Lag0002295 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0002295
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Protodermal factor 1 like
Location	chr4: 41387552 .. 41388237 (-)
RNA-Seq Expression	Lag0002295
Synteny	Lag0002295

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGACTCCTCGTTTACTCAATCTTCTTCTCATTCTCTACTTCGCCGCCGCCGCTGCAGAAGCAGCATCAACGCGCCGCCCTGGTTTTCTCTTCTCAAGAACCAGAGGAAGATGCACTCCACAGTAAGATCTCCATTTCCTTTCTCTAAAATCCGCATTCAATCCAAATTACTCAACGAGACTGCAAAATTAGGTCGAAATCCTCTCATAAACTCTGAAATCAATTGAGATTTTCTTGTAGGCATTTTCACAAACACATCGACGCATTTGCATTTGCATTTGTATTAGATTAGCCTAGGTTTGTTTTCTTTTTCCCTGTCATCGATCGGATTGAGACCGATTCGATTATTTGAACCGTCCAGATTCTGGAGTAGTGGGAGAGAGGCTTGGCCAAGGATGGCGCCAGAGTCGGCGACGGTGGCGAAAATTTTCGGATCGAGAGCTCACGAACGGTACGGGTCTGAGATGACGCTAATGGAGGCGGCGGCGGATGAGGAAGAGGAGGGGTTCGGTAGAGTTGTGAAGGAGGCAACTGCAGCATTGTTGAATTCGTATGCGAGAAGAAGGGAGTTTCCATATTCGGCTTGGGAGGTGAAGACTCTGTTCATCAAAGCTTTGGTGTCTAAAGAGGCTGCTGCTCTTCAGTCTCAACGTTTTGCTCTAGCTAATCAGCTCTGTAATTAA

mRNA sequence

ATGGAGACTCCTCGTTTACTCAATCTTCTTCTCATTCTCTACTTCGCCGCCGCCGCTGCAGAAGCAGCATCAACGCGCCGCCCTGGTTTTCTCTTCTCAAGAACCAGAGGAAGATGCACTCCACAATTCTGGAGTAGTGGGAGAGAGGCTTGGCCAAGGATGGCGCCAGAGTCGGCGACGGTGGCGAAAATTTTCGGATCGAGAGCTCACGAACGGTACGGGTCTGAGATGACGCTAATGGAGGCGGCGGCGGATGAGGAAGAGGAGGGGTTCGGTAGAGTTGTGAAGGAGGCAACTGCAGCATTGTTGAATTCGTATGCGAGAAGAAGGGAGTTTCCATATTCGGCTTGGGAGGTGAAGACTCTGTTCATCAAAGCTTTGGTGTCTAAAGAGGCTGCTGCTCTTCAGTCTCAACGTTTTGCTCTAGCTAATCAGCTCTGTAATTAA

Coding sequence (CDS)

ATGGAGACTCCTCGTTTACTCAATCTTCTTCTCATTCTCTACTTCGCCGCCGCCGCTGCAGAAGCAGCATCAACGCGCCGCCCTGGTTTTCTCTTCTCAAGAACCAGAGGAAGATGCACTCCACAATTCTGGAGTAGTGGGAGAGAGGCTTGGCCAAGGATGGCGCCAGAGTCGGCGACGGTGGCGAAAATTTTCGGATCGAGAGCTCACGAACGGTACGGGTCTGAGATGACGCTAATGGAGGCGGCGGCGGATGAGGAAGAGGAGGGGTTCGGTAGAGTTGTGAAGGAGGCAACTGCAGCATTGTTGAATTCGTATGCGAGAAGAAGGGAGTTTCCATATTCGGCTTGGGAGGTGAAGACTCTGTTCATCAAAGCTTTGGTGTCTAAAGAGGCTGCTGCTCTTCAGTCTCAACGTTTTGCTCTAGCTAATCAGCTCTGTAATTAA

Protein sequence

METPRLLNLLLILYFAAAAAEAASTRRPGFLFSRTRGRCTPQFWSSGREAWPRMAPESATVAKIFGSRAHERYGSEMTLMEAAADEEEEGFGRVVKEATAALLNSYARRREFPYSAWEVKTLFIKALVSKEAAALQSQRFALANQLCN

Homology

[Close]

BLAST of Lag0002295 vs. NCBI nr
Match: XP_038899192.1 (uncharacterized protein LOC120086555 [Benincasa hispida])

HSP 1 Score: 242.3 bits (617), Expect = 2.7e-60
Identity = 132/158 (83.54%), Postives = 137/158 (86.71%), Query Frame = 0


Query: 1   METPRLLNLLLILY-FA---AAAAEAASTRRPGFLFSRTRGRCTPQFWSSGREAWPRMAP 60
           M++ RL NLLL+L  FA   A AAEA STRRPGFLFSRTRGRCT QFWSSGREAWPRMAP
Sbjct: 1   MDSSRLFNLLLLLLCFAGAVAVAAEAGSTRRPGFLFSRTRGRCTAQFWSSGREAWPRMAP 60

Query: 61  ESATVAKIFGSRAHERYGSEMTLME------AAADEEEEGFGRVVKEATAALLNSYARRR 120
           ESATVAKIFGSRAHERYGSEMTLME      AAADEEEE FGRVVKEAT ALLNSYARRR
Sbjct: 61  ESATVAKIFGSRAHERYGSEMTLMEAAAATVAAADEEEEAFGRVVKEATVALLNSYARRR 120

Query: 121 EFPYSAWEVKTLFIKALVSKEAAALQSQRFALANQLCN 149
           EFPYSAWEVKTLFIKALVSKEAA LQS+RFA AN+ CN
Sbjct: 121 EFPYSAWEVKTLFIKALVSKEAAVLQSRRFAFANESCN 158

[Close]

BLAST of Lag0002295 vs. NCBI nr
Match: XP_004148954.1 (uncharacterized protein LOC101220310 [Cucumis sativus] >KGN44734.1 hypothetical protein Csa_015820 [Cucumis sativus])

HSP 1 Score: 241.1 bits (614), Expect = 6.0e-60
Identity = 128/151 (84.77%), Postives = 132/151 (87.42%), Query Frame = 0


Query: 1   METPRLLNLLLILYFAAAAAEAASTRRPGFLFSRTRGRCTPQFWSSGREAWPRMAPESAT 60
           M++ R LNLLL+L FAAA AE AS RRPGFLFSRT GRCT QFWSS  EAWPRMAPESAT
Sbjct: 1   MDSSRFLNLLLLLCFAAATAEVASARRPGFLFSRTTGRCTAQFWSSRSEAWPRMAPESAT 60

Query: 61  VAKIFGSRAHERYGSEMTLMEAAA---DEEEEGFGRVVKEATAALLNSYARRREFPYSAW 120
           VAKIFGSRAHERYGSEMTLMEAAA   DEEEE FGRVVKEATAALLNSY RRR FPYSAW
Sbjct: 61  VAKIFGSRAHERYGSEMTLMEAAAGAGDEEEEVFGRVVKEATAALLNSYTRRRVFPYSAW 120

Query: 121 EVKTLFIKALVSKEAAALQSQRFALANQLCN 149
           EVKTLFIKALVSKEAA LQSQRFA AN+ CN
Sbjct: 121 EVKTLFIKALVSKEAAVLQSQRFAFANESCN 151

[Close]

BLAST of Lag0002295 vs. NCBI nr
Match: XP_022991546.1 (uncharacterized protein LOC111488125 [Cucurbita maxima])

HSP 1 Score: 235.0 bits (598), Expect = 4.3e-58
Identity = 127/154 (82.47%), Postives = 136/154 (88.31%), Query Frame = 0


Query: 1   METPRLLNLLLILYFAAAAAEAASTRRPGFLFSRTRGRCTPQFWSSGREAWPRMAPESAT 60
           MET RLL+ LL+LYFAAAA EAA +RRPGFLFSRTRGRCTP+FWSS REAWPRMAPESAT
Sbjct: 1   MET-RLLSFLLLLYFAAAAGEAALSRRPGFLFSRTRGRCTPEFWSSRREAWPRMAPESAT 60

Query: 61  VAKIFGSRAHERYGSEMTLMEAAA------DEEEEGFGRVVKEATAALLNSYARRREFPY 120
           VAKIFGSRAHERYGSEMTL+ AA       +EEEE FGRVVKEATAALLNSYA RR+FPY
Sbjct: 61  VAKIFGSRAHERYGSEMTLLAAATVAVADEEEEEEAFGRVVKEATAALLNSYA-RRDFPY 120

Query: 121 SAWEVKTLFIKALVSKEAAALQSQRFALANQLCN 149
           +AWEVKTL IKALVSKEAAALQSQRFA AN+ CN
Sbjct: 121 AAWEVKTLLIKALVSKEAAALQSQRFAFANESCN 152

[Close]

BLAST of Lag0002295 vs. NCBI nr
Match: XP_022953859.1 (uncharacterized protein LOC111456270 [Cucurbita moschata])

HSP 1 Score: 233.4 bits (594), Expect = 1.2e-57
Identity = 127/155 (81.94%), Postives = 136/155 (87.74%), Query Frame = 0


Query: 1   METPRLLNLLLILYFA-AAAAEAASTRRPGFLFSRTRGRCTPQFWSSGREAWPRMAPESA 60
           MET RLL+ LL+LYFA AAA EAA +RRPGFLFSRTRGRCTP+FWSS REAWPRMAPESA
Sbjct: 1   METFRLLSYLLLLYFATAAAGEAALSRRPGFLFSRTRGRCTPEFWSSRREAWPRMAPESA 60

Query: 61  TVAKIFGSRAHERYGSEMTLMEAAA------DEEEEGFGRVVKEATAALLNSYARRREFP 120
           TVAKIFGSRAHERYGSEMTL+ AA       +EEEE FGRVVKEATAALLNSYA RR+FP
Sbjct: 61  TVAKIFGSRAHERYGSEMTLLAAATVALADEEEEEEAFGRVVKEATAALLNSYA-RRDFP 120

Query: 121 YSAWEVKTLFIKALVSKEAAALQSQRFALANQLCN 149
           Y+AWEVKTL IKALVSKEAAALQSQRFA AN+ CN
Sbjct: 121 YAAWEVKTLLIKALVSKEAAALQSQRFAFANESCN 154

[Close]

BLAST of Lag0002295 vs. NCBI nr
Match: XP_023548905.1 (uncharacterized protein LOC111807417 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 229.9 bits (585), Expect = 1.4e-56
Identity = 126/155 (81.29%), Postives = 134/155 (86.45%), Query Frame = 0


Query: 1   METPRLLNLLLILYFA-AAAAEAASTRRPGFLFSRTRGRCTPQFWSSGREAWPRMAPESA 60
           MET RLL+ LL+LYFA AAA EAA +R PGFLFSRTRGRCTP+FWSS REAWPRMAPESA
Sbjct: 1   METFRLLSYLLLLYFATAAAGEAALSRPPGFLFSRTRGRCTPEFWSSRREAWPRMAPESA 60

Query: 61  TVAKIFGSRAHERYGSEMTLMEAAA------DEEEEGFGRVVKEATAALLNSYARRREFP 120
           TVAKIFGSRAHERYGSEMTL+ AA       +EEEE FGRVVKEATAALLNSYA RR+FP
Sbjct: 61  TVAKIFGSRAHERYGSEMTLLAAATVAVADEEEEEEAFGRVVKEATAALLNSYA-RRDFP 120

Query: 121 YSAWEVKTLFIKALVSKEAAALQSQRFALANQLCN 149
           YSAWEVKTL IKALVSKEAAALQS RFA AN+ CN
Sbjct: 121 YSAWEVKTLLIKALVSKEAAALQSHRFAFANESCN 154

The following BLAST results are available for this feature:

BLAST of Lag0002295 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038899192.1	2.7e-60	83.54	uncharacterized protein LOC120086555 [Benincasa hispida]	[more]
XP_004148954.1	6.0e-60	84.77	uncharacterized protein LOC101220310 [Cucumis sativus] >KGN44734.1 hypothetical ...	[more]
XP_022991546.1	4.3e-58	82.47	uncharacterized protein LOC111488125 [Cucurbita maxima]	[more]
XP_022953859.1	1.2e-57	81.94	uncharacterized protein LOC111456270 [Cucurbita moschata]	[more]
XP_023548905.1	1.4e-56	81.29	uncharacterized protein LOC111807417 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Lag0002295 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR039923	Protodermal factor 1	PANTHER	PTHR33210	PROTODERMAL FACTOR 1	coord: 7..148
None	No IPR available	PANTHER	PTHR33210:SF16	OS04G0517000 PROTEIN	coord: 7..148

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0002295.1	Lag0002295.1	mRNA