Lag0000691 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0000691
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	PMD domain-containing protein
Location	chr4: 13128826 .. 13129221 (-)
RNA-Seq Expression	Lag0000691
Synteny	Lag0000691

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCTCGAAGAGATACGACCATATTGCAGACCTTATGTATATTCTGATTAACCAGTTCACCATCCAGACTTTATTAGAATTCTGGGACTCGACCTACAAGTGTTTCGCGTTCCAAGATTTTGACTTGGTACCGACCATTGAGGAGTACCACACGATGCTGAATATTGAAGAAAAAGGTGGAGAGATGATCTATTGTTTCAACCCACAGCTAACTGCGAAAAGAACTTTAGCCAAATTTCTAGCTGTACACCTGAAGGAAGTGCAGAAAAATGTGAAAGTGAAAGGGGTTGAAGAGTCTATATCTGTAGATTATCTAACAGAACTCGCTCGCAAACACATAAATGAAGAAAAGGGTCTGGTTTTGTTAGCTTTGTGCATCTACAGGATGGTCTAG

mRNA sequence

ATGTTCTCGAAGAGATACGACCATATTGCAGACCTTATGTATATTCTGATTAACCAGTTCACCATCCAGACTTTATTAGAATTCTGGGACTCGACCTACAAGTGTTTCGCGTTCCAAGATTTTGACTTGGTACCGACCATTGAGGAGTACCACACGATGCTGAATATTGAAGAAAAAGGTGGAGAGATGATCTATTGTTTCAACCCACAGCTAACTGCGAAAAGAACTTTAGCCAAATTTCTAGCTGTACACCTGAAGGAAGTGCAGAAAAATGTGAAAGTGAAAGGGGTTGAAGAGTCTATATCTGTAGATTATCTAACAGAACTCGCTCGCAAACACATAAATGAAGAAAAGGGTCTGGTTTTGTTAGCTTTGTGCATCTACAGGATGGTCTAG

Coding sequence (CDS)

ATGTTCTCGAAGAGATACGACCATATTGCAGACCTTATGTATATTCTGATTAACCAGTTCACCATCCAGACTTTATTAGAATTCTGGGACTCGACCTACAAGTGTTTCGCGTTCCAAGATTTTGACTTGGTACCGACCATTGAGGAGTACCACACGATGCTGAATATTGAAGAAAAAGGTGGAGAGATGATCTATTGTTTCAACCCACAGCTAACTGCGAAAAGAACTTTAGCCAAATTTCTAGCTGTACACCTGAAGGAAGTGCAGAAAAATGTGAAAGTGAAAGGGGTTGAAGAGTCTATATCTGTAGATTATCTAACAGAACTCGCTCGCAAACACATAAATGAAGAAAAGGGTCTGGTTTTGTTAGCTTTGTGCATCTACAGGATGGTCTAG

Protein sequence

MFSKRYDHIADLMYILINQFTIQTLLEFWDSTYKCFAFQDFDLVPTIEEYHTMLNIEEKGGEMIYCFNPQLTAKRTLAKFLAVHLKEVQKNVKVKGVEESISVDYLTELARKHINEEKGLVLLALCIYRMV

Homology

[Close]

BLAST of Lag0000691 vs. NCBI nr
Match: KAA0060423.1 (uncharacterized protein E6C27_scaffold22G002420 [Cucumis melo var. makuwa])

HSP 1 Score: 151.0 bits (380), Expect = 7.2e-33
Identity = 70/132 (53.03%), Postives = 96/132 (72.73%), Query Frame = 0


Query: 1   MFSKRYDHIADLMYILINQFTIQTLLEFWDSTYKCFAFQDFDLVPTIEEYHTMLNIEEKG 60
           MFSK+Y HI +LMYI +N F ++ ++ FWD  Y CF F   DL+PTIEEY  ML++ EK 
Sbjct: 73  MFSKKYGHIVELMYIPVNYFALRAIINFWDPAYGCFTFGSCDLLPTIEEYQAMLSMPEKE 132

Query: 61  GEMIYCFNPQLTAKRTLAKFL-AVHLKEVQKNVKVKGVEESISVDYLTELARKHINEEKG 120
            E++Y FNP+ T KRTL+KFL  VH  E+QK +K+KG EE++  DYL ++ + +++E+KG
Sbjct: 133 REIVYFFNPKQTTKRTLSKFLETVHAAEIQKYIKIKGGEENVPFDYLIKMTQTYVDEDKG 192

Query: 121 LVLLALCIYRMV 132
           L LLALCIY  V
Sbjct: 193 LTLLALCIYGAV 204

[Close]

BLAST of Lag0000691 vs. NCBI nr
Match: KAA0066094.1 (girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 148.7 bits (374), Expect = 3.6e-32
Identity = 70/132 (53.03%), Postives = 96/132 (72.73%), Query Frame = 0


Query: 1   MFSKRYDHIADLMYILINQFTIQTLLEFWDSTYKCFAFQDFDLVPTIEEYHTMLNIEEKG 60
           MFSK+Y HIA+LMYI +N F ++ ++ FWD  Y CF F   DL+PTIEEY  ML++  K 
Sbjct: 73  MFSKKYGHIAELMYIPVNYFALRAIINFWDPAYGCFTFGSCDLLPTIEEYQAMLSMPGKE 132

Query: 61  GEMIYCFNPQLTAKRTLAKFL-AVHLKEVQKNVKVKGVEESISVDYLTELARKHINEEKG 120
            E++Y FNP+ T KRTL+KFL  VH  ++QK +KVKG EE++  DYL ++ + +++E+KG
Sbjct: 133 REIVYFFNPKKTTKRTLSKFLETVHAAKIQKYIKVKGGEENVPFDYLIKMTQTYVDEDKG 192

Query: 121 LVLLALCIYRMV 132
           L LLALCIY  V
Sbjct: 193 LTLLALCIYGAV 204

[Close]

BLAST of Lag0000691 vs. NCBI nr
Match: KAA0036941.1 (girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 146.4 bits (368), Expect = 1.8e-31
Identity = 71/132 (53.79%), Postives = 96/132 (72.73%), Query Frame = 0


Query: 1   MFSKRYDHIADLMYILINQFTIQTLLEFWDSTYKCFAFQDFDLVPTIEEYHTMLNIEEKG 60
           MFSK+Y HIA+LMYI +N F ++ ++ F D  Y CF F   +L+PTIEEY  ML++ EK 
Sbjct: 42  MFSKKYGHIAELMYIPVNYFALRAIINFGDPAYGCFTFGSCNLLPTIEEYQAMLSMPEKE 101

Query: 61  GEMIYCFNPQLTAKRTLAKFL-AVHLKEVQKNVKVKGVEESISVDYLTELARKHINEEKG 120
            E++Y FNP+ T KRTL+KFL  VH  E+QK +KVKG EE++  DYL ++ + +I+E+KG
Sbjct: 102 REIVYFFNPKQTTKRTLSKFLETVHATEIQKYIKVKGGEENVPFDYLIKMTQTYIDEDKG 161

Query: 121 LVLLALCIYRMV 132
           L LLALCIY  V
Sbjct: 162 LTLLALCIYGAV 173

[Close]

BLAST of Lag0000691 vs. NCBI nr
Match: KAA0036949.1 (girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 145.6 bits (366), Expect = 3.0e-31
Identity = 70/132 (53.03%), Postives = 95/132 (71.97%), Query Frame = 0


Query: 1   MFSKRYDHIADLMYILINQFTIQTLLEFWDSTYKCFAFQDFDLVPTIEEYHTMLNIEEKG 60
           MFSK+Y HIA+LMYI +N F ++ ++ F D  Y CF F   DL+PTIEEY  ML++ +K 
Sbjct: 13  MFSKKYGHIAELMYIPVNYFALRAIINFGDPAYGCFTFGSCDLLPTIEEYQAMLSMPQKE 72

Query: 61  GEMIYCFNPQLTAKRTLAKFL-AVHLKEVQKNVKVKGVEESISVDYLTELARKHINEEKG 120
            E++Y FNP+ T KRTL+KFL  VH  E+QK +K KG EE++  DYL ++ + +I+E+KG
Sbjct: 73  REIVYFFNPKQTTKRTLSKFLETVHATEIQKYIKAKGGEENVPFDYLIKMTQTYIDEDKG 132

Query: 121 LVLLALCIYRMV 132
           L LLALCIY  V
Sbjct: 133 LTLLALCIYGAV 144

[Close]

BLAST of Lag0000691 vs. NCBI nr
Match: KAA0036933.1 (uncharacterized protein E6C27_scaffold86G00060 [Cucumis melo var. makuwa])

HSP 1 Score: 145.6 bits (366), Expect = 3.0e-31
Identity = 70/132 (53.03%), Postives = 95/132 (71.97%), Query Frame = 0


Query: 1   MFSKRYDHIADLMYILINQFTIQTLLEFWDSTYKCFAFQDFDLVPTIEEYHTMLNIEEKG 60
           MFSK+Y HIA+LMYI +N F ++ ++ F D  Y CF F   DL+PTIEEY  ML++ +K 
Sbjct: 13  MFSKKYGHIAELMYIPVNYFALRAIINFGDPAYGCFTFGSCDLLPTIEEYQAMLSMPQKE 72

Query: 61  GEMIYCFNPQLTAKRTLAKFL-AVHLKEVQKNVKVKGVEESISVDYLTELARKHINEEKG 120
            E++Y FNP+ T KRTL+KFL  VH  E+QK +K KG EE++  DYL ++ + +I+E+KG
Sbjct: 73  REIVYFFNPKQTTKRTLSKFLETVHATEIQKYIKAKGGEENVPFDYLIKMTQTYIDEDKG 132

Query: 121 LVLLALCIYRMV 132
           L LLALCIY  V
Sbjct: 133 LTLLALCIYGAV 144

The following BLAST results are available for this feature:

BLAST of Lag0000691 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0060423.1	7.2e-33	53.03	uncharacterized protein E6C27_scaffold22G002420 [Cucumis melo var. makuwa]	[more]
KAA0066094.1	3.6e-32	53.03	girdin-like [Cucumis melo var. makuwa]	[more]
KAA0036941.1	1.8e-31	53.79	girdin-like [Cucumis melo var. makuwa]	[more]
KAA0036949.1	3.0e-31	53.03	girdin-like [Cucumis melo var. makuwa]	[more]
KAA0036933.1	3.0e-31	53.03	uncharacterized protein E6C27_scaffold86G00060 [Cucumis melo var. makuwa]	[more]

BLAST of Lag0000691 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR48200	PROTEIN, PUTATIVE-RELATED	coord: 2..131

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0000691.1	Lag0000691.1	mRNA