Lag0002110 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0002110
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Unknown protein
Location	chr4: 39397404 .. 39398230 (-)
RNA-Seq Expression	Lag0002110
Synteny	Lag0002110

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCACGTGGCAATTGGACCCAAGCCCAAGCCCATATGAGGTCCATCAAACTCTATAAATAGAGAAGGCCACCATTCATTTTAAGGGGATTCAGATTCGGGGATTCAGATTTGGAGACAGAGTCAGAGAACTCAGAGTCCAGAGCATTCTGCCAAGAGTCCAGAGTCGGCAGGCCGATCATCCAAGAGGATCAACAAGCTAACAAGCCGATCCAACAGATCATCAAGCCAACAGGCCGATCCAAGAGATCAACAAGCCAACCGACCGATCAAGAAGATCAACAAGTCAGCAGGCCGATCATCCAAGAGATCAACAAGCCAACCGACCGATCAAGAAGATCAACAAGTCAGCAGGCCGATCATCCAAGAGGATCAACAAGCTAACAAGCCGATCCAACAGATCGTCAAGCCAACAGGCTGATCCAAGAGATCAACAAGCCAACCGACCGATCAAGAAGATCAACAAGTCAGCAGGCCGATCATCCAAGAGATCAACAAGCCAACCGACCGATCAAGAAGATCAACAAGTCAGCAGACTGATCATCCAGGAAGATCAACAAACCAACAAGCCGATCCAAGAGATCATCACGCCAACAGGCCGATCATCCAAGAAGATCAACAAGCCCAATAGGTCGATCCAGGAGATCATCAACCTAACAGGCCGATCATCCAAGAAGATCAACAAGTCCAATAGGTCGATCCAGGAGATCATCAACCTAACATATCGATCATCCAAGAAGATCAACAAGCCAATAAGCCGATCCAAGAGATCATCAAGCCAACAGGCCGATCCAAGAGATCATCAACCTAGCAAGTTGATCATCTAA

mRNA sequence

ATGCCACGTGGCAATTGGACCCAAGCCCAAGCCCATATGAGGCCGATCCAAGAGATCAACAAGCCAACCGACCGATCAAGAAGATCAACAAGTCAGCAGGCCGATCATCCAAGAGATCAACAAGCCAACCGACCGATCAAGAAGATCAACAAGTCAGCAGGCCGATCATCCAAGAGGATCAACAAGCTAACAAGCCGATCCAACAGATCGTCAAGCCAACAGGCTGATCCAAGAGATCAACAAGCCAACCGACCGATCAAGAAGATCAACAAGTCAGCAGGCCGATCATCCAAGAGATCAACAAGCCAACCGACCGATCAAGAAGATCAACAAGTCAGCAGACTGATCATCCAGGAAGATCAACAAACCAACAAGCCGATCCAAGAGATCATCACGCCAACAGGCCGATCATCCAAGAAGATCAACAAGCCCAATAGGTCGATCCAGGAGATCATCAACCTAACAGGCCGATCATCCAAGAAGATCAACAAGTCCAATAGGTCGATCCAGGAGATCATCAACCTAACATATCGATCATCCAAGAAGATCAACAAGCCAATAAGCCGATCCAAGAGATCATCAAGCCAACAGGCCGATCCAAGAGATCATCAACCTAGCAAGTTGATCATCTAA

Coding sequence (CDS)

ATGCCACGTGGCAATTGGACCCAAGCCCAAGCCCATATGAGGCCGATCCAAGAGATCAACAAGCCAACCGACCGATCAAGAAGATCAACAAGTCAGCAGGCCGATCATCCAAGAGATCAACAAGCCAACCGACCGATCAAGAAGATCAACAAGTCAGCAGGCCGATCATCCAAGAGGATCAACAAGCTAACAAGCCGATCCAACAGATCGTCAAGCCAACAGGCTGATCCAAGAGATCAACAAGCCAACCGACCGATCAAGAAGATCAACAAGTCAGCAGGCCGATCATCCAAGAGATCAACAAGCCAACCGACCGATCAAGAAGATCAACAAGTCAGCAGACTGATCATCCAGGAAGATCAACAAACCAACAAGCCGATCCAAGAGATCATCACGCCAACAGGCCGATCATCCAAGAAGATCAACAAGCCCAATAGGTCGATCCAGGAGATCATCAACCTAACAGGCCGATCATCCAAGAAGATCAACAAGTCCAATAGGTCGATCCAGGAGATCATCAACCTAACATATCGATCATCCAAGAAGATCAACAAGCCAATAAGCCGATCCAAGAGATCATCAAGCCAACAGGCCGATCCAAGAGATCATCAACCTAGCAAGTTGATCATCTAA

Protein sequence

MPRGNWTQAQAHMRPIQEINKPTDRSRRSTSQQADHPRDQQANRPIKKINKSAGRSSKRINKLTSRSNRSSSQQADPRDQQANRPIKKINKSAGRSSKRSTSQPTDQEDQQVSRLIIQEDQQTNKPIQEIITPTGRSSKKINKPNRSIQEIINLTGRSSKKINKSNRSIQEIINLTYRSSKKINKPISRSKRSSSQQADPRDHQPSKLII

Homology

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BLAST of Lag0002110 vs. NCBI nr
Match: XP_042887401.1 (probable hemoglobin and hemoglobin-haptoglobin-binding protein 3 [Penaeus japonicus])

HSP 1 Score: 55.1 bits (131), Expect = 8.6e-04
Identity = 50/132 (37.88%), Postives = 76/132 (57.58%), Query Frame = 0


Query: 32  QQADHPRDQQANRPIKKINKSAGRSSKRINKLTSRSNRSSSQQADPRDQQANRPI-KKIN 91
           QQAD P DQQ NRP    ++   R + R      ++N+ ++QQA P DQQ +RP  ++ N
Sbjct: 58  QQADRPTDQQTNRP---TDQQTSRPTDR------QTNKPTNQQAKPTDQQTDRPTNRQTN 117

Query: 92  KSAGRSSKRSTSQPTDQE-----DQQVSRLIIQE-----DQQTNKPIQEIITPTGRSSKK 151
           K   + +K  T++PTDQ+     +QQ ++L  Q+     DQQT+KP  E    TGR+SK 
Sbjct: 118 KPTDQQTK--TNKPTDQQTNRPTNQQTNKLTDQQINKPTDQQTDKPPTESARATGRNSKG 177

Query: 152 INKPNRSIQEII 153
           ++  +  I+ II
Sbjct: 178 VSLTDNVIKNII 178

The following BLAST results are available for this feature:

BLAST of Lag0002110 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_042887401.1	8.6e-04	37.88	probable hemoglobin and hemoglobin-haptoglobin-binding protein 3 [Penaeus japoni...	[more]

BLAST of Lag0002110 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0002110 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0002110 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 179..210
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 179..202
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..144
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 56..80
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 95..144
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 18..45

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0002110.1	Lag0002110.1	mRNA