Lag0001318 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0001318
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Coiled-coil domain-containing protein 124 family
Location	chr4: 29283832 .. 29285440 (-)
RNA-Seq Expression	Lag0001318
Synteny	Lag0001318

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTTCTTCGATCTTGGGAATGAACTTGCATGGTGGAAAGGTTTTGTTGGAATTGTACGAAATACCCAAAGAAAGAAGTGGCTTCAATAAAAGTGAAGCCATTTGAGGAGATAAAATTGAGACAGAAAGATGAGGGACAGGAGAGGCGGATTAGGCAAAAAAAAAAAATCTCTGTTTTTGGTGGTTGTTAAGAGTACACAGCCTGAGTTCAGGCTGCTCTACGTGCACAGATTTTTTTAACCATTCTTTCTTTTCTTATTAAACACTAATTGGGGGTGTTTTTATAAAACGTCAGTATATGTTTGCTGTGATTTCTGTGATTTTGTTAATGAACATTCTGCTGTTTCCTATAAAAAAGAATGTGCCGAGTTACTGAGTTCTTTTTCCCCTGGTGTTCTGATGATTAGGCTTTTGAAGAAGCTGAACTCCCAAGGCTGAAGGAAGAGAAACCTGGTCTTACTCACAATCAGTACAAGGACATGATATGGAAGCTATGGAAGAAGTCTCCTGACAACCCTCTTAATCAGGTAGCTTAATGTATAAATTGTTTTAAAAAACACCATTCTGGTTTTTCCCTCTTTCTTTGAAGCGTGCCTGCTTTTTAATTTTGTGGTGGTAGGTTGCAGCAGAGTGATTGGATCCATGATCTTCAACATGGGGCAGGCGAGCTTTCCCTGGACTTTTAAGCCTATTTACTAAAGTTTGGTCAAAGCTTGTAAACTGACCAATTCTTCTTCAGTTCAGTTGTATCCCGGAATATTTAGATTGCAAATGGGTCTTCGTCTGTCTGTTACATATTATGGCACAGGACTCTCGTAAATGCATATAAATAGTTTTGGGTCCTGTGTTGTACAATAAGGAATCAATATTATGACCTTGGTTTCTCTTATGTTCAATCAGGCCATGTAGTCTCACATTTTATGCATAGGCATTTAAATTGAATGGAGTTCATGGATGATGGATCCTTGAGGTTTTAAGAAATGGTTTGAGTTACTTTCTTTTGAACTACCTTGGGGATTCAGAAATATGGTACATTGGTTTAGAGGCTGCATTTTGGAAGTCATATAGGGGGATATAACTTGTTGCAGTCTATATAACCAAAACACTGTGAAATTAATATTGTGCTGCCATGATCGAGATGTGAGTTTTACATGTTACAGTGCTTTTCTCTTTAATTAAGGTGTACTGTGTACTTTTATCATTTTCCTCCATCACTGCAAGAAGTGTTTAATGTTCCCTTGGGTTATAAAAGTGTTCATTTTTCTGTGCTCTTTCCTATGGATGCTCGACGCCAATGGAATGGCAAGAGCAGATGCACGTGCTTCTTGTTGGAAAGTATTCAAGTGCACTTTACCTGATCATGTTAAAGTGGGACCTTCTACTGTCCAATTCCTCTCTTATGTGTTGTCTTATGAAAGGAAAGATAAAAGCTTTAAATGCCTCTGAATGTGCTGTCTGATGATGCGGTTCGGTTGTGGTTGTATACTCTTTGTTTTCTTTCTTTCTTTCTTTCTTGTTGACTCAGGGATGAGGTGATTCCGGCGCCCCAGGGAAGGACGTGGAAGTACTGGAAGTTGGTAAATCCAGATGGGATAGGATGTCCTTGA

mRNA sequence

ATGAGTTCTTCGATCTTGGGAATGAACTTGCATGGTGGAAAGGCTTTTGAAGAAGCTGAACTCCCAAGGCTGAAGGAAGAGAAACCTGGTCTTACTCACAATCAGTACAAGGACATGATATGGAAGCTATGGAAGAAGTCTCCTGACAACCCTCTTAATCAGTGTTCATTTTTCTGTGCTCTTTCCTATGGATGCTCGACGCCAATGGAATGGCAAGAGCAGATGCACGTGCTTCTTGTTGGAAAGTATTCAAGTGCACTTTACCTGATCATGTTAAAGGATGAGGTGATTCCGGCGCCCCAGGGAAGGACGTGGAAGTACTGGAAGTTGGTAAATCCAGATGGGATAGGATGTCCTTGA

Coding sequence (CDS)

ATGAGTTCTTCGATCTTGGGAATGAACTTGCATGGTGGAAAGGCTTTTGAAGAAGCTGAACTCCCAAGGCTGAAGGAAGAGAAACCTGGTCTTACTCACAATCAGTACAAGGACATGATATGGAAGCTATGGAAGAAGTCTCCTGACAACCCTCTTAATCAGTGTTCATTTTTCTGTGCTCTTTCCTATGGATGCTCGACGCCAATGGAATGGCAAGAGCAGATGCACGTGCTTCTTGTTGGAAAGTATTCAAGTGCACTTTACCTGATCATGTTAAAGGATGAGGTGATTCCGGCGCCCCAGGGAAGGACGTGGAAGTACTGGAAGTTGGTAAATCCAGATGGGATAGGATGTCCTTGA

Protein sequence

MSSSILGMNLHGGKAFEEAELPRLKEEKPGLTHNQYKDMIWKLWKKSPDNPLNQCSFFCALSYGCSTPMEWQEQMHVLLVGKYSSALYLIMLKDEVIPAPQGRTWKYWKLVNPDGIGCP

Homology

[Close]

BLAST of Lag0001318 vs. NCBI nr
Match: XP_040364647.1 (coiled-coil domain-containing protein 124 isoform X1 [Rosa chinensis])

HSP 1 Score: 97.1 bits (240), Expect = 1.1e-16
Identity = 43/46 (93.48%), Postives = 43/46 (93.48%), Query Frame = 0


Query: 14  KAFEEAELPRLKEEKPGLTHNQYKDMIWKLWKKSPDNPLNQCSFFC 60
           KAFEEAELPRLKEEKPGLTHNQYKDMIWKLWKKSPDNPLNQ   FC
Sbjct: 187 KAFEEAELPRLKEEKPGLTHNQYKDMIWKLWKKSPDNPLNQVMVFC 232

[Close]

BLAST of Lag0001318 vs. NCBI nr
Match: MBA0677068.1 (hypothetical protein [Gossypium aridum])

HSP 1 Score: 96.7 bits (239), Expect = 1.5e-16
Identity = 43/49 (87.76%), Postives = 45/49 (91.84%), Query Frame = 0


Query: 14  KAFEEAELPRLKEEKPGLTHNQYKDMIWKLWKKSPDNPLNQCSFFCALS 63
           KAFEEAELPRLKEEKPGLTHNQYKDMIWKLWKKSPDNPLNQ S +  L+
Sbjct: 186 KAFEEAELPRLKEEKPGLTHNQYKDMIWKLWKKSPDNPLNQASLYLTLN 234

[Close]

BLAST of Lag0001318 vs. NCBI nr
Match: MBA0642658.1 (hypothetical protein [Gossypium klotzschianum])

HSP 1 Score: 96.7 bits (239), Expect = 1.5e-16
Identity = 43/49 (87.76%), Postives = 45/49 (91.84%), Query Frame = 0


Query: 14  KAFEEAELPRLKEEKPGLTHNQYKDMIWKLWKKSPDNPLNQCSFFCALS 63
           KAFEEAELPRLKEEKPGLTHNQYKDMIWKLWKKSPDNPLNQ S +  L+
Sbjct: 182 KAFEEAELPRLKEEKPGLTHNQYKDMIWKLWKKSPDNPLNQASLYLTLN 230

[Close]

BLAST of Lag0001318 vs. NCBI nr
Match: MBA0581125.1 (hypothetical protein [Gossypium raimondii])

HSP 1 Score: 96.7 bits (239), Expect = 1.5e-16
Identity = 43/49 (87.76%), Postives = 45/49 (91.84%), Query Frame = 0


Query: 14  KAFEEAELPRLKEEKPGLTHNQYKDMIWKLWKKSPDNPLNQCSFFCALS 63
           KAFEEAELPRLKEEKPGLTHNQYKDMIWKLWKKSPDNPLNQ S +  L+
Sbjct: 178 KAFEEAELPRLKEEKPGLTHNQYKDMIWKLWKKSPDNPLNQASLYLTLN 226

[Close]

BLAST of Lag0001318 vs. NCBI nr
Match: PPD90777.1 (hypothetical protein GOBAR_DD12294 [Gossypium barbadense])

HSP 1 Score: 96.7 bits (239), Expect = 1.5e-16
Identity = 43/49 (87.76%), Postives = 45/49 (91.84%), Query Frame = 0


Query: 14  KAFEEAELPRLKEEKPGLTHNQYKDMIWKLWKKSPDNPLNQCSFFCALS 63
           KAFEEAELPRLKEEKPGLTHNQYKDMIWKLWKKSPDNPLNQ S +  L+
Sbjct: 186 KAFEEAELPRLKEEKPGLTHNQYKDMIWKLWKKSPDNPLNQASLYLTLN 234

[Close]

BLAST of Lag0001318 vs. ExPASy Swiss-Prot
Match: Q2TBV6 (Coiled-coil domain-containing protein 124 OS=Bos taurus OX=9913 GN=CCDC124 PE=2 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 3.8e-07
Identity = 24/40 (60.00%), Postives = 31/40 (77.50%), Query Frame = 0


Query: 15  AFEEAELPRLKEEKPGLTHNQYKDMIWKLWKKSPDNPLNQ 55
           AFEEA+LPRLK+E P +  +Q K M+ K W +SPDNP+NQ
Sbjct: 175 AFEEAQLPRLKQENPNMRLSQLKQMLKKEWLRSPDNPMNQ 214

[Close]

BLAST of Lag0001318 vs. ExPASy Swiss-Prot
Match: Q96CT7 (Coiled-coil domain-containing protein 124 OS=Homo sapiens OX=9606 GN=CCDC124 PE=1 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 8.4e-07
Identity = 23/40 (57.50%), Postives = 31/40 (77.50%), Query Frame = 0


Query: 15  AFEEAELPRLKEEKPGLTHNQYKDMIWKLWKKSPDNPLNQ 55
           AFEEA+LPRLK+E P +  +Q K ++ K W +SPDNP+NQ
Sbjct: 175 AFEEAQLPRLKQENPNMRLSQLKQLLKKEWLRSPDNPMNQ 214

[Close]

BLAST of Lag0001318 vs. ExPASy Swiss-Prot
Match: Q5R8X8 (Coiled-coil domain-containing protein 124 OS=Pongo abelii OX=9601 GN=CCDC124 PE=2 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 8.4e-07
Identity = 23/40 (57.50%), Postives = 31/40 (77.50%), Query Frame = 0


Query: 15  AFEEAELPRLKEEKPGLTHNQYKDMIWKLWKKSPDNPLNQ 55
           AFEEA+LPRLK+E P +  +Q K ++ K W +SPDNP+NQ
Sbjct: 175 AFEEAQLPRLKQENPNMRLSQLKQLLKKEWLRSPDNPMNQ 214

[Close]

BLAST of Lag0001318 vs. ExPASy Swiss-Prot
Match: Q9D8X2 (Coiled-coil domain-containing protein 124 OS=Mus musculus OX=10090 GN=Ccdc124 PE=1 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 2.4e-06
Identity = 22/40 (55.00%), Postives = 30/40 (75.00%), Query Frame = 0


Query: 15  AFEEAELPRLKEEKPGLTHNQYKDMIWKLWKKSPDNPLNQ 55
           AFEE +LPRLK+E P +  +Q K ++ K W +SPDNP+NQ
Sbjct: 169 AFEEVQLPRLKQENPNMRLSQLKQLLKKEWLRSPDNPMNQ 208

[Close]

BLAST of Lag0001318 vs. ExPASy Swiss-Prot
Match: Q6PHE8 (Coiled-coil domain-containing protein 124 OS=Danio rerio OX=7955 GN=ccdc124 PE=2 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 1.6e-05
Identity = 22/40 (55.00%), Postives = 28/40 (70.00%), Query Frame = 0


Query: 15  AFEEAELPRLKEEKPGLTHNQYKDMIWKLWKKSPDNPLNQ 55
           AFEEA +PR+K E P +  +Q K  + K W KSP+NPLNQ
Sbjct: 169 AFEEANMPRVKMENPNMRLSQLKQQLKKEWTKSPENPLNQ 208

The following BLAST results are available for this feature:

BLAST of Lag0001318 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_040364647.1	1.1e-16	93.48	coiled-coil domain-containing protein 124 isoform X1 [Rosa chinensis]	[more]
MBA0677068.1	1.5e-16	87.76	hypothetical protein [Gossypium aridum]	[more]
MBA0642658.1	1.5e-16	87.76	hypothetical protein [Gossypium klotzschianum]	[more]
MBA0581125.1	1.5e-16	87.76	hypothetical protein [Gossypium raimondii]	[more]
PPD90777.1	1.5e-16	87.76	hypothetical protein GOBAR_DD12294 [Gossypium barbadense]	[more]

BLAST of Lag0001318 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q2TBV6	3.8e-07	60.00	Coiled-coil domain-containing protein 124 OS=Bos taurus OX=9913 GN=CCDC124 PE=2 ...	[more]
Q96CT7	8.4e-07	57.50	Coiled-coil domain-containing protein 124 OS=Homo sapiens OX=9606 GN=CCDC124 PE=...	[more]
Q5R8X8	8.4e-07	57.50	Coiled-coil domain-containing protein 124 OS=Pongo abelii OX=9601 GN=CCDC124 PE=...	[more]
Q9D8X2	2.4e-06	55.00	Coiled-coil domain-containing protein 124 OS=Mus musculus OX=10090 GN=Ccdc124 PE...	[more]
Q6PHE8	1.6e-05	55.00	Coiled-coil domain-containing protein 124 OS=Danio rerio OX=7955 GN=ccdc124 PE=2...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010422	Coiled-coil domain-containing protein 124/Oxs1	PFAM	PF06244	Ccdc124	coord: 14..54 e-value: 4.6E-18 score: 66.0
IPR010422	Coiled-coil domain-containing protein 124/Oxs1	PANTHER	PTHR21680	UNCHARACTERIZED	coord: 14..55
None	No IPR available	PANTHER	PTHR21680:SF1	OS04G0561600 PROTEIN	coord: 14..55

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0001318.1	Lag0001318.1	mRNA