Lag0000444 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0000444
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Gag/pol protein
Location	chr4: 7455825 .. 7459292 (+)
RNA-Seq Expression	Lag0000444
Synteny	Lag0000444

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTAAAGTCCATAAGAATTCTCTTATCCATAGCCACATATTATGACTATGAAATATGGCAAATGGACGTCAAGACTGCCTTTCTGAATGGTAATCTTGAAGAGAATATCTTCATGTCTCAACCCGAAGGGTTCATAGCCCAAGGTCAGGAACAAAAGGTTTGTAAGCTCAATCGATCCATTTATGGATTGAAACAAGCATCCAGATCATGGAACATTAGATTTGATACTGCAATCAAATCTTTTGGTTTTGACCAAAACGTTGATGAGCCTTGTGTGTACAAGAAAGTCAACAAAAGGAAAGTAGCTTTTCTAATACTTTATGTAGACGATATCCTACTCATTGGGAATGATGTAGGATACCTCACTGACATTAAGAAATGGCTAGCAGCCCAATTCCAAATGAAAGATCTGGGAGAGGCTCAATACGTTCTGGGAATCCAAATAATTAGGGATCGTAAGAACAAAACGCTAGCTCTGTCTCAAGCAACGTATATTGACAAAATGTTGTCTCGATATTCGATGCAAAACTCCAAGAAGGGACTACTACCCTTCAGACACTACAACAAATTATAGTTTTAATGTCGGACAGAAAAATAGGCGCGGAGGCTTTAATGTCGGACAAAAAAATGCGCGGGCCTTTTAATGTCGGACGCGCGTTTTTTAAAATTTTCGAACTTTTAATGTCGGGCATTGCCCGACATCAAAAGACGTCTTTAATGTCGGGCATTGCCCGACATTAAAAGATATTTTATTTTTTTTTAATTTTAAAAACAGTAAAAAGGTAAAGTGTTTCTCTCTCCCCGACAGCAGCTTCGTTTTTCCCTCTCTCTTCGAAAACAAACCCAAACCCTTGGCGCCGCTTCCTCCCTCGCAGCACATTTCCTCCCTCATCGACGGCGCTTCCTCCCTCATCGACGGCAACCCTCGACGACGAGCTCACCGACGGCGTCCGAAGATTTCTCCCTCACCGACGTCGACTGTCTTCTCGCGTGCGTGGGTTTCTTTGCTTGAACCTTTCTCTATCGTCAGCCACAATATTTCAGATCTAGCTTCGGTTTTTCGACAATGGGGTTTTTTGAGCTCAAACTCGACAAGATCGTGGGTTTTCTCCAGCAAGTGGGTCACTTTTCTGTGTTGCATCCCTTTTTGATTTCTTATCTTCTTCCCCTTTTCCATTTAATCTATCTATCTTTAAGATTCCGATTCCGACGAAGTCTTTGCTGACGACGACGCGTGGCCAGCGAACGGCGCGGTCAGGACTTTGGCTGGTACTCTGCAATCGCTAGGTTTTCGTGTTTTGGATGAAAAATGCTGATCAGAAATCTGGTGGTGTTTATGCTTTTGGTGACGGTTATTGCTCCGATTGCTTTACACTGATCGCCTCGCCAACGTCAAGTTTTCCTGTAAGTTTTTTCGGCTTAGTTCTGGAATCCGGTTCGTCTACTTTTCTCTTTCACTGTTTGCTGTGGATTTTGATATAGGGTTTTCATTTCTGCAGCTGAAGGCGATCTTGTTGAAGGTTTTGCAACTTCTGTAAGTAAATGCGTCTAGCGTCACTCTGTATGCTTAATCTCTTGGCTATTTTCTCTCATTTCTTCTTCTAACTCCCCCTTGCCTTCTTCAAACCAGAGTTTCAAAAGCAATTTTGGGCATCTAAATCTCATCGATGGGGTAATTGTTATATCGATTTCCCATATTTTTTTAATCTATTTTTGGATTCGCTTTTCGTTTTTCTAAATTACATGTTATGATTTTTGCATCTTTCAGATACTGATTTTTCTGATTTTTCATTCTTTGATTCCTCGTTTTGGGCTGTAGAAATCCTCATCAAGCGTGAGAGAGCCTGTCGCGATTATTTACTCCGACAACAAGTCGCATCCGGATTCCACTGCTTCGGTTTGGCAGGGCAACGATGGCATCCAAGGTTTGGCTAAGGATGTGCTATATAAATATTTCTGTTTGTAACATTGCTGTCTGGTTTTGTATATTTCCTAACCTTGTGATTTGTTAATTTTTTCCTTCAGGTGCACAATCTCTTGGAGTAATAGAGCGTAAGTCTACTCGAGTATTGTCCACGACTGATGAGGAAGGTCGTTCTAAAAGTGAGAATCCCATCAAGCAGGTTACGGACTCCATTGAGCGGGCAAATATCATTCCTGTATGAATCTGGCTTTTTTCATTTTTCCTATACTCTTTTGTTGTCTTGTTGTCATAGACTTATTTGCATCTGCATGGTGATACTTAGGAGACCTTGATAGCCCTTTCAAGATTTTCTTATGGTTGTTCTGATTAACTTATTATTCAGCAATAATTTTGTTCTTATCGAGAATTGTCATTACCATTCTCTTGAGAAGTCTATCGCTGTAGCTAGATGGAAAATCTGCATCGCATCTTTCTTGCTCCAATTCCATGCCAAAGAAGTAACTTATATAGTTCCCCAATTGCTTCTTAACTAAATGGCTCTATCTCTTAAAGCCCTCCCAAAGTAGAGCCATAGATGGAGGACATAGAAGATAGCCCATCTTGGGCCAAAGAAGTAACTTACAAGATCGTGGGTTTTCTCCTTAACTTTCTAACATGGACATGTTTCTTCTACATAATGCCATAATGCGAGAGTGGAGATAAGAACATCGGAATTATGACATTTAGGACACATTTCAAGTTGAAAATGGAGGGTGGTTATGCCAGACGACTTTTGCAGGCAAGTTTCTTTCATTTAAAAGTATTATTTTAAGAATATTATATTTTGTGTTTTTTTTTTCGTTCGGATCACTACTTTTTGGTATTAGTTTTGATTCTGCTAGCTTATGTAAAAAAAGAGGGGTTCATTTGGGTGTTTATGGTTTTGTTTCTTTTTATACGATATATCAAGTCCGTATTGGTTGTAGTGGGAGATTCATTGACTTTCTTTTTATACGATATATCAAGTCCATATGGTTTTTCAGGTTGGTATAAGATCGATATCACAAGAAGGAAGATAAGCTCATAGCATAAATTGATAAGATCAATATTGAAATTGTTTGTTTGTGTAGGATTATAACTTTTTTTTTAGGGGGGGGGGTGAGTTTGAAATTGTTTGTGTTAGTCTATAAGTTTAGTGTGGGAGGGGGTTGAGAAATACTTGTGTTGTGTTTTGAAATTGTTTATGTGAGTTTATGATTTTAGTTGGATTTAGTGGGAAGTTGATAAATACTTGAGTCATGCTTCGAAATTGTTTGTATGACTTTATCGTTATATTTTGAAATTGCTTGTGTTAGTTTATAAGTTTAGTTGAGTTGAAGGTTGAGAAATACTTTAGTTATGCTTTGAAATTGTTTGTTTGTGTTGGTTTATATCAATCATAGGCTTTAAAATACTTAGTTATGCTTTGTGTTGCAGATGATGAAATGGATATTCTCGAAAAAGGAGTTCAAAGAGGAACTTGGGAAAGAGCGTTTTAAGGAGTTGTGTACTTATTTTGTTTAG

mRNA sequence

ATGTTAAAGTCCATAAGAATTCTCTTATCCATAGCCACATATTATGACTATGAAATATGGCAAATGGACGTCAAGACTGCCTTTCTGAATGGTAATCTTGAAGAGAATATCTTCATGTCTCAACCCGAAGGGTTCATAGCCCAAGGTCAGGAACAAAAGGTTTGTAAGCTCAATCGATCCATTTATGGATTGAAACAAGCATCCAGATCATGGAACATTAGATTTGATACTGCAATCAAATCTTTTGGTTTTGACCAAAACGTTGATGAGCCTTGTGTGTACAAGAAAGTCAACAAAAGGAAAGTAGCTTTTCTAATACTTTATGTAGACGATATCCTACTCATTGGGAATGATGTAGGATACCTCACTGACATTAAGAAATGGCTAGCAGCCCAATTCCAAATGAAAGATCTGGGAGAGGCTCAATACGTTCTGGGAATCCAAATAATTAGGGATCGTAAGAACAAAACGCTAGCTCTGTCTCAAGCAACCAGCTTCGTTTTTCCCTCTCTCTTCGAAAACAAACCCAAACCCTTGGCGCCGCTTCCTCCCTCGCAGCACATTTCCTCCCTCATCGACGGCGCTTCCTCCCTCATCGACGGCAACCCTCGACGACGAGCTCACCGACGGCGTCCGAAGATTTCTCCCTCACCGACGTCGACTGTCTTCTCGCATTCCGATTCCGACGAAGTCTTTGCTGACGACGACGCGTGGCCAGCGAACGGCGCGGTCAGGACTTTGGCTGCTGAAGGCGATCTTGTTGAAGGTTTTGCAACTTCTAAATCCTCATCAAGCGTGAGAGAGCCTGTCGCGATTATTTACTCCGACAACAAGTCGCATCCGGATTCCACTGCTTCGGTTTGGCAGGGCAACGATGGCATCCAAGGTGCACAATCTCTTGGAGTAATAGAGCGTAAGTCTACTCGAGTATTGTCCACGACTGATGAGGAAGGTCGTTCTAAAAGTGAGAATCCCATCAAGCAGGTTACGGACTCCATTGAGCGGGCAAATATCATTCCTATGATGAAATGGATATTCTCGAAAAAGGAGTTCAAAGAGGAACTTGGGAAAGAGCGTTTTAAGGAGTTGTGTACTTATTTTGTTTAG

Coding sequence (CDS)

ATGTTAAAGTCCATAAGAATTCTCTTATCCATAGCCACATATTATGACTATGAAATATGGCAAATGGACGTCAAGACTGCCTTTCTGAATGGTAATCTTGAAGAGAATATCTTCATGTCTCAACCCGAAGGGTTCATAGCCCAAGGTCAGGAACAAAAGGTTTGTAAGCTCAATCGATCCATTTATGGATTGAAACAAGCATCCAGATCATGGAACATTAGATTTGATACTGCAATCAAATCTTTTGGTTTTGACCAAAACGTTGATGAGCCTTGTGTGTACAAGAAAGTCAACAAAAGGAAAGTAGCTTTTCTAATACTTTATGTAGACGATATCCTACTCATTGGGAATGATGTAGGATACCTCACTGACATTAAGAAATGGCTAGCAGCCCAATTCCAAATGAAAGATCTGGGAGAGGCTCAATACGTTCTGGGAATCCAAATAATTAGGGATCGTAAGAACAAAACGCTAGCTCTGTCTCAAGCAACCAGCTTCGTTTTTCCCTCTCTCTTCGAAAACAAACCCAAACCCTTGGCGCCGCTTCCTCCCTCGCAGCACATTTCCTCCCTCATCGACGGCGCTTCCTCCCTCATCGACGGCAACCCTCGACGACGAGCTCACCGACGGCGTCCGAAGATTTCTCCCTCACCGACGTCGACTGTCTTCTCGCATTCCGATTCCGACGAAGTCTTTGCTGACGACGACGCGTGGCCAGCGAACGGCGCGGTCAGGACTTTGGCTGCTGAAGGCGATCTTGTTGAAGGTTTTGCAACTTCTAAATCCTCATCAAGCGTGAGAGAGCCTGTCGCGATTATTTACTCCGACAACAAGTCGCATCCGGATTCCACTGCTTCGGTTTGGCAGGGCAACGATGGCATCCAAGGTGCACAATCTCTTGGAGTAATAGAGCGTAAGTCTACTCGAGTATTGTCCACGACTGATGAGGAAGGTCGTTCTAAAAGTGAGAATCCCATCAAGCAGGTTACGGACTCCATTGAGCGGGCAAATATCATTCCTATGATGAAATGGATATTCTCGAAAAAGGAGTTCAAAGAGGAACTTGGGAAAGAGCGTTTTAAGGAGTTGTGTACTTATTTTGTTTAG

Protein sequence

MLKSIRILLSIATYYDYEIWQMDVKTAFLNGNLEENIFMSQPEGFIAQGQEQKVCKLNRSIYGLKQASRSWNIRFDTAIKSFGFDQNVDEPCVYKKVNKRKVAFLILYVDDILLIGNDVGYLTDIKKWLAAQFQMKDLGEAQYVLGIQIIRDRKNKTLALSQATSFVFPSLFENKPKPLAPLPPSQHISSLIDGASSLIDGNPRRRAHRRRPKISPSPTSTVFSHSDSDEVFADDDAWPANGAVRTLAAEGDLVEGFATSKSSSSVREPVAIIYSDNKSHPDSTASVWQGNDGIQGAQSLGVIERKSTRVLSTTDEEGRSKSENPIKQVTDSIERANIIPMMKWIFSKKEFKEELGKERFKELCTYFV

Homology

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BLAST of Lag0000444 vs. NCBI nr
Match: TYK15984.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 323.6 bits (828), Expect = 2.3e-84
Identity = 162/192 (84.38%), Postives = 171/192 (89.06%), Query Frame = 0


Query: 1   MLKSIRILLSIATYYDYEIWQMDVKTAFLNGNLEENIFMSQPEGFIAQGQEQKVCKLNRS 60
           MLKSIRILLSIAT+YDYEIWQMDVKTAFLNGNLEE+IFMSQPEGFI QGQEQKVCKLNRS
Sbjct: 412 MLKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIFMSQPEGFITQGQEQKVCKLNRS 471

Query: 61  IYGLKQASRSWNIRFDTAIKSFGFDQNVDEPCVYKKVNKRKVAFLILYVDDILLIGNDVG 120
           IYGLKQASRSWNIRFDTAIKS+GFDQNVDEPCVYKK+NK KVAFL+LYVDDILLIGNDVG
Sbjct: 472 IYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVYKKINKGKVAFLVLYVDDILLIGNDVG 531

Query: 121 YLTDIKKWLAAQFQMKDLGEAQYVLGIQIIRDRKNKTLALSQAT---SFVFPSLFENKPK 180
           YLTD+K WLAAQFQMKDLGEAQYVLGIQIIRDRKNKTLALSQAT     +   L +N  K
Sbjct: 532 YLTDVKAWLAAQFQMKDLGEAQYVLGIQIIRDRKNKTLALSQATYIDKMLVRYLMQNSKK 591

Query: 181 PLAPLPPSQHIS 190
            L P     H+S
Sbjct: 592 DLLPFKHGFHLS 603

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BLAST of Lag0000444 vs. NCBI nr
Match: KAA0025945.1 (gag/pol protein [Cucumis melo var. makuwa] >KAA0026303.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0035786.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0040492.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0041262.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 320.9 bits (821), Expect = 1.5e-83
Identity = 161/192 (83.85%), Postives = 170/192 (88.54%), Query Frame = 0


Query: 1   MLKSIRILLSIATYYDYEIWQMDVKTAFLNGNLEENIFMSQPEGFIAQGQEQKVCKLNRS 60
           MLKSIRILLSIAT+YDYEIWQMDVKTAFLNGNLEE+IFMSQPEGFI QGQEQKVCKLNRS
Sbjct: 802 MLKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIFMSQPEGFITQGQEQKVCKLNRS 861

Query: 61  IYGLKQASRSWNIRFDTAIKSFGFDQNVDEPCVYKKVNKRKVAFLILYVDDILLIGNDVG 120
           IYGLKQASRSWNIRFDTAIKS+GFDQNVDEPCVYKK+NK KVAFL+LYVDDILLIGNDVG
Sbjct: 862 IYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVYKKINKGKVAFLVLYVDDILLIGNDVG 921

Query: 121 YLTDIKKWLAAQFQMKDLGEAQYVLGIQIIRDRKNKTLALSQAT---SFVFPSLFENKPK 180
           YLTD+K WLAAQFQMKDLGEAQYVLGIQIIRDRKNKTLALSQAT     +     +N  K
Sbjct: 922 YLTDVKAWLAAQFQMKDLGEAQYVLGIQIIRDRKNKTLALSQATYIDKLLVRYSMQNSKK 981

Query: 181 PLAPLPPSQHIS 190
            L P     H+S
Sbjct: 982 GLLPFRHGVHLS 993

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BLAST of Lag0000444 vs. NCBI nr
Match: KAA0059226.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 320.9 bits (821), Expect = 1.5e-83
Identity = 161/192 (83.85%), Postives = 170/192 (88.54%), Query Frame = 0


Query: 1   MLKSIRILLSIATYYDYEIWQMDVKTAFLNGNLEENIFMSQPEGFIAQGQEQKVCKLNRS 60
           MLKSIRILLSIAT+YDYEIWQMDVKTAFLNGNLEE+IFMSQPEGFI QGQEQKVCKLNRS
Sbjct: 676 MLKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIFMSQPEGFITQGQEQKVCKLNRS 735

Query: 61  IYGLKQASRSWNIRFDTAIKSFGFDQNVDEPCVYKKVNKRKVAFLILYVDDILLIGNDVG 120
           IYGLKQASRSWNIRFDTAIKS+GFDQNVDEPCVYKK+NK KVAFL+LYVDDILLIGNDVG
Sbjct: 736 IYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVYKKINKGKVAFLVLYVDDILLIGNDVG 795

Query: 121 YLTDIKKWLAAQFQMKDLGEAQYVLGIQIIRDRKNKTLALSQAT---SFVFPSLFENKPK 180
           YLTD+K WLAAQFQMKDLGEAQYVLGIQIIRDRKNKTLALSQAT     +     +N  K
Sbjct: 796 YLTDVKAWLAAQFQMKDLGEAQYVLGIQIIRDRKNKTLALSQATYIDKLLVRYSMQNSKK 855

Query: 181 PLAPLPPSQHIS 190
            L P     H+S
Sbjct: 856 GLLPFRHGVHLS 867

[Close]

BLAST of Lag0000444 vs. NCBI nr
Match: KAA0035907.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 317.0 bits (811), Expect = 2.1e-82
Identity = 159/192 (82.81%), Postives = 168/192 (87.50%), Query Frame = 0


Query: 1   MLKSIRILLSIATYYDYEIWQMDVKTAFLNGNLEENIFMSQPEGFIAQGQEQKVCKLNRS 60
           MLKSIRILLSIA +YDYEIWQMDVKTAFLNGNLEE+IFMSQPEGFI QGQEQKVCKLNRS
Sbjct: 802 MLKSIRILLSIAKFYDYEIWQMDVKTAFLNGNLEESIFMSQPEGFITQGQEQKVCKLNRS 861

Query: 61  IYGLKQASRSWNIRFDTAIKSFGFDQNVDEPCVYKKVNKRKVAFLILYVDDILLIGNDVG 120
           IYGLKQASRSWNIRFDTAIKS+GFDQNVDEPCVYKK+NK KVAFL+LYVDDILLIGNDVG
Sbjct: 862 IYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVYKKINKGKVAFLVLYVDDILLIGNDVG 921

Query: 121 YLTDIKKWLAAQFQMKDLGEAQYVLGIQIIRDRKNKTLALSQAT---SFVFPSLFENKPK 180
           YLTD+K WLAAQFQMKDLGE QYVLGIQIIRDRKNKTLALSQAT     +     +N  K
Sbjct: 922 YLTDVKAWLAAQFQMKDLGEGQYVLGIQIIRDRKNKTLALSQATYIDKLLVRYSMQNSKK 981

Query: 181 PLAPLPPSQHIS 190
            L P     H+S
Sbjct: 982 GLLPFRHGVHLS 993

[Close]

BLAST of Lag0000444 vs. NCBI nr
Match: KAA0033121.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK17112.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 314.3 bits (804), Expect = 1.4e-81
Identity = 157/192 (81.77%), Postives = 168/192 (87.50%), Query Frame = 0


Query: 1   MLKSIRILLSIATYYDYEIWQMDVKTAFLNGNLEENIFMSQPEGFIAQGQEQKVCKLNRS 60
           MLKSIRILLSIAT+YDYEIW+MDV TAFLNGNLEE+IFMSQPEGFI QGQEQKVCKLNRS
Sbjct: 412 MLKSIRILLSIATFYDYEIWKMDVNTAFLNGNLEESIFMSQPEGFITQGQEQKVCKLNRS 471

Query: 61  IYGLKQASRSWNIRFDTAIKSFGFDQNVDEPCVYKKVNKRKVAFLILYVDDILLIGNDVG 120
           IYGLKQASRSWNIRFDTAIKS+GF+QNVDEPCVYKK+NK KV FL+LYVDDILLIGNDVG
Sbjct: 472 IYGLKQASRSWNIRFDTAIKSYGFEQNVDEPCVYKKINKGKVVFLVLYVDDILLIGNDVG 531

Query: 121 YLTDIKKWLAAQFQMKDLGEAQYVLGIQIIRDRKNKTLALSQAT---SFVFPSLFENKPK 180
           YLTD+K WLAAQFQMKDLGEAQYVLGIQIIRDRKNKTLALSQAT     +     +N  K
Sbjct: 532 YLTDVKAWLAAQFQMKDLGEAQYVLGIQIIRDRKNKTLALSQATYIDKMLVRYSMQNSKK 591

Query: 181 PLAPLPPSQHIS 190
            L P     H+S
Sbjct: 592 GLLPFRHGVHLS 603

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BLAST of Lag0000444 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 4.7e-40
Identity = 80/162 (49.38%), Postives = 116/162 (71.60%), Query Frame = 0


Query: 2    LKSIRILLSIATYYDYEIWQMDVKTAFLNGNLEENIFMSQPEGFIAQGQEQKVCKLNRSI 61
            + SIR +LS+A   D E+ Q+DVKTAFL+G+LEE I+M QPEGF   G++  VCKLN+S+
Sbjct: 901  MTSIRTILSLAASLDLEVEQLDVKTAFLHGDLEEEIYMEQPEGFEVAGKKHMVCKLNKSL 960

Query: 62   YGLKQASRSWNIRFDTAIKSFGFDQNVDEPCVY-KKVNKRKVAFLILYVDDILLIGNDVG 121
            YGLKQA R W ++FD+ +KS  + +   +PCVY K+ ++     L+LYVDD+L++G D G
Sbjct: 961  YGLKQAPRQWYMKFDSFMKSQTYLKTYSDPCVYFKRFSENNFIILLLYVDDMLIVGKDKG 1020

Query: 122  YLTDIKKWLAAQFQMKDLGEAQYVLGIQIIRDRKNKTLALSQ 163
             +  +K  L+  F MKDLG AQ +LG++I+R+R ++ L LSQ
Sbjct: 1021 LIAKLKGDLSKSFDMKDLGPAQQILGMKIVRERTSRKLWLSQ 1062

[Close]

BLAST of Lag0000444 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 120.9 bits (302), Expect = 2.9e-26
Identity = 63/164 (38.41%), Postives = 102/164 (62.20%), Query Frame = 0


Query: 2    LKSIRILLSIATYYDYEIWQMDVKTAFLNGNLEENIFMSQPEGFIAQGQEQKVCKLNRSI 61
            + S R +LS+   Y+ ++ QMDVKTAFLNG L+E I+M  P+G         VCKLN++I
Sbjct: 981  ISSFRFILSLVIQYNLKVHQMDVKTAFLNGTLKEEIYMRLPQGISC--NSDNVCKLNKAI 1040

Query: 62   YGLKQASRSWNIRFDTAIKSFGFDQNVDEPCVY--KKVNKRKVAFLILYVDDILLIGNDV 121
            YGLKQA+R W   F+ A+K   F  +  + C+Y   K N  +  +++LYVDD+++   D+
Sbjct: 1041 YGLKQAARCWFEVFEQALKECEFVNSSVDRCIYILDKGNINENIYVLLYVDDVVIATGDM 1100

Query: 122  GYLTDIKKWLAAQFQMKDLGEAQYVLGIQIIRDRKNKTLALSQA 164
              + + K++L  +F+M DL E ++ +GI+I  + +   + LSQ+
Sbjct: 1101 TRMNNFKRYLMEKFRMTDLNEIKHFIGIRI--EMQEDKIYLSQS 1140

[Close]

BLAST of Lag0000444 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 5.6e-25
Identity = 57/148 (38.51%), Postives = 90/148 (60.81%), Query Frame = 0


Query: 4    SIRILLSIATYYDYEIWQMDVKTAFLNGNLEENIFMSQPEGFIAQGQEQKVCKLNRSIYG 63
            SIRI+L +A    + I Q+DV  AFL G L ++++MSQP GFI + +   VCKL +++YG
Sbjct: 1046 SIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDDVYMSQPPGFIDKDRPNYVCKLRKALYG 1105

Query: 64   LKQASRSWNIRFDTAIKSFGFDQNVDEPCVYKKVNKRKVAFLILYVDDILLIGNDVGYLT 123
            LKQA R+W +     + + GF  +V +  ++     + + ++++YVDDIL+ GND   L 
Sbjct: 1106 LKQAPRAWYVELRNYLLTIGFVNSVSDTSLFVLQRGKSIVYMLVYVDDILITGNDPTLLH 1165

Query: 124  DIKKWLAAQFQMKDLGEAQYVLGIQIIR 152
            +    L+ +F +KD  E  Y LGI+  R
Sbjct: 1166 NTLDNLSQRFSVKDHEELHYFLGIEAKR 1193

[Close]

BLAST of Lag0000444 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 1.6e-24
Identity = 55/148 (37.16%), Postives = 89/148 (60.14%), Query Frame = 0


Query: 4    SIRILLSIATYYDYEIWQMDVKTAFLNGNLEENIFMSQPEGFIAQGQEQKVCKLNRSIYG 63
            SIRI+L +A    + I Q+DV  AFL G L + ++MSQP GF+ + +   VC+L ++IYG
Sbjct: 1029 SIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDEVYMSQPPGFVDKDRPDYVCRLRKAIYG 1088

Query: 64   LKQASRSWNIRFDTAIKSFGFDQNVDEPCVYKKVNKRKVAFLILYVDDILLIGNDVGYLT 123
            LKQA R+W +   T + + GF  ++ +  ++     R + ++++YVDDIL+ GND   L 
Sbjct: 1089 LKQAPRAWYVELRTYLLTVGFVNSISDTSLFVLQRGRSIIYMLVYVDDILITGNDTVLLK 1148

Query: 124  DIKKWLAAQFQMKDLGEAQYVLGIQIIR 152
                 L+ +F +K+  +  Y LGI+  R
Sbjct: 1149 HTLDALSQRFSVKEHEDLHYFLGIEAKR 1176

[Close]

BLAST of Lag0000444 vs. ExPASy Swiss-Prot
Match: P25600 (Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY5A PE=5 SV=2)

HSP 1 Score: 86.3 bits (212), Expect = 8.0e-16
Identity = 44/128 (34.38%), Postives = 68/128 (53.12%), Query Frame = 0


Query: 22  MDVKTAFLNGNLEENIFMSQPEGFIAQGQEQKVCKLNRSIYGLKQASRSWNIRFDTAIKS 81
           MDV TAFLN  ++E I++ QP GF+ +     V +L   +YGLKQA   WN   +  +K 
Sbjct: 1   MDVDTAFLNSTMDEPIYVKQPPGFVNERNPDYVWELYGGMYGLKQAPLLWNEHINNTLKK 60

Query: 82  FGFDQNVDEPCVYKKVNKRKVAFLILYVDDILLIGNDVGYLTDIKKWLAAQFQMKDLGEA 141
            GF ++  E  +Y +       ++ +YVDD+L+          +K+ L   + MKDLG+ 
Sbjct: 61  IGFCRHEGEHGLYFRSTSDGPIYIAVYVDDLLVAAPSPKIYDRVKQELTKLYSMKDLGKV 120

Query: 142 QYVLGIQI 150
              LG+ I
Sbjct: 121 DKFLGLNI 128

[Close]

BLAST of Lag0000444 vs. ExPASy TrEMBL
Match: A0A5D3CYF4 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94G001110 PE=4 SV=1)

HSP 1 Score: 323.6 bits (828), Expect = 1.1e-84
Identity = 162/192 (84.38%), Postives = 171/192 (89.06%), Query Frame = 0


Query: 1   MLKSIRILLSIATYYDYEIWQMDVKTAFLNGNLEENIFMSQPEGFIAQGQEQKVCKLNRS 60
           MLKSIRILLSIAT+YDYEIWQMDVKTAFLNGNLEE+IFMSQPEGFI QGQEQKVCKLNRS
Sbjct: 412 MLKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIFMSQPEGFITQGQEQKVCKLNRS 471

Query: 61  IYGLKQASRSWNIRFDTAIKSFGFDQNVDEPCVYKKVNKRKVAFLILYVDDILLIGNDVG 120
           IYGLKQASRSWNIRFDTAIKS+GFDQNVDEPCVYKK+NK KVAFL+LYVDDILLIGNDVG
Sbjct: 472 IYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVYKKINKGKVAFLVLYVDDILLIGNDVG 531

Query: 121 YLTDIKKWLAAQFQMKDLGEAQYVLGIQIIRDRKNKTLALSQAT---SFVFPSLFENKPK 180
           YLTD+K WLAAQFQMKDLGEAQYVLGIQIIRDRKNKTLALSQAT     +   L +N  K
Sbjct: 532 YLTDVKAWLAAQFQMKDLGEAQYVLGIQIIRDRKNKTLALSQATYIDKMLVRYLMQNSKK 591

Query: 181 PLAPLPPSQHIS 190
            L P     H+S
Sbjct: 592 DLLPFKHGFHLS 603

[Close]

BLAST of Lag0000444 vs. ExPASy TrEMBL
Match: A0A5A7TZD0 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G00090 PE=4 SV=1)

HSP 1 Score: 320.9 bits (821), Expect = 7.2e-84
Identity = 161/192 (83.85%), Postives = 170/192 (88.54%), Query Frame = 0


Query: 1   MLKSIRILLSIATYYDYEIWQMDVKTAFLNGNLEENIFMSQPEGFIAQGQEQKVCKLNRS 60
           MLKSIRILLSIAT+YDYEIWQMDVKTAFLNGNLEE+IFMSQPEGFI QGQEQKVCKLNRS
Sbjct: 802 MLKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIFMSQPEGFITQGQEQKVCKLNRS 861

Query: 61  IYGLKQASRSWNIRFDTAIKSFGFDQNVDEPCVYKKVNKRKVAFLILYVDDILLIGNDVG 120
           IYGLKQASRSWNIRFDTAIKS+GFDQNVDEPCVYKK+NK KVAFL+LYVDDILLIGNDVG
Sbjct: 862 IYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVYKKINKGKVAFLVLYVDDILLIGNDVG 921

Query: 121 YLTDIKKWLAAQFQMKDLGEAQYVLGIQIIRDRKNKTLALSQAT---SFVFPSLFENKPK 180
           YLTD+K WLAAQFQMKDLGEAQYVLGIQIIRDRKNKTLALSQAT     +     +N  K
Sbjct: 922 YLTDVKAWLAAQFQMKDLGEAQYVLGIQIIRDRKNKTLALSQATYIDKLLVRYSMQNSKK 981

Query: 181 PLAPLPPSQHIS 190
            L P     H+S
Sbjct: 982 GLLPFRHGVHLS 993

[Close]

BLAST of Lag0000444 vs. ExPASy TrEMBL
Match: A0A5A7UYE8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold430G001570 PE=4 SV=1)

HSP 1 Score: 320.9 bits (821), Expect = 7.2e-84
Identity = 161/192 (83.85%), Postives = 170/192 (88.54%), Query Frame = 0


Query: 1   MLKSIRILLSIATYYDYEIWQMDVKTAFLNGNLEENIFMSQPEGFIAQGQEQKVCKLNRS 60
           MLKSIRILLSIAT+YDYEIWQMDVKTAFLNGNLEE+IFMSQPEGFI QGQEQKVCKLNRS
Sbjct: 676 MLKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIFMSQPEGFITQGQEQKVCKLNRS 735

Query: 61  IYGLKQASRSWNIRFDTAIKSFGFDQNVDEPCVYKKVNKRKVAFLILYVDDILLIGNDVG 120
           IYGLKQASRSWNIRFDTAIKS+GFDQNVDEPCVYKK+NK KVAFL+LYVDDILLIGNDVG
Sbjct: 736 IYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVYKKINKGKVAFLVLYVDDILLIGNDVG 795

Query: 121 YLTDIKKWLAAQFQMKDLGEAQYVLGIQIIRDRKNKTLALSQAT---SFVFPSLFENKPK 180
           YLTD+K WLAAQFQMKDLGEAQYVLGIQIIRDRKNKTLALSQAT     +     +N  K
Sbjct: 796 YLTDVKAWLAAQFQMKDLGEAQYVLGIQIIRDRKNKTLALSQATYIDKLLVRYSMQNSKK 855

Query: 181 PLAPLPPSQHIS 190
            L P     H+S
Sbjct: 856 GLLPFRHGVHLS 867

[Close]

BLAST of Lag0000444 vs. ExPASy TrEMBL
Match: A0A5A7T2V9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold56G00760 PE=4 SV=1)

HSP 1 Score: 317.0 bits (811), Expect = 1.0e-82
Identity = 159/192 (82.81%), Postives = 168/192 (87.50%), Query Frame = 0


Query: 1   MLKSIRILLSIATYYDYEIWQMDVKTAFLNGNLEENIFMSQPEGFIAQGQEQKVCKLNRS 60
           MLKSIRILLSIA +YDYEIWQMDVKTAFLNGNLEE+IFMSQPEGFI QGQEQKVCKLNRS
Sbjct: 802 MLKSIRILLSIAKFYDYEIWQMDVKTAFLNGNLEESIFMSQPEGFITQGQEQKVCKLNRS 861

Query: 61  IYGLKQASRSWNIRFDTAIKSFGFDQNVDEPCVYKKVNKRKVAFLILYVDDILLIGNDVG 120
           IYGLKQASRSWNIRFDTAIKS+GFDQNVDEPCVYKK+NK KVAFL+LYVDDILLIGNDVG
Sbjct: 862 IYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVYKKINKGKVAFLVLYVDDILLIGNDVG 921

Query: 121 YLTDIKKWLAAQFQMKDLGEAQYVLGIQIIRDRKNKTLALSQAT---SFVFPSLFENKPK 180
           YLTD+K WLAAQFQMKDLGE QYVLGIQIIRDRKNKTLALSQAT     +     +N  K
Sbjct: 922 YLTDVKAWLAAQFQMKDLGEGQYVLGIQIIRDRKNKTLALSQATYIDKLLVRYSMQNSKK 981

Query: 181 PLAPLPPSQHIS 190
            L P     H+S
Sbjct: 982 GLLPFRHGVHLS 993

[Close]

BLAST of Lag0000444 vs. ExPASy TrEMBL
Match: A0A5D3CZY3 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1032G00460 PE=4 SV=1)

HSP 1 Score: 314.3 bits (804), Expect = 6.7e-82
Identity = 157/192 (81.77%), Postives = 168/192 (87.50%), Query Frame = 0


Query: 1   MLKSIRILLSIATYYDYEIWQMDVKTAFLNGNLEENIFMSQPEGFIAQGQEQKVCKLNRS 60
           MLKSIRILLSIAT+YDYEIW+MDV TAFLNGNLEE+IFMSQPEGFI QGQEQKVCKLNRS
Sbjct: 412 MLKSIRILLSIATFYDYEIWKMDVNTAFLNGNLEESIFMSQPEGFITQGQEQKVCKLNRS 471

Query: 61  IYGLKQASRSWNIRFDTAIKSFGFDQNVDEPCVYKKVNKRKVAFLILYVDDILLIGNDVG 120
           IYGLKQASRSWNIRFDTAIKS+GF+QNVDEPCVYKK+NK KV FL+LYVDDILLIGNDVG
Sbjct: 472 IYGLKQASRSWNIRFDTAIKSYGFEQNVDEPCVYKKINKGKVVFLVLYVDDILLIGNDVG 531

Query: 121 YLTDIKKWLAAQFQMKDLGEAQYVLGIQIIRDRKNKTLALSQAT---SFVFPSLFENKPK 180
           YLTD+K WLAAQFQMKDLGEAQYVLGIQIIRDRKNKTLALSQAT     +     +N  K
Sbjct: 532 YLTDVKAWLAAQFQMKDLGEAQYVLGIQIIRDRKNKTLALSQATYIDKMLVRYSMQNSKK 591

Query: 181 PLAPLPPSQHIS 190
            L P     H+S
Sbjct: 592 GLLPFRHGVHLS 603

[Close]

BLAST of Lag0000444 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 120.9 bits (302), Expect = 2.1e-27
Identity = 58/154 (37.66%), Postives = 97/154 (62.99%), Query Frame = 0


Query: 2   LKSIRILLSIATYYDYEIWQMDVKTAFLNGNLEENIFMSQPEGFIA-QGQE---QKVCKL 61
           L S++++L+I+  Y++ + Q+D+  AFLNG+L+E I+M  P G+ A QG       VC L
Sbjct: 173 LTSVKLILAISAIYNFTLHQLDISNAFLNGDLDEEIYMKLPPGYAARQGDSLPPNAVCYL 232

Query: 62  NRSIYGLKQASRSWNIRFDTAIKSFGFDQNVDEPCVYKKVNKRKVAFLILYVDDILLIGN 121
            +SIYGLKQASR W ++F   +  FGF Q+  +   + K+       +++YVDDI++  N
Sbjct: 233 KKSIYGLKQASRQWFLKFSVTLIGFGFVQSHSDHTYFLKITATLFLCVLVYVDDIIICSN 292

Query: 122 DVGYLTDIKKWLAAQFQMKDLGEAQYVLGIQIIR 152
           +   + ++K  L + F+++DLG  +Y LG++I R
Sbjct: 293 NDAAVDELKSQLKSCFKLRDLGPLKYFLGLEIAR 326

[Close]

BLAST of Lag0000444 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 46.2 bits (108), Expect = 6.5e-05
Identity = 24/46 (52.17%), Postives = 30/46 (65.22%), Query Frame = 0


Query: 104 FLILYVDDILLIGNDVGYLTDIKKWLAAQFQMKDLGEAQYVLGIQI 150
           +L+LYVDDILL G+    L  +   L++ F MKDLG   Y LGIQI
Sbjct: 2   YLLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQI 47

The following BLAST results are available for this feature:

BLAST of Lag0000444 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK15984.1	2.3e-84	84.38	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0025945.1	1.5e-83	83.85	gag/pol protein [Cucumis melo var. makuwa] >KAA0026303.1 gag/pol protein [Cucumi...	[more]
KAA0059226.1	1.5e-83	83.85	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0035907.1	2.1e-82	82.81	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0033121.1	1.4e-81	81.77	gag/pol protein [Cucumis melo var. makuwa] >TYK17112.1 gag/pol protein [Cucumis ...	[more]

BLAST of Lag0000444 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	4.7e-40	49.38	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	2.9e-26	38.41	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q94HW2	5.6e-25	38.51	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	1.6e-24	37.16	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P25600	8.0e-16	34.38	Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain AT...	[more]

BLAST of Lag0000444 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CYF4	1.1e-84	84.38	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94G00111...	[more]
A0A5A7TZD0	7.2e-84	83.85	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G000...	[more]
A0A5A7UYE8	7.2e-84	83.85	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold430G0015...	[more]
A0A5A7T2V9	1.0e-82	82.81	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold56G00760...	[more]
A0A5D3CZY3	6.7e-82	81.77	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1032G004...	[more]

BLAST of Lag0000444 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	2.1e-27	37.66	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00810.1	6.5e-05	52.17	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 2..161 e-value: 4.2E-46 score: 157.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 198..226
None	No IPR available	PANTHER	PTHR45895	FAMILY NOT NAMED	coord: 4..158
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 14..149

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0000444.1	Lag0000444.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding