Lag0001242 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0001242
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Locationchr4: 27624600 .. 27625827 (+)
RNA-Seq ExpressionLag0001242
SyntenyLag0001242
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACAGACGAAGATTGGGAAGCTCTAGATGAAGAGGCAGTTGCAAGCATAAGGATGTGTTTGTCAATGGATGTGGCAAGTCTAGTAGCCCATGTGACAACTGCAGTTAAATTGATGGAAGCGCTTACAAACAGGTATGAAAAACCTCTGCTAACAATAAGGTCTACCTAGTTAAGAAGTTTTTCAACATGCAAATGTCTAAGGATGCTTCTGTGAATTCCTATATTAATGAGGTTACCACTTTGATTAATCCGTTAAAATCTGTTTAGATAGAATTTACTGATGAGGTGAATGTTATTCAGTTGTTAACGTCTTTACCTGATAGTTGGGAAATGATGAAGACAACAGTGTCTAATTCGACTAGAAATAATACTTTAAAATTTTCAGAAGTTTGTGATTTAGCCATAGCTGAGGAAATTCGTAGGCAAGTAGTAATAAAGAGTCTACACTAGGGTCAGCTTTGGTTATGACTAAGGGTAAAGATAAGATTGATGAAGAAAATGAACCGAGTAGCAGTAGTAGAAAGTGGAAAATAGGAATGAGGTAAAATGTTTTTACTGCCATAAGAAAGGTCACTTCAAGAGTCGGTGTAGAAAGTTCAAAGAGGATCAAAGAAGAAAACATGAGGCAAGTATAGTGTATGATGCCTTAGTTTGTGTTCAGAGTGACACAAGGTGTAGTAACCACTCATCAGATTGGATATTAGACAGTGCAGCTTCTGTACACATAGCTTTAGATAGGAGTTTGTTCACATCATTCACAGGAGGGCATCATGGCCTAGTGAGGATGGGAATGGTAGAACCTCCAAAACTAGATGGATTGGAGATGTTAGTCTGAAGACAGAATGTGGAGATAAATTGGTACTATGAGATGTCAGGTTCGTGCCTAATATCAAATGAATCTATTTCTATTGGTAAGTTGGTAGATGATGGTTACATGTGTGAGTTTGGTAGTCGCTAGTATAACTCAAGTTAGGATCCCAGGTAGTGTCAGTTGGCCACAGGAATCTACACTGTACAAATGTCAGTTGAATGTTGCCAAAGGATCAAAGAGACAGTGGATGTCGGTTAAAGCTGCATATGGCAGTTGTAGAGGTACAGTTAAGCCAACAACAATGATAGCCAATTTCGATCTGTCCAATCAAGATCCTTCAGTTCAGAAACAATTGGGAAGTCCAGGAGAGAAAGTTGATGGCTATCGTGAATCCCCATTGTTAGACGCTCGATGA

mRNA sequence

ATGACAGACGAAGATTGGGAAGCTCTAGATGAAGAGGCAGTTGCAAGCATAAGGATGTGTTTGTCAATGGATGTGGCAAGTCTAGTAGCCCATGTGACAACTGCAGTTAAATTGATGGAAGCGCTTACAAACAGTTGGGAAATGATGAAGACAACAGTGTCTAATTCGACTAGAAATAATACTTTAAAATTTTCAGAAGTTTGTGATTTAGCCATAGCTGAGGAAATTCGTAGGCAAGTAAGTGACACAAGGTGTAGTAACCACTCATCAGATTGGATATTAGACAGTGCAGCTTCTGTACACATAGCTTTAGATAGGAGTTTGTTCACATCATTCACAGGAGGGCATCATGGCCTAGTGAGGATGGGAATGGTAGAACCTCCAAAACTAGATGGATTGGAGATGATCCCAGGTAGTGTCAGTTGGCCACAGGAATCTACACTGTACAAATGTCAGTTGAATGTTGCCAAAGGATCAAAGAGACAGTGGATGTCGGTTAAAGCTGCATATGGCAGTTGTAGAGGTACAGTTAAGCCAACAACAATGATAGCCAATTTCGATCTGTCCAATCAAGATCCTTCAGTTCAGAAACAATTGGGAAGTCCAGGAGAGAAAGTTGATGGCTATCGTGAATCCCCATTGTTAGACGCTCGATGA

Coding sequence (CDS)

ATGACAGACGAAGATTGGGAAGCTCTAGATGAAGAGGCAGTTGCAAGCATAAGGATGTGTTTGTCAATGGATGTGGCAAGTCTAGTAGCCCATGTGACAACTGCAGTTAAATTGATGGAAGCGCTTACAAACAGTTGGGAAATGATGAAGACAACAGTGTCTAATTCGACTAGAAATAATACTTTAAAATTTTCAGAAGTTTGTGATTTAGCCATAGCTGAGGAAATTCGTAGGCAAGTAAGTGACACAAGGTGTAGTAACCACTCATCAGATTGGATATTAGACAGTGCAGCTTCTGTACACATAGCTTTAGATAGGAGTTTGTTCACATCATTCACAGGAGGGCATCATGGCCTAGTGAGGATGGGAATGGTAGAACCTCCAAAACTAGATGGATTGGAGATGATCCCAGGTAGTGTCAGTTGGCCACAGGAATCTACACTGTACAAATGTCAGTTGAATGTTGCCAAAGGATCAAAGAGACAGTGGATGTCGGTTAAAGCTGCATATGGCAGTTGTAGAGGTACAGTTAAGCCAACAACAATGATAGCCAATTTCGATCTGTCCAATCAAGATCCTTCAGTTCAGAAACAATTGGGAAGTCCAGGAGAGAAAGTTGATGGCTATCGTGAATCCCCATTGTTAGACGCTCGATGA

Protein sequence

MTDEDWEALDEEAVASIRMCLSMDVASLVAHVTTAVKLMEALTNSWEMMKTTVSNSTRNNTLKFSEVCDLAIAEEIRRQVSDTRCSNHSSDWILDSAASVHIALDRSLFTSFTGGHHGLVRMGMVEPPKLDGLEMIPGSVSWPQESTLYKCQLNVAKGSKRQWMSVKAAYGSCRGTVKPTTMIANFDLSNQDPSVQKQLGSPGEKVDGYRESPLLDAR
Homology
BLAST of Lag0001242 vs. NCBI nr
Match: TMW80639.1 (hypothetical protein EJD97_017495, partial [Solanum chilense])

HSP 1 Score: 79.3 bits (194), Expect = 4.4e-11
Identity = 65/191 (34.03%), Postives = 94/191 (49.21%), Query Frame = 0

Query: 1   MTDEDWEALDEEAVASIRMCLSMDVA-SLVAHVTT-----AVKLMEALTNSWEMMKTTVS 60
           MT+E W+  D +A+  IR+ LS +VA ++V   TT     A+ LM +L  SW+ +  T+S
Sbjct: 8   MTEEKWKLKDRQALGFIRLTLSRNVAFNIVKEKTTFDEIKALILMSSLPESWDTVAATIS 67

Query: 61  NSTRNNTLKFSEVCDLAIAEEIRRQ-VSDTRCSNHSSD---------------------- 120
           +S  +  LKF E+CD+ ++E IR+Q V D+  S  S D                      
Sbjct: 68  SSGGSEKLKFDEICDVVLSENIRKQEVGDSSGSALSVDRRGRTKDIGDALILSVNSPFES 127

Query: 121 WILDSAASVHIALDRSLFTSFTGGHHGLVRMGMVEPPKLD--GLEMIPGSVSWPQESTLY 161
           WILDS AS H +  + LF +F  G+ G          KLD  G     G  SW     + 
Sbjct: 128 WILDSGASFHSSPSKELFQNFKSGNFG----------KLDSTGYAAEFGKGSW----KIV 184

BLAST of Lag0001242 vs. NCBI nr
Match: KAE8660039.1 (hypothetical protein F3Y22_tig00116959pilonHSYRG00493 [Hibiscus syriacus])

HSP 1 Score: 77.0 bits (188), Expect = 2.2e-10
Identity = 53/149 (35.57%), Postives = 75/149 (50.34%), Query Frame = 0

Query: 1   MTDEDWEALDEEAVASIRMCLSMDVASLVAHVTTAVKLMEALTNSWEMMKTTVSNSTRNN 60
           M +EDW  LD +A+  IR+ LS +VA  +A   T   LM AL+NSW    T VS+S+ NN
Sbjct: 589 MKNEDWALLDRQALGVIRLTLSRNVAFNIAKEKTTASLMVALSNSWNATVTAVSSSSGNN 648

Query: 61  TLKFSEVCDLAIAEEIRRQVSDTRCSNHSS---DWILDSAASVHIALDRSLFTSFTGGHH 120
            LKF +V DL  A  +  +  D    + +S    WILDS AS H    + +  ++  G  
Sbjct: 649 KLKFDDVRDLESA-NVTEETGDAMILSVNSLIESWILDSWASFHSTPCQEIMENYVSGDF 708

Query: 121 GLVRMGMVEPPKLDGLE----MIPGSVSW 143
           G V +   E  K+ G       +P   +W
Sbjct: 709 GKVHLADDETLKIVGKGDIRLKLPNQTTW 736

BLAST of Lag0001242 vs. NCBI nr
Match: KAB5561215.1 (hypothetical protein DKX38_006172 [Salix brachista])

HSP 1 Score: 69.3 bits (168), Expect = 4.6e-08
Identity = 54/211 (25.59%), Postives = 90/211 (42.65%), Query Frame = 0

Query: 1   MTDEDWEALDEEAVASIRMCLSMDVASLVAHVTTAVKLMEALTNSWEMMKTTVSNSTRNN 60
           M DE+W +LD + +  IR+ L+  VA  V    T   LM  L+  WE M+TT+SNS   +
Sbjct: 47  MKDEEWISLDRQVLGLIRLTLTRKVAHNVIKERTTAGLMTVLSGIWEAMRTTISNSAGKS 106

Query: 61  TLKFSEVCDLAIAEEIRRQVS------------DTR------------------------ 120
            L + ++ DL + EE+RR+ +            +TR                        
Sbjct: 107 KLNYDDIRDLILGEEVRRRDAGESSTSGSTLNVETRGHIQANCYKMKKEDDDKSANTVAE 166

Query: 121 ---------CSNHSSDWILDSAASVHIALDRSLFTSFTGGHHGLVRMGMVEPPKLDGLEM 167
                     S+    W+LDS AS H    +++  ++  G +G+V +   EP ++ G+  
Sbjct: 167 EGHEALLLSVSSPLDSWVLDSGASFHTTPHQNILQNYVAGDYGVVYLADGEPLRIIGIGD 226

BLAST of Lag0001242 vs. NCBI nr
Match: RVX04508.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 66.2 bits (160), Expect = 3.9e-07
Identity = 49/153 (32.03%), Postives = 68/153 (44.44%), Query Frame = 0

Query: 1   MTDEDWEALDEEAVASIRMCLSMDVASLVAHVTTAVKLMEAL---------TNSWEMMKT 60
           M  E+W  LD + +  IR+ LS  VA  V    T   LM+AL         T SWE M+ 
Sbjct: 209 MKAEEWALLDIQVLGVIRLTLSRSVAHNVVKENTTADLMKALSGMYEKPSQTISWEAMRM 268

Query: 61  TVSNSTRNNTLKFSEVCDLAIAEEIRRQVSDTRCSNHSS--------------------- 120
            VSNST    LK++++ DL +AEEIRR+ +     + S+                     
Sbjct: 269 AVSNSTGKEKLKYNDIRDLILAEEIRRRDAGETSGSGSALNLETRGREEVQDALLLAVDS 328

BLAST of Lag0001242 vs. NCBI nr
Match: KAG6525408.1 (hypothetical protein ZIOFF_015364 [Zingiber officinale])

HSP 1 Score: 63.2 bits (152), Expect = 3.3e-06
Identity = 37/108 (34.26%), Postives = 57/108 (52.78%), Query Frame = 0

Query: 35  AVKLMEALTNSWEMMKTTVSNSTRNNTLKFSEVCDLAIAEEIRRQVSDTRCSNHSS---- 94
           A+ L+ +L N+WE M+  VSNS  N  L F++V D  +AEE+R   S    +++S+    
Sbjct: 34  ALILLASLPNNWEPMQAVVSNSVGNTKLNFNDVRDRILAEEVRIIDSGEMLASNSALNIE 93

Query: 95  ------DWILDSAASVHIALDRSLFTSFTGGHHGLVRMGMVEPPKLDG 133
                  W+LDS AS H    R +  ++  G+HG V +   EP  + G
Sbjct: 94  VDSPIDPWVLDSGASFHTTAQREILENYVAGNHGKVYLADGEPLDIVG 141

BLAST of Lag0001242 vs. ExPASy TrEMBL
Match: A0A6N2AG08 (Uncharacterized protein (Fragment) OS=Solanum chilense OX=4083 GN=EJD97_017495 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 2.1e-11
Identity = 65/191 (34.03%), Postives = 94/191 (49.21%), Query Frame = 0

Query: 1   MTDEDWEALDEEAVASIRMCLSMDVA-SLVAHVTT-----AVKLMEALTNSWEMMKTTVS 60
           MT+E W+  D +A+  IR+ LS +VA ++V   TT     A+ LM +L  SW+ +  T+S
Sbjct: 8   MTEEKWKLKDRQALGFIRLTLSRNVAFNIVKEKTTFDEIKALILMSSLPESWDTVAATIS 67

Query: 61  NSTRNNTLKFSEVCDLAIAEEIRRQ-VSDTRCSNHSSD---------------------- 120
           +S  +  LKF E+CD+ ++E IR+Q V D+  S  S D                      
Sbjct: 68  SSGGSEKLKFDEICDVVLSENIRKQEVGDSSGSALSVDRRGRTKDIGDALILSVNSPFES 127

Query: 121 WILDSAASVHIALDRSLFTSFTGGHHGLVRMGMVEPPKLD--GLEMIPGSVSWPQESTLY 161
           WILDS AS H +  + LF +F  G+ G          KLD  G     G  SW     + 
Sbjct: 128 WILDSGASFHSSPSKELFQNFKSGNFG----------KLDSTGYAAEFGKGSW----KIV 184

BLAST of Lag0001242 vs. ExPASy TrEMBL
Match: A0A6A2XNT2 (NB-ARC domain-containing protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00116959pilonHSYRG00493 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.1e-10
Identity = 53/149 (35.57%), Postives = 75/149 (50.34%), Query Frame = 0

Query: 1   MTDEDWEALDEEAVASIRMCLSMDVASLVAHVTTAVKLMEALTNSWEMMKTTVSNSTRNN 60
           M +EDW  LD +A+  IR+ LS +VA  +A   T   LM AL+NSW    T VS+S+ NN
Sbjct: 589 MKNEDWALLDRQALGVIRLTLSRNVAFNIAKEKTTASLMVALSNSWNATVTAVSSSSGNN 648

Query: 61  TLKFSEVCDLAIAEEIRRQVSDTRCSNHSS---DWILDSAASVHIALDRSLFTSFTGGHH 120
            LKF +V DL  A  +  +  D    + +S    WILDS AS H    + +  ++  G  
Sbjct: 649 KLKFDDVRDLESA-NVTEETGDAMILSVNSLIESWILDSWASFHSTPCQEIMENYVSGDF 708

Query: 121 GLVRMGMVEPPKLDGLE----MIPGSVSW 143
           G V +   E  K+ G       +P   +W
Sbjct: 709 GKVHLADDETLKIVGKGDIRLKLPNQTTW 736

BLAST of Lag0001242 vs. ExPASy TrEMBL
Match: A0A5N5N166 (Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_006172 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 2.2e-08
Identity = 54/211 (25.59%), Postives = 90/211 (42.65%), Query Frame = 0

Query: 1   MTDEDWEALDEEAVASIRMCLSMDVASLVAHVTTAVKLMEALTNSWEMMKTTVSNSTRNN 60
           M DE+W +LD + +  IR+ L+  VA  V    T   LM  L+  WE M+TT+SNS   +
Sbjct: 47  MKDEEWISLDRQVLGLIRLTLTRKVAHNVIKERTTAGLMTVLSGIWEAMRTTISNSAGKS 106

Query: 61  TLKFSEVCDLAIAEEIRRQVS------------DTR------------------------ 120
            L + ++ DL + EE+RR+ +            +TR                        
Sbjct: 107 KLNYDDIRDLILGEEVRRRDAGESSTSGSTLNVETRGHIQANCYKMKKEDDDKSANTVAE 166

Query: 121 ---------CSNHSSDWILDSAASVHIALDRSLFTSFTGGHHGLVRMGMVEPPKLDGLEM 167
                     S+    W+LDS AS H    +++  ++  G +G+V +   EP ++ G+  
Sbjct: 167 EGHEALLLSVSSPLDSWVLDSGASFHTTPHQNILQNYVAGDYGVVYLADGEPLRIIGIGD 226

BLAST of Lag0001242 vs. ExPASy TrEMBL
Match: A0A7N2LJ68 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 5.0e-08
Identity = 44/123 (35.77%), Postives = 67/123 (54.47%), Query Frame = 0

Query: 1   MTDEDWEALDEEAVASIRMCLSMDVASLVAHVTTAVKLMEALTNSWEMMKTTVSNSTRNN 60
           M  ++W  LD + +  I++ LS  VA  V    T   LM+AL+  WE M+  V+NSTR  
Sbjct: 47  MKAKEWALLDRQVLGVIKLTLSRSVAHNVVKENTTADLMKALSGIWEAMRMAVNNSTRKE 106

Query: 61  TLKFSEVCDLAIAEEIRRQVSDTRCSNHSSDWILDS---AASVHIALDRSLFTSFTGGHH 120
            LK++++ DL +AEEIR++ +    S  SS   L++    AS HI   R +  ++  G  
Sbjct: 107 KLKYNDIRDLILAEEIRKRDAG-ETSGSSSALNLETRGRGASFHITPHREIIQNYVAGDF 166

BLAST of Lag0001242 vs. ExPASy TrEMBL
Match: A0A438J6C8 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_3536 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 1.9e-07
Identity = 49/153 (32.03%), Postives = 68/153 (44.44%), Query Frame = 0

Query: 1   MTDEDWEALDEEAVASIRMCLSMDVASLVAHVTTAVKLMEAL---------TNSWEMMKT 60
           M  E+W  LD + +  IR+ LS  VA  V    T   LM+AL         T SWE M+ 
Sbjct: 209 MKAEEWALLDIQVLGVIRLTLSRSVAHNVVKENTTADLMKALSGMYEKPSQTISWEAMRM 268

Query: 61  TVSNSTRNNTLKFSEVCDLAIAEEIRRQVSDTRCSNHSS--------------------- 120
            VSNST    LK++++ DL +AEEIRR+ +     + S+                     
Sbjct: 269 AVSNSTGKEKLKYNDIRDLILAEEIRRRDAGETSGSGSALNLETRGREEVQDALLLAVDS 328

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TMW80639.14.4e-1134.03hypothetical protein EJD97_017495, partial [Solanum chilense][more]
KAE8660039.12.2e-1035.57hypothetical protein F3Y22_tig00116959pilonHSYRG00493 [Hibiscus syriacus][more]
KAB5561215.14.6e-0825.59hypothetical protein DKX38_006172 [Salix brachista][more]
RVX04508.13.9e-0732.03Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera][more]
KAG6525408.13.3e-0634.26hypothetical protein ZIOFF_015364 [Zingiber officinale][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6N2AG082.1e-1134.03Uncharacterized protein (Fragment) OS=Solanum chilense OX=4083 GN=EJD97_017495 P... [more]
A0A6A2XNT21.1e-1035.57NB-ARC domain-containing protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig0011... [more]
A0A5N5N1662.2e-0825.59Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_006172 PE=4 SV=1[more]
A0A7N2LJ685.0e-0835.77Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1[more]
A0A438J6C81.9e-0732.03Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 188..218

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0001242.1Lag0001242.1mRNA