLQYDGKKDPMEHLHTYNSWMVFYNASDAIKCRAFSFT 209
            +P FT+E+M+ ++P KFK+PT   +DG  +P++HL  Y  WM  Y  SDAI+CR FS T
Sbjct: 82  DSP-FTEEIMREKVPPKFKLPTVKPFDGMTEPVDHLDAYREWMDIYGVSDAIRCRVFSTT 141

Query: 210 LTGLATLWYGKLPRKSIGSFKHLAPAFIIQFVGSR 241
           L G A +W+ +L R SI SFK LA AF+ QFVG R
Sbjct: 142 LNGSARIWFRQLKRGSISSFKSLARAFMTQFVGGR 175

[Close]

BLAST of Lag0002364 vs. NCBI nr
Match: XP_022158830.1 (uncharacterized protein LOC111025293 [Momordica charantia])

HSP 1 Score: 116.7 bits (291), Expect = 2.8e-22
Identity = 66/155 (42.58%), Postives = 93/155 (60.00%), Query Frame = 0


Query: 90  KVKVEVKTRAKAEAKEDNLPWKVELLNLQK-ELRDHQKNKQSRDVEKS---DLEALIYQA 149
           K K + K+ A    K D+     E ++L K +  D  ++ + R   K    DLE L+ QA
Sbjct: 117 KTKKQHKSPAPNGGKSDHDDRNSEPISLDKGKPADRPESSEKRHSHKEKGFDLEELLDQA 176

Query: 150 FTPLFTDEVMKVEIPHKFKVPTFLQYDGKKDPMEHLHTYNSWMVFYNASDAIKCRAFSFT 209
            +P FT+E+M+ ++P KFK+PT  Q+D   DP++HL  Y  WM  Y  S+A++CR FS T
Sbjct: 177 DSP-FTEEIMREKVPPKFKLPTVKQFDXTTDPVDHLDAYREWMDIYGVSEAVRCRVFSTT 236

Query: 210 LTGLATLWYGKLPRKSIGSFKHLAPAFIIQFVGSR 241
           L G A +W+ +L R SI SFK LA AF+ QFVG R
Sbjct: 237 LNGSARIWFRQLKRGSISSFKSLARAFVTQFVGGR 270

[Close]

BLAST of Lag0002364 vs. NCBI nr
Match: XP_022150035.1 (uncharacterized protein LOC111018307 [Momordica charantia])

HSP 1 Score: 107.5 bits (267), Expect = 1.7e-19
Identity = 47/89 (52.81%), Postives = 63/89 (70.79%), Query Frame = 0


Query: 152 DEVMKVEIPHKFKVPTFLQYDGKKDPMEHLHTYNSWMVFYNASDAIKCRAFSFTLTGLAT 211
           +E+MKV++P KFK+PT  Q+DG  D ++HL  Y  WM  Y  S+A+KCR FS TL+G A 
Sbjct: 2   EEIMKVKVPPKFKLPTVKQFDGTVDLVDHLDAYREWMDIYGVSEAVKCRVFSTTLSGSAR 61

Query: 212 LWYGKLPRKSIGSFKHLAPAFIIQFVGSR 241
           +W+ +L R SI SFK LA AF+ QF+G R
Sbjct: 62  VWFRQLKRGSISSFKSLAKAFVTQFIGGR 90

[Close]

BLAST of Lag0002364 vs. NCBI nr
Match: XP_022147761.1 (uncharacterized protein LOC111016619 [Momordica charantia])

HSP 1 Score: 102.8 bits (255), Expect = 4.2e-18
Identity = 44/84 (52.38%), Postives = 58/84 (69.05%), Query Frame = 0


Query: 155 MKVEIPHKFKVPTFLQYDGKKDPMEHLHTYNSWMVFYNASDAIKCRAFSFTLTGLATLWY 214
           MK ++P KFK+P   +YDG  DP++HL  Y+ W   Y  ++AI+CR FSFTLTG   +W+
Sbjct: 1   MKEKVPPKFKLPAIKKYDGSTDPIDHLDVYHEWTDIYGITEAIRCRVFSFTLTGSTRIWF 60

Query: 215 GKLPRKSIGSFKHLAPAFIIQFVG 239
            +L RKSI SFK LA AF+ QF G
Sbjct: 61  QQLKRKSISSFKELARAFVTQFAG 84

[Close]

BLAST of Lag0002364 vs. NCBI nr
Match: XP_022158344.1 (uncharacterized protein LOC111024851 [Momordica charantia])

HSP 1 Score: 99.8 bits (247), Expect = 3.5e-17
Identity = 45/86 (52.33%), Postives = 56/86 (65.12%), Query Frame = 0


Query: 155 MKVEIPHKFKVPTFLQYDGKKDPMEHLHTYNSWMVFYNASDAIKCRAFSFTLTGLATLWY 214
           MK +   KFK+P   +YDG  DP++HL  Y  W   Y+  +AI+CR FSFTLTG A  W+
Sbjct: 1   MKEKARPKFKLPAIAEYDGSADPIDHLDAYREWADIYDIREAIRCRVFSFTLTGSARNWF 60

Query: 215 GKLPRKSIGSFKHLAPAFIIQFVGSR 241
            +L R SI SFK LA AF+ QFVG R
Sbjct: 61  RQLKRNSISSFKELAEAFVTQFVGGR 86

[Close]

BLAST of Lag0002364 vs. ExPASy TrEMBL
Match: A0A6J1E1E7 (uncharacterized protein LOC111025548 OS=Momordica charantia OX=3673 GN=LOC111025548 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 6.1e-23
Identity = 68/155 (43.87%), Postives = 93/155 (60.00%), Query Frame = 0


Query: 90  KVKVEVKTRAKAEAKEDNLPWKVELLNLQKEL---RDHQKNKQSRDVEKS-DLEALIYQA 149
           K+K + K+ A   +K D+     E ++L K     R     K+    EK  DLE L+ QA
Sbjct: 22  KIKKQHKSLAPNGSKNDHDNRNSEPISLNKGKPIDRPESSEKRHNQKEKGFDLEELLGQA 81

Query: 150 FTPLFTDEVMKVEIPHKFKVPTFLQYDGKKDPMEHLHTYNSWMVFYNASDAIKCRAFSFT 209
            +P FT+E+M+ ++P KFK+PT   +DG  +P++HL  Y  WM  Y  SDAI+CR FS T
Sbjct: 82  DSP-FTEEIMREKVPPKFKLPTVKPFDGMTEPVDHLDAYREWMDIYGVSDAIRCRVFSTT 141

Query: 210 LTGLATLWYGKLPRKSIGSFKHLAPAFIIQFVGSR 241
           L G A +W+ +L R SI SFK LA AF+ QFVG R
Sbjct: 142 LNGSARIWFRQLKRGSISSFKSLARAFMTQFVGGR 175

[Close]

BLAST of Lag0002364 vs. ExPASy TrEMBL
Match: A0A6J1DWY0 (uncharacterized protein LOC111025293 OS=Momordica charantia OX=3673 GN=LOC111025293 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 1.4e-22
Identity = 66/155 (42.58%), Postives = 93/155 (60.00%), Query Frame = 0


Query: 90  KVKVEVKTRAKAEAKEDNLPWKVELLNLQK-ELRDHQKNKQSRDVEKS---DLEALIYQA 149
           K K + K+ A    K D+     E ++L K +  D  ++ + R   K    DLE L+ QA
Sbjct: 117 KTKKQHKSPAPNGGKSDHDDRNSEPISLDKGKPADRPESSEKRHSHKEKGFDLEELLDQA 176

Query: 150 FTPLFTDEVMKVEIPHKFKVPTFLQYDGKKDPMEHLHTYNSWMVFYNASDAIKCRAFSFT 209
            +P FT+E+M+ ++P KFK+PT  Q+D   DP++HL  Y  WM  Y  S+A++CR FS T
Sbjct: 177 DSP-FTEEIMREKVPPKFKLPTVKQFDXTTDPVDHLDAYREWMDIYGVSEAVRCRVFSTT 236

Query: 210 LTGLATLWYGKLPRKSIGSFKHLAPAFIIQFVGSR 241
           L G A +W+ +L R SI SFK LA AF+ QFVG R
Sbjct: 237 LNGSARIWFRQLKRGSISSFKSLARAFVTQFVGGR 270

[Close]

BLAST of Lag0002364 vs. ExPASy TrEMBL
Match: A0A6J1D7D2 (uncharacterized protein LOC111018307 OS=Momordica charantia OX=3673 GN=LOC111018307 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 8.2e-20
Identity = 47/89 (52.81%), Postives = 63/89 (70.79%), Query Frame = 0


Query: 152 DEVMKVEIPHKFKVPTFLQYDGKKDPMEHLHTYNSWMVFYNASDAIKCRAFSFTLTGLAT 211
           +E+MKV++P KFK+PT  Q+DG  D ++HL  Y  WM  Y  S+A+KCR FS TL+G A 
Sbjct: 2   EEIMKVKVPPKFKLPTVKQFDGTVDLVDHLDAYREWMDIYGVSEAVKCRVFSTTLSGSAR 61

Query: 212 LWYGKLPRKSIGSFKHLAPAFIIQFVGSR 241
           +W+ +L R SI SFK LA AF+ QF+G R
Sbjct: 62  VWFRQLKRGSISSFKSLAKAFVTQFIGGR 90

[Close]

BLAST of Lag0002364 vs. ExPASy TrEMBL
Match: A0A6J1D3B7 (uncharacterized protein LOC111016619 OS=Momordica charantia OX=3673 GN=LOC111016619 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 2.0e-18
Identity = 44/84 (52.38%), Postives = 58/84 (69.05%), Query Frame = 0


Query: 155 MKVEIPHKFKVPTFLQYDGKKDPMEHLHTYNSWMVFYNASDAIKCRAFSFTLTGLATLWY 214
           MK ++P KFK+P   +YDG  DP++HL  Y+ W   Y  ++AI+CR FSFTLTG   +W+
Sbjct: 1   MKEKVPPKFKLPAIKKYDGSTDPIDHLDVYHEWTDIYGITEAIRCRVFSFTLTGSTRIWF 60

Query: 215 GKLPRKSIGSFKHLAPAFIIQFVG 239
            +L RKSI SFK LA AF+ QF G
Sbjct: 61  QQLKRKSISSFKELARAFVTQFAG 84

[Close]

BLAST of Lag0002364 vs. ExPASy TrEMBL
Match: A0A6J1DZ49 (uncharacterized protein LOC111024851 OS=Momordica charantia OX=3673 GN=LOC111024851 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 1.7e-17
Identity = 45/86 (52.33%), Postives = 56/86 (65.12%), Query Frame = 0


Query: 155 MKVEIPHKFKVPTFLQYDGKKDPMEHLHTYNSWMVFYNASDAIKCRAFSFTLTGLATLWY 214
           MK +   KFK+P   +YDG  DP++HL  Y  W   Y+  +AI+CR FSFTLTG A  W+
Sbjct: 1   MKEKARPKFKLPAIAEYDGSADPIDHLDAYREWADIYDIREAIRCRVFSFTLTGSARNWF 60

Query: 215 GKLPRKSIGSFKHLAPAFIIQFVGSR 241
            +L R SI SFK LA AF+ QFVG R
Sbjct: 61  RQLKRNSISSFKELAEAFVTQFVGGR 86

The following BLAST results are available for this feature:

BLAST of Lag0002364 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022159109.1	1.3e-22	43.87	uncharacterized protein LOC111025548 [Momordica charantia]	[more]
XP_022158830.1	2.8e-22	42.58	uncharacterized protein LOC111025293 [Momordica charantia]	[more]
XP_022150035.1	1.7e-19	52.81	uncharacterized protein LOC111018307 [Momordica charantia]	[more]
XP_022147761.1	4.2e-18	52.38	uncharacterized protein LOC111016619 [Momordica charantia]	[more]
XP_022158344.1	3.5e-17	52.33	uncharacterized protein LOC111024851 [Momordica charantia]	[more]

BLAST of Lag0002364 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0002364 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E1E7	6.1e-23	43.87	uncharacterized protein LOC111025548 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]
A0A6J1DWY0	1.4e-22	42.58	uncharacterized protein LOC111025293 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]
A0A6J1D7D2	8.2e-20	52.81	uncharacterized protein LOC111018307 OS=Momordica charantia OX=3673 GN=LOC111018...	[more]
A0A6J1D3B7	2.0e-18	52.38	uncharacterized protein LOC111016619 OS=Momordica charantia OX=3673 GN=LOC111016...	[more]
A0A6J1DZ49	1.7e-17	52.33	uncharacterized protein LOC111024851 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]

BLAST of Lag0002364 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0002364.1	Lag0002364.1	mRNA