Lag0001879 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0001879
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
Descriptionzf-RVT domain-containing protein
Locationchr4: 36472143 .. 36476907 (+)
RNA-Seq ExpressionLag0001879
SyntenyLag0001879
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGCTTCAAAGTCGCAGTCCTTCTCAAAGGGAAGATGTGGTGATTTGGAAGCATGACAAATCAAGGTTGTTCTCAGTTAAGTCGACTTTGAAGGCTATTCAATCTAATAGAAGAGTTTTGGAGGCCGATCTGTGTGACCAGTTATGGAAAGGAAATACTCCCAAAAAGGTGAAATTTTTCTTATGGTCAATGGCTCATACAAGCACTAACACAATGGCAGAATCCAAAGGAGGCTCCCTAGTATGATCTCCCGACCTATTTGACGTTTTATGTGCAGTAAAAGCGAGGAATCTCTCATTCATTTGTTCATTCCTTGCAAGTTTGTTGGTAAAGTTTGGAATGCCTTCAGTAATGTGTTCGGATGGCAAGGTTGCAAACTGAACTGCATGAAGACTCGGTTGGCTAAAATCCTTCCAGGTTTTTCTTAAAGGACAAAGCGAGAGAGTGATTTGGAAGAATCTTGCCAGAGCAATCTCGTGGCCTCTTTGGAAGGAAAGGAATTCGAGAGTCTTCTCAGATAAGAAATCTTCTTTATCTCTTTTGTGACCTTGAATGGTTTACGATCTCTATTTCGAATGCCTTACATAAAGCTTTTTGTAATTACACTATAGACACTATCAACTTAGATTGAAAGGTCATTTTGTAATCCTTCCTTCGAGAGAGGGATGTTTTGTTGTAGCTCCTTTCCTTTTGAATATATCTAATGGTTTCCCATCTCTAAAAATAAATAAATAAAAATAAAAACCTAGGGTTGGGATAGGAATTTAGGCTAAGTCAAGGAATTTATTCCTTCACTCTTATCCCTAATCAATCAAGGGAATTTGTACCTTGACATACCGCATTATAACTAGGGATTGTCTATTTTGGATAGGGTGGGTCTCAAGAGGAATTTCTGTCAATCACTACTATTCGCATAATTTCTTTTCTAAATATTAGGATAATTGCAGTGGGTGGTAAATTGGACCAAATTAATAGTAAATATAGTATAATATAAAAAAAATTGTAAATATAGCAAAATCTATCCGAATATATTAGTGATAGACACTAATAGACTCTGATTAATTAGAATCTATTTGATAAATTTCGATTATCAGAGTTTATCAGCGATAGACTCTGATTAATCAGAATCTCTACTCATAGACTTCAATTATCAGAGTCTATAAATGTCTATCGTTGATAAACTCATTGATAGACTCTAGTTAATCAAAATCTATCAGTGACTATCATTGATAGACTTTGATTAGTGATAGTCACTGATAGATTTTGATTAATCGAAGTCTATCAGCGATAGACACTGGTATACTTTGAATAATCAGAGTCTATCAGTAATAGACACGGATAGAATCTGACAACAACTTTTTGGTCTTGTACAATTAATTTTGCTATATTTTGCAATTAGTTTGCAACTGTGCTATAGTTATTATTAATTTGGTTCAATTTGTCATCTATGCAACTACCCCTAAATATTAATCTCTTAAATTTCAAATTGAAAACTTATTCTAGGTTAAAGGTAATTAAAACGTTAACATAAAAAATCATTTCTTTTGTTTTATTAATCAGCAACAACCACATATAATTAAGAAATATATTTTTTAACATTCAATCTTCCTAAGAAAAAATAGTAAAAAAAAAAAAACGTTTTTAGTATTAGGTCATGTTTTATCAAGCATATCTAAATATATTGGTTTTGTCAACTTTAACTTTACATAAAAATCAATTTAAGTTAATATAGTTAAATTTCTATAATAGGATCATCCATAATGTTACCCCATGCTATATAAACTTTAAGACATTAAATTTAGTGTAGATTTTAAAAACAAATTGCCTCACATTTTGGACTAGGTGACCTTTCGTGGGAGAAGGGACTTTCAGGTTTGGGTTCCCGACCCAACTAAGGGATACTCTTGTAGTTCATTTTTCTATATCTTTTATTCCCTTTCTCCCTCTTAGAGCGTCTATTCTCCTCTATTTGGAAAGTAAAAATTCCTAAGAAAGTTAAACTCTTTGTCGGACAAGTTTTGCATCAAGAGTGAATACTCAAGACCAACTCCAAAGACATTTTGTATTGCATCCGTAATGGTTCGTGTTCTGTGCAAGAAACAAAAGGAAGATCTTAACCATTTATTGTAGGATGACAGTTCGCCGCCACCTTTTGGAGTCAAATTTTCAAGTCTCTAGCTATGGTGTGAGATCGTAATAGAGTCGATTGTTTTGTGTTTGAGGAGGATTTTCACAACCTACTTTTTGGAATAAATGAAGAATTCTATGGGAGGATCTTTAGAGGAGTTGAGGGAGGAGTTTTAGGAGGAGCTTTGGGAGTTGACGGGGTTTAATTGTGGGAAAAATACACTTTTGATTCATGAGGTTTGGGTTAGGTTTTATTTTGGTCCCTAAGTTTTAAAAATCAACATTTTAGCCCCTTAAGTTTGGATTTCAAAAATTAATAATTTTTAAATAATATATTAAAATAATAAAATATTATTTTTTTAATATCTTTATTTCTTTCTCTCTTCTTCTTCCCTCCCTCTCCTTCCTTTCTTCTCATTTCTTTTAATTTTTTTTTTTAAAAAAAATAGAAAAGTGGGGGAGGAAGGAGGAGCTCCCTCCCACTCTTTTCTATTTAAGTTGGGTGGTGGTGAAGAAGGTGAAAAAGAAAGAGAAAGAAAGAAAGATTGTGAAAAAGAAAGAGAAAAAAAGAAAGATATTGGAAAATAATAATATTTTTATTATTTTAATATATTTAAAAAAATTAATAAAAAATTATTCTCACGTCAGCAATTCATTATTATTTAACGAAAAAATGGACGACCAAAATGAAATGAAATTTAAACCTCAAGAACTAAAATATCGAGTTTTAAAATTTAAGGACCAAAATGAAACCTAATCCAAACCTTTAAGACCAAAAGCTTATTTTTCTCTTTAATTTTTCATTATATGCGTTCTTTAATCGAGCCTTTTGTAATCATCAGCATGATCACATTCTCCTGAAAATCAGACCAATCTTGTAATTGTGTAAGATCTTTTTTTTTTTTTGTTTTGGTGGGTCTATATTTTTTATACCCTTGTACATTCTTTAATTTTCCTCGATGAAAATTCGATTTCTGGCCAAAAAAAATATATTATTACTTTAAAAAACATTACAAACCCTTGACCAAATTTCAAGGATAAAAATTTGATTTGAATTTTAAAATGTGTATTAAGAAACAGATAATAATGAATCAAAAAATGATTGGTAATAAAATTTGGTGGAGGGGTTCTATGTTTACCCTTTTTTTACAAACTTTATGTCAATACCAGTTGAGTTACGCTCATGTTAGCGGATCGATTTTTACCTTAAATTTTCAACTTCATCAATTTGTATATTAAACTATAAGTATGGTTAACTTTTAGCTTAAATAAGTGTGGCAAATTTCCAAGTTTACTTTCTAATAATTTCCATTAGAAATACTGTTAAAAAAATTAATTTTTATTGTATGTAGAAACATCTTCTAATACAAAATTGATGATTTCAAAGAAAACCCACACTAGAACTTAATTTTTAATAAAATGGGTAAGTTCTGAAATAATTGTTCAATAGTTGATCTAGTTCATTGAGCAGTTTGTATCTCTTCTTTGTTTTTTTTTTTTTTTAATTCAACAACAATTAGAGTGAGAGATTAAACCTCTGACCTCTTAATCAAAATTAAATACCAATTACCGTTGAACTCCGCTCTTTTTGGCTTAATTTGTGGAATTTTTTGAAATTAGTGTGTTTTGGATCATTTTTTACTTATCTTTTGTTACTATTAACGGGTGAATTTAGAAGTAATTAAAGGGTAAGAATTGCCACTCTTATTGAAGTCTAAAGAGTTAAACGTGGGAACTCTTGTCAAGTTTCCTGTCTCTCTTTCAACACCTACGACTAAACACGGGTCTTCCTTTTGTGAGCTTGGTTTTTTGTATGTCCTTGTATTCTTGCATTTTTTTTTTCAATGAAAGCTGATTCTTTATAACCCAAAAAAAACACAAAACAAAACAAAAAAAAAACTCCATCTAATTATTTCGTGTTGGGGTCATTTTTCTTTTTATCACACTCGGTATTTAGAGGTTTGTTTGACTCCATTATTTAGGTAGTCTTTTTGTGTACCCATTGTATGTTATTTCATTTCTTCTCAAAGAAAGCTTGGTTTCTACTAACAAGAAATGATGAAATTGAAAGCTTAGCATAAAAGTTGATGCACCATGTCAAGTTTAAGATACAAATTGATTTTTTTTCCCTAAAACCTATCTTTAAAATAAATAAAAAAATAAATAATAAAAAAAAAATCAAACCAAAGTCATTAGATTACTTACCAAACAGGTGTTTAAATTTTTCATAGAACACCCCGTTTTCCAGATGGGAAAAATACAATGTTCAAAAGAAACGAAGGGGAATCCTAAAAGGTTTTGATTTGAGTATCATACCAATTAACTATCTTTCTCTCCCTAAATCACAAAAGAAGTCTCTAATTAATCTCTATCAGTCATTAAATGATAATTTGTACAAATTTACATGTAGAGATTAGCTTCAATGCTTTCATTTAATCATCCGAAACTCGCATATTATATCGTTTTGCTAACCTGCGGGCAGTTCCATCAGCCATTACACTTTCCACAATCTCATATTTCTTGTAGTTTCCTTTCAGTGCTTCTTGCTGCTGCTTTGCAAGCTTCTCCTCTTCCACCAGTTGTTGCTGCAAAGGAATGGGAGGAACCTCTGTTAACAACTATCCAACGAGGCTAA

mRNA sequence

ATGGTGCTTCAAAGTCGCAGTCCTTCTCAAAGGGAAGATGTGGTGATTTGGAAGCATGACAAATCAAGGTTGTTCTCAGTTAAGTCGACTTTGAAGGCTATTCAATCTAATAGAAGAGTTTTGGAGGCCGATCTGTGTGACCAGTTATGGAAAGGAAATACTCCCAAAAAGGTGAAATTTTTCTTATGTAAAAGCGAGGAATCTCTCATTCATTTGTTCATTCCTTGCAAGTTTGTTGGTAAAGTTTGGAATGCCTTCAGTAATGTGTTCGGATGGCAAGGTTGCAAACTGAACTGCATGAAGACTCGGTTGGCTAAAATCCTTCCAGTGCTTCTTGCTGCTGCTTTGCAAGCTTCTCCTCTTCCACCAGTTGTTGCTGCAAAGGAATGGGAGGAACCTCTGTTAACAACTATCCAACGAGGCTAA

Coding sequence (CDS)

ATGGTGCTTCAAAGTCGCAGTCCTTCTCAAAGGGAAGATGTGGTGATTTGGAAGCATGACAAATCAAGGTTGTTCTCAGTTAAGTCGACTTTGAAGGCTATTCAATCTAATAGAAGAGTTTTGGAGGCCGATCTGTGTGACCAGTTATGGAAAGGAAATACTCCCAAAAAGGTGAAATTTTTCTTATGTAAAAGCGAGGAATCTCTCATTCATTTGTTCATTCCTTGCAAGTTTGTTGGTAAAGTTTGGAATGCCTTCAGTAATGTGTTCGGATGGCAAGGTTGCAAACTGAACTGCATGAAGACTCGGTTGGCTAAAATCCTTCCAGTGCTTCTTGCTGCTGCTTTGCAAGCTTCTCCTCTTCCACCAGTTGTTGCTGCAAAGGAATGGGAGGAACCTCTGTTAACAACTATCCAACGAGGCTAA

Protein sequence

MVLQSRSPSQREDVVIWKHDKSRLFSVKSTLKAIQSNRRVLEADLCDQLWKGNTPKKVKFFLCKSEESLIHLFIPCKFVGKVWNAFSNVFGWQGCKLNCMKTRLAKILPVLLAAALQASPLPPVVAAKEWEEPLLTTIQRG
Homology
[Close]
BLAST of Lag0001879 vs. NCBI nr
Match: KAG5619486.1 (hypothetical protein H5410_004704 [Solanum commersonii])

HSP 1 Score: 59.3 bits (142), Expect = 3.1e-05
Identity = 32/94 (34.04%), Postives = 47/94 (50.00%), Query Frame = 0 

Query: 4   QSRSPSQREDVVIWKHDKSRLFSVKSTLKAIQSNRRVLEADLCDQLWKGNTPKKVKFF-- 63
           Q++S +  ED ++W  DK   F VK+  K +  +    E      +WKG  P KV  F  
Sbjct: 498 QAKSLNFEEDKLLWSLDKGGKFRVKAAYKMLNISTETKEWWPWKMIWKGRIPHKVACFTW 557

Query: 64  -LCKSEESLIHLFIPCKFVGKVWNAFSNV--FGW 93
            +    E++ HLF+ CK  GK+W  F N+   GW
Sbjct: 558 LVATETETVNHLFLQCKVTGKLWQWFINLRGIGW 591

[Close]
BLAST of Lag0001879 vs. NCBI nr
Match: XP_015946048.1 (uncharacterized protein LOC107471121 [Arachis duranensis])

HSP 1 Score: 57.8 bits (138), Expect = 8.9e-05
Identity = 34/119 (28.57%), Postives = 52/119 (43.70%), Query Frame = 0 

Query: 6   RSPSQREDVVIWKHDKSRLFSVKSTLKAIQSN---RRVLEADLCDQLWKGNTPKKVKFF- 65
           R  + RED+V+WK+D+  +FS  S ++ +Q     +          +WKG  P KV+ F 
Sbjct: 86  RLVNNREDIVVWKYDRLGIFSTNSFVQVLQEGMLAKDTTSYSFTHSIWKGLVPPKVELFT 145

Query: 66  ----------------------------LCKSE-ESLIHLFIPCKFVGKVWNAFSNVFG 92
                                       LC  + E + HLF+ C F  +VWNA+ +VFG
Sbjct: 146 WFVLIGRVNTKERLSRFGILNQVDMRCVLCNRDIEQVHHLFLGCDFAWQVWNAWISVFG 204

[Close]
BLAST of Lag0001879 vs. NCBI nr
Match: XP_016206012.1 (uncharacterized protein LOC107646336 [Arachis ipaensis] >XP_025661010.1 uncharacterized protein LOC112756607 [Arachis hypogaea])

HSP 1 Score: 57.4 bits (137), Expect = 1.2e-04
Identity = 35/124 (28.23%), Postives = 54/124 (43.55%), Query Frame = 0 

Query: 1   MVLQSRSPSQREDVVIWKHDKSRLFSVKSTLKAIQ---SNRRVLEADLCDQLWKGNTPKK 60
           ++L  +  ++RED VIWK D++ +FS KS +  +Q       +        +W+G  P +
Sbjct: 10  VLLTVKLTTEREDRVIWKFDRTGVFSTKSFVHVMQEAVQQEEITSYSFTSAVWRGFVPPR 69

Query: 61  VKFF-----------------------------LC-KSEESLIHLFIPCKFVGKVWNAFS 92
           V+ F                             LC K+ ES  HLF+ C+   KVWNA+ 
Sbjct: 70  VELFAWFVLIERVNTKERLSRLGVIDQHDTMCALCSKANESAFHLFVSCEITWKVWNAWL 129

[Close]
BLAST of Lag0001879 vs. NCBI nr
Match: XP_016172465.1 (uncharacterized protein LOC107614851 [Arachis ipaensis])

HSP 1 Score: 57.0 bits (136), Expect = 1.5e-04
Identity = 34/118 (28.81%), Postives = 55/118 (46.61%), Query Frame = 0 

Query: 9   SQREDVVIWKHDKSRLFSVKSTLKAIQSNR---RVLEADLCDQLWKGNTPKKVKFF---- 68
           + RED VIWK+D+  +FS  S ++ +Q  R    V   +    +WKG  P++V+ F    
Sbjct: 97  NHREDRVIWKYDRQSVFSTNSFVQVMQVERLPEEVTSYNFTSTIWKGLVPQRVELFAWFV 156

Query: 69  -------------------------LCKSE-ESLIHLFIPCKFVGKVWNAFSNVFGWQ 94
                                    LC +E E + HLF+ C+F  +VW+A+ + F +Q
Sbjct: 157 LISRVNTKERLSRFGIIRQEDTVCVLCNNELEHVYHLFLGCEFAWQVWSAWISGFDYQ 214

[Close]
BLAST of Lag0001879 vs. NCBI nr
Match: XP_016164877.1 (uncharacterized protein LOC107607430 [Arachis ipaensis] >XP_029150118.1 uncharacterized protein LOC114925644 [Arachis hypogaea])

HSP 1 Score: 56.6 bits (135), Expect = 2.0e-04
Identity = 35/131 (26.72%), Postives = 53/131 (40.46%), Query Frame = 0 

Query: 7   SPSQREDVVIWKHDKSRLFSVKSTLKAIQSN---RRVLEADLCDQLWKGNTPKKVKF--- 66
           SP  RED V+WK D++ ++S KS  +A+ +      V        +WKG  P +++    
Sbjct: 82  SPQLREDSVVWKFDRTGVYSTKSFPQALHAEVLPEEVTSYSFTSDVWKGFIPPRIELLSW 141

Query: 67  ---------------------------FLCKSEESLIHLFIPCKFVGKVWNAFSNVFGWQ 105
                                        CKSEE+  HLFI C+   +VW A+   FG  
Sbjct: 142 FVLIGRVNTKDRLGRLHVIDQNDTLCVLCCKSEETAFHLFIGCEIRWQVWCAWLFAFGRS 201

The following BLAST results are available for this feature:
BLAST of Lag0001879 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG5619486.13.1e-0534.04hypothetical protein H5410_004704 [Solanum commersonii][more]
XP_015946048.18.9e-0528.57uncharacterized protein LOC107471121 [Arachis duranensis][more]
XP_016206012.11.2e-0428.23uncharacterized protein LOC107646336 [Arachis ipaensis] >XP_025661010.1 uncharac... [more]
XP_016172465.11.5e-0428.81uncharacterized protein LOC107614851 [Arachis ipaensis][more]
XP_016164877.12.0e-0426.72uncharacterized protein LOC107607430 [Arachis ipaensis] >XP_029150118.1 uncharac... [more]
BLAST of Lag0001879 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0001879.1Lag0001879.1mRNA