Lag0000464 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0000464
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionLOW QUALITY PROTEIN: uncharacterized protein LOC111022231
Locationchr4: 7957981 .. 7958364 (-)
RNA-Seq ExpressionLag0000464
SyntenyLag0000464
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGAAAATGGTGAACAAGAGAAGACTAAGCGGGACATCGAGAAAATCAGGGAAAAGGTTGATACAATCATTGCCGCTTTAGAAAAGGGCAAAATGGTGGCAAATACGACTGCACCAGACACTCCGATTGGAAACCCTCAATCTGGCCTACCATTTCCACCCAGTTTTGCTTCACATGTTCGTACGACAGCAGGAACATCCATGCCACAACATACTACCTATAACCCCTTATATGACATACCTGTTGGGCAATACCCTTTTCCACCATTTAAAGAAGGCCAAGTCCCCCAAATCCCCATGGCTAGCCAAGCTGGTGCTTCTTATTTCAAGCCAGAATTTTCAAAAATACCTTTTGCGGTCCCCAACTTGGATGACCCATAA

mRNA sequence

ATGGAAGAAAATGGTGAACAAGAGAAGACTAAGCGGGACATCGAGAAAATCAGGGAAAAGGTTGATACAATCATTGCCGCTTTAGAAAAGGGCAAAATGGTGGCAAATACGACTGCACCAGACACTCCGATTGGAAACCCTCAATCTGGCCTACCATTTCCACCCAGTTTTGCTTCACATGTTCGTACGACAGCAGGAACATCCATGCCACAACATACTACCTATAACCCCTTATATGACATACCTGTTGGGCAATACCCTTTTCCACCATTTAAAGAAGGCCAAGTCCCCCAAATCCCCATGGCTAGCCAAGCTGGTGCTTCTTATTTCAAGCCAGAATTTTCAAAAATACCTTTTGCGGTCCCCAACTTGGATGACCCATAA

Coding sequence (CDS)

ATGGAAGAAAATGGTGAACAAGAGAAGACTAAGCGGGACATCGAGAAAATCAGGGAAAAGGTTGATACAATCATTGCCGCTTTAGAAAAGGGCAAAATGGTGGCAAATACGACTGCACCAGACACTCCGATTGGAAACCCTCAATCTGGCCTACCATTTCCACCCAGTTTTGCTTCACATGTTCGTACGACAGCAGGAACATCCATGCCACAACATACTACCTATAACCCCTTATATGACATACCTGTTGGGCAATACCCTTTTCCACCATTTAAAGAAGGCCAAGTCCCCCAAATCCCCATGGCTAGCCAAGCTGGTGCTTCTTATTTCAAGCCAGAATTTTCAAAAATACCTTTTGCGGTCCCCAACTTGGATGACCCATAA

Protein sequence

MEENGEQEKTKRDIEKIREKVDTIIAALEKGKMVANTTAPDTPIGNPQSGLPFPPSFASHVRTTAGTSMPQHTTYNPLYDIPVGQYPFPPFKEGQVPQIPMASQAGASYFKPEFSKIPFAVPNLDDP
Homology
BLAST of Lag0000464 vs. NCBI nr
Match: XP_022157796.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111024415 [Momordica charantia])

HSP 1 Score: 95.9 bits (237), Expect = 2.7e-16
Identity = 55/123 (44.72%), Postives = 71/123 (57.72%), Query Frame = 0

Query: 2   EENGEQEKTKRDIEKIREKVDTIIAALEKGKMVANTTAPDTPIGNPQSGLPFPPSFASHV 61
           ++  EQEKT++DIE++REK+D I   LEKGK  A+      PI  PQ   P+PP +   +
Sbjct: 3   DQKAEQEKTRKDIEELREKLDXIXLXLEKGKATADPATSSNPIHEPQETPPYPPGYGPPL 62

Query: 62  RTTAGTSMPQHTTYNPLYDIPVGQYPFPPFKEGQVPQIPMASQAGASYFKPEFSKIPFAV 121
           R  A   MPQ+TTYNPLYD+P+GQYP    K  Q  QIP        + +PE    P  V
Sbjct: 63  RPVAEGFMPQYTTYNPLYDVPIGQYPHTFVKGAQ--QIP----TNIIFREPEQMMSPPTV 119

Query: 122 PNL 125
            NL
Sbjct: 123 XNL 119

BLAST of Lag0000464 vs. NCBI nr
Match: XP_022149382.1 (uncharacterized protein LOC111017812 [Momordica charantia])

HSP 1 Score: 88.6 bits (218), Expect = 4.3e-14
Identity = 56/123 (45.53%), Postives = 74/123 (60.16%), Query Frame = 0

Query: 2   EENGEQEKTKRDIEKIREKVDTIIAALEKGKMVANTTAPDTPIGNPQSGLPFPPSFASHV 61
           ++  EQEK ++DIE++REK+D I+ ALEKGK VA+ T    P+ + Q   P+P  +   +
Sbjct: 3   DQKAEQEKIRKDIEELREKLDVILLALEKGKTVADPTTSSNPVHDQQEIPPYPLGYDPPL 62

Query: 62  RTTAGTSMPQHTTYNPLYDIPVGQYPFPPFKEGQVPQIPMASQAGASYFKPEFSKIPFAV 121
           R  A   M Q+TTYNPLYDI VGQYP PPF +G   QIP        + +PE    P  V
Sbjct: 63  RLVAEGFMQQNTTYNPLYDILVGQYP-PPFVKG-TQQIP----TNIIFREPEQMMPPPTV 119

Query: 122 PNL 125
            NL
Sbjct: 123 LNL 119

BLAST of Lag0000464 vs. NCBI nr
Match: XP_022155098.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111022231, partial [Momordica charantia])

HSP 1 Score: 86.3 bits (212), Expect = 2.1e-13
Identity = 59/129 (45.74%), Postives = 72/129 (55.81%), Query Frame = 0

Query: 2   EENGEQEKTKRDIEKIREKVDTIIAALEKGKMVANTTAPDTPIGNPQSGLPFPPSF---A 61
           +   EQEKT++DIE++REK+D I+ ALEKGK +A T+ P      PQ    F PSF    
Sbjct: 4   DRKSEQEKTRKDIEELREKLDAILLALEKGKTIAETSNPIHEPPTPQFPPGFEPSFRPAG 63

Query: 62  SHVRTTAGTSMPQHTTYNPLYDIPVGQYPFPPFKEGQVPQIPMASQAGASYFKPEFSKIP 121
              R      M Q+TTYNPLYDIP GQ+P PP   G  PQ P    AG  + +PE    P
Sbjct: 64  PSFRPMTEGFMSQYTTYNPLYDIPAGQFP-PPLVRGP-PQAP----AGIIFQEPEQVIAP 123

Query: 122 FAVPNLDDP 128
             V NL  P
Sbjct: 124 PTVLNLGGP 126

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022157796.12.7e-1644.72LOW QUALITY PROTEIN: uncharacterized protein LOC111024415 [Momordica charantia][more]
XP_022149382.14.3e-1445.53uncharacterized protein LOC111017812 [Momordica charantia][more]
XP_022155098.12.1e-1345.74LOW QUALITY PROTEIN: uncharacterized protein LOC111022231, partial [Momordica ch... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 36..62

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0000464.1Lag0000464.1mRNA